prot_H-elongata_contig16350.4019.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig16350.4019.1
Unique Nameprot_H-elongata_contig16350.4019.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length262
Homology
BLAST of mRNA_H-elongata_contig16350.4019.1 vs. uniprot
Match: A0A6H5L3F2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3F2_9PHAE)

HSP 1 Score: 281 bits (718), Expect = 1.280e-91
Identity = 156/270 (57.78%), Postives = 187/270 (69.26%), Query Frame = 0
Query:    2 WTKPAEARVLMTRTFTKGQPVPWRFKPGTTASITWIELVLREGKNRQIRRLCRRSEYELTRLHRVSVGPIMLGDLKEACCRQLTRREVKTLYKRCLPEDPLCPTVRQVKEILWRRLEQTSRSLREAASKLSMREENRAENRITHYDERGVGSAEYVTNEQ-------EIHSGS-RAPVSDIRRGGGGSASSFA--KNVSRILTICIDFARRDLHEAPEGSDGDSDGVENSCGDEERSLAQARAVPPNEAHMICGYRKSQIERLGLEYSTM 261
            WTKPAEARVL+T+TF  GQPVPWRFKPGT A+ITWIE+VLREGKNRQIRRLCRRSE+ELTRLHR+SVGPI+LGD+ E  CR+LTRREV+ LYKRCLPEDPLCPT+  V++IL  RL QT+R +R AA     R E R  +      ++     E  T E        ++  G    P           A +FA  ++++ I+   IDF+RRDLHE P G DG+S G +  C  E+ SLAQARAVPPNE HM+CGYR SQIERLGL Y TM
Sbjct:   17 WTKPAEARVLLTKTFKTGQPVPWRFKPGTVATITWIEVVLREGKNRQIRRLCRRSEFELTRLHRISVGPIVLGDVAEGSCRELTRREVEALYKRCLPEDPLCPTIDAVQDILKSRLAQTARRIRTAAEVGGHRFEAREHSSAMDVPQKDA--PERPTREDAEQRWAAKVRDGECGCPXXXXXXXXXXRAKAFAGEEDLASIVKRLIDFSRRDLHETPAGPDGESAGPDY-CPGEKESLAQARAVPPNETHMVCGYRSSQIERLGLTYGTM 283          
BLAST of mRNA_H-elongata_contig16350.4019.1 vs. uniprot
Match: D7FV84_ECTSI (Pseudouridine synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV84_ECTSI)

HSP 1 Score: 283 bits (723), Expect = 6.100e-91
Identity = 156/269 (57.99%), Postives = 189/269 (70.26%), Query Frame = 0
Query:    2 WTKPAEARVLMTRTFTKGQPVPWRFKPGTTASITWIELVLREGKNRQIRRLCRRSEYELTRLHRVSVGPIMLGDLKEACCRQLTRREVKTLYKRCLPEDPLCPTVRQVKEILWRRLEQTSRSLREAAS----KLSMREENRAENRITHYD--ERGVGSAEYVTNEQEIHSGSRA-PVSDIRRGGGGSASSFA--KNVSRILTICIDFARRDLHEAPEGSDGDSDGVENSCGDEERSLAQARAVPPNEAHMICGYRKSQIERLGLEYSTM 261
            WTKPAEARVL+T+TF  GQPVPWRFKPGT A+ITWIE+VLREGKNRQIRRLCRRSE+ELTRLHR+SVGPI+LGD++E  CR+LTR+EV+ LYKRCLPEDPLCPT+  V++IL  RL QT+R +R  A     +   RE + A + +   D  ER            +   G R  P    +  G     +FA  ++++ I+   IDFARRDLHE P G DG+S G +  C  E+ SLAQARAVPPNE HM+CGYR SQIERLGL Y TM
Sbjct:  121 WTKPAEARVLLTKTFKTGQPVPWRFKPGTVATITWIEVVLREGKNRQIRRLCRRSEFELTRLHRISVGPIVLGDVEEGSCRELTRQEVEALYKRCLPEDPLCPTIDAVQDILQSRLSQTARRIRTTAEVGGHRFKAREHSSAMD-VPQKDMPERPTAEDAEQRRAAKARDGERGCPCRTTQGPGRRRVKAFATEEDLASIMKRLIDFARRDLHETPAGPDGESAGPDY-CPGEKESLAQARAVPPNETHMVCGYRSSQIERLGLTYGTM 387          
BLAST of mRNA_H-elongata_contig16350.4019.1 vs. uniprot
Match: A0A533ZMC8_9BACT (Pseudouridine synthase n=5 Tax=unclassified Nitrospirae TaxID=1298915 RepID=A0A533ZMC8_9BACT)

HSP 1 Score: 74.3 bits (181), Expect = 2.770e-12
Identity = 38/92 (41.30%), Postives = 55/92 (59.78%), Query Frame = 0
Query:    3 TKPAEARVLMTRTFTKGQPVPWRFKPGTTASITWIELVLREGKNRQIRRLCRRSEYELTRLHRVSVGPIMLGDLKEACCRQLTRREVKTLYK 94
            T+PAE R+L        +PVP RF+     +  W+E+ LREG NRQ+RR+    E+   RL R+++GPIMLGDL+    R L   E+  +Y+
Sbjct:  112 TRPAEVRLLSDAPELPDRPVPIRFRKNVPTA--WLEITLREGLNRQVRRMTAAVEHPTVRLVRIAIGPIMLGDLQPGHWRDLANSEIDQIYR 201          
BLAST of mRNA_H-elongata_contig16350.4019.1 vs. uniprot
Match: A0A1E4DLX0_9BACT (Pseudouridine synthase n=1 Tax=Nitrospira sp. SCN 59-13 TaxID=1660252 RepID=A0A1E4DLX0_9BACT)

HSP 1 Score: 71.2 bits (173), Expect = 2.310e-11
Identity = 38/91 (41.76%), Postives = 56/91 (61.54%), Query Frame = 0
Query:    3 TKPAEARVLMTRTFTKGQPVPWRFKPGTTASITWIELVLREGKNRQIRRLCRRSEYELTRLHRVSVGPIMLGDLKEACCRQLTRREVKTLY 93
            T+PA+AR+L        +PVP RF+     +  W+EL LREG NRQ+RR+     +   RL R+++GPI LGDL+    R+LT +EV  ++
Sbjct:  105 TRPAQARLLEESPHLPDRPVPIRFRKHVPTA--WLELTLREGMNRQVRRMTAAVGHPTLRLVRIAIGPIALGDLQPGEWRELTTQEVAAIF 193          
BLAST of mRNA_H-elongata_contig16350.4019.1 vs. uniprot
Match: A0A1G1IG46_9BACT (Pseudouridine synthase n=2 Tax=unclassified Nitrospirae TaxID=1298915 RepID=A0A1G1IG46_9BACT)

HSP 1 Score: 70.5 bits (171), Expect = 4.100e-11
Identity = 36/91 (39.56%), Postives = 54/91 (59.34%), Query Frame = 0
Query:    3 TKPAEARVLMTRTFTKGQPVPWRFKPGTTASITWIELVLREGKNRQIRRLCRRSEYELTRLHRVSVGPIMLGDLKEACCRQLTRREVKTLY 93
            T+PAE RVL        + VP RF+     +  W+ + LREG NRQ+RR+     +   RL R+++GP+ LGDL+    R++T RE+K +Y
Sbjct:  101 TRPAEVRVLPEEPAFPDRAVPIRFRKSVPTA--WLRITLREGMNRQVRRMTAAVGHPTVRLIRIAIGPVALGDLEPGHWREMTSREIKHIY 189          
BLAST of mRNA_H-elongata_contig16350.4019.1 vs. uniprot
Match: A0A838IEP5_9DELT (Pseudouridine synthase n=1 Tax=Bradymonadaceae bacterium TaxID=2740543 RepID=A0A838IEP5_9DELT)

HSP 1 Score: 70.5 bits (171), Expect = 5.340e-11
Identity = 40/100 (40.00%), Postives = 57/100 (57.00%), Query Frame = 0
Query:    3 TKPAEARVLMTRTFTKGQPVPWRFKPGTTASITWIELVLREGKNRQIRRLCRRSEYELTRLHRVSVGPIMLGDLKEACCRQLTRREVKTLYKRCLPEDPL 102
            T+PA ARV+  R  T                 +WIELV+ EG++RQ+R+LC RS  ++ +L R+ +GP+ LG+L+   CR L R EV  LY   L +D L
Sbjct:  102 TEPARARVVERRDKT-----------------SWIELVICEGRHRQVRKLCERSGLQIRKLRRMRLGPLELGELRLRWCRPLERAEVAALYAAALADDAL 184          
BLAST of mRNA_H-elongata_contig16350.4019.1 vs. uniprot
Match: A0A532F5I2_9BACT (Pseudouridine synthase n=1 Tax=Nitrospira sp. TaxID=70125 RepID=A0A532F5I2_9BACT)

HSP 1 Score: 70.1 bits (170), Expect = 7.610e-11
Identity = 38/91 (41.76%), Postives = 53/91 (58.24%), Query Frame = 0
Query:    3 TKPAEARVLMTRTFTKGQPVPWRFKPGTTASITWIELVLREGKNRQIRRLCRRSEYELTRLHRVSVGPIMLGDLKEACCRQLTRREVKTLY 93
            TKPAE R+L        +PVP RF+     +  W+E++LREG NRQ+RR+         RL RV++GPI+LGDL     R +T  E+  +Y
Sbjct:  116 TKPAEVRLLPDNPQLPDRPVPIRFRKNVPTA--WLEIILREGLNRQVRRMTAAVGNPTLRLVRVAIGPIVLGDLNPGDWRNVTSGEISQIY 204          
BLAST of mRNA_H-elongata_contig16350.4019.1 vs. uniprot
Match: B3U4M3_9BACT (Pseudouridine synthase n=5 Tax=Nitrospira TaxID=1234 RepID=B3U4M3_9BACT)

HSP 1 Score: 69.7 bits (169), Expect = 8.260e-11
Identity = 39/91 (42.86%), Postives = 54/91 (59.34%), Query Frame = 0
Query:    3 TKPAEARVLMTRTFTKGQPVPWRFKPGTTASITWIELVLREGKNRQIRRLCRRSEYELTRLHRVSVGPIMLGDLKEACCRQLTRREVKTLY 93
            TKPA+AR+L+       +PVP RF+     +  W+EL LREG NRQ+RR+     +   RL RV++GPI LG L     R+LT+ E   +Y
Sbjct:  104 TKPAQARLLLEAPSIPERPVPIRFRKHVPTA--WLELTLREGMNRQVRRMTAAVGHPTLRLVRVAIGPITLGALLPGQWRELTKAETAEIY 192          
BLAST of mRNA_H-elongata_contig16350.4019.1 vs. uniprot
Match: A0A532DIV7_9BACT (Pseudouridine synthase n=2 Tax=Nitrospira sp. TaxID=70125 RepID=A0A532DIV7_9BACT)

HSP 1 Score: 68.9 bits (167), Expect = 1.550e-10
Identity = 38/91 (41.76%), Postives = 54/91 (59.34%), Query Frame = 0
Query:    3 TKPAEARVLMTRTFTKGQPVPWRFKPGTTASITWIELVLREGKNRQIRRLCRRSEYELTRLHRVSVGPIMLGDLKEACCRQLTRREVKTLY 93
            TKPAE R+L        +PVP RF+     +  W+E+ LREG NRQ+RR+     +   RL RV+VGPI+LG ++    R LT  E++ +Y
Sbjct:  101 TKPAEVRLLPDDPQLPDRPVPIRFRKNVPTA--WVEMTLREGLNRQVRRMTASVGHPTLRLVRVAVGPIVLGGIQPGEWRDLTSSEIEQIY 189          
BLAST of mRNA_H-elongata_contig16350.4019.1 vs. uniprot
Match: L0D9D7_SINAD (Pseudouridine synthase n=2 Tax=Singulisphaera TaxID=466152 RepID=L0D9D7_SINAD)

HSP 1 Score: 68.9 bits (167), Expect = 1.600e-10
Identity = 39/90 (43.33%), Postives = 52/90 (57.78%), Query Frame = 0
Query:    3 TKPAEARVLMTRTFTKGQPVPWRFKPGTTASITWIELVLREGKNRQIRRLCRRSEYELTRLHRVSVGPIMLGDLKEACCRQLTRREVKTL 92
            T+PAEA +L        + VP RF+     +  WI LVLREG+NRQ+RR+     Y   RL RV++GP++LGDL     R+LT  E   L
Sbjct:  102 TRPAEAELLTEPPALPERSVPIRFRKNVPTA--WIRLVLREGRNRQVRRMTAAIGYPTLRLVRVAIGPVLLGDLAPGAWRELTPHERNAL 189          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig16350.4019.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L3F2_9PHAE1.280e-9157.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FV84_ECTSI6.100e-9157.99Pseudouridine synthase n=1 Tax=Ectocarpus siliculo... [more]
A0A533ZMC8_9BACT2.770e-1241.30Pseudouridine synthase n=5 Tax=unclassified Nitros... [more]
A0A1E4DLX0_9BACT2.310e-1141.76Pseudouridine synthase n=1 Tax=Nitrospira sp. SCN ... [more]
A0A1G1IG46_9BACT4.100e-1139.56Pseudouridine synthase n=2 Tax=unclassified Nitros... [more]
A0A838IEP5_9DELT5.340e-1140.00Pseudouridine synthase n=1 Tax=Bradymonadaceae bac... [more]
A0A532F5I2_9BACT7.610e-1141.76Pseudouridine synthase n=1 Tax=Nitrospira sp. TaxI... [more]
B3U4M3_9BACT8.260e-1142.86Pseudouridine synthase n=5 Tax=Nitrospira TaxID=12... [more]
A0A532DIV7_9BACT1.550e-1041.76Pseudouridine synthase n=2 Tax=Nitrospira sp. TaxI... [more]
L0D9D7_SINAD1.600e-1043.33Pseudouridine synthase n=2 Tax=Singulisphaera TaxI... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR042092Pseudouridine synthase, RsuA/RluB/E/F, catalytic domainGENE3D3.30.70.1560coord: 3..74
e-value: 4.1E-14
score: 54.6
NoneNo IPR availablePANTHERPTHR21600RIBOSOMAL LARGE SUBUNIT PSEUDOURIDINE SYNTHASE Bcoord: 29..99
NoneNo IPR availablePANTHERPTHR21600:SF2RIBOSOMAL LARGE SUBUNIT PSEUDOURIDINE SYNTHASE Bcoord: 29..99
IPR020103Pseudouridine synthase, catalytic domain superfamilySUPERFAMILY55120Pseudouridine synthasecoord: 9..90

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig16350contigH-elongata_contig16350:1569..3489 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig16350.4019.1mRNA_H-elongata_contig16350.4019.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig16350 1166..5744 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig16350.4019.1 ID=prot_H-elongata_contig16350.4019.1|Name=mRNA_H-elongata_contig16350.4019.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=262bp
MWTKPAEARVLMTRTFTKGQPVPWRFKPGTTASITWIELVLREGKNRQIR
RLCRRSEYELTRLHRVSVGPIMLGDLKEACCRQLTRREVKTLYKRCLPED
PLCPTVRQVKEILWRRLEQTSRSLREAASKLSMREENRAENRITHYDERG
VGSAEYVTNEQEIHSGSRAPVSDIRRGGGGSASSFAKNVSRILTICIDFA
RRDLHEAPEGSDGDSDGVENSCGDEERSLAQARAVPPNEAHMICGYRKSQ
IERLGLEYSTM*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR042092PsdUridine_s_RsuA/RluB/E/F_cat
IPR020103PsdUridine_synth_cat_dom_sf