mRNA_H-elongata_contig163456.4017.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig163456.4017.1
Unique NamemRNA_H-elongata_contig163456.4017.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig163456.4017.1 vs. uniprot
Match: A0A6H5K785_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K785_9PHAE)

HSP 1 Score: 167 bits (422), Expect = 5.480e-48
Identity = 81/98 (82.65%), Postives = 91/98 (92.86%), Query Frame = 2
Query:   23 LLGLLLLILAAFAVAPVLVIVLGLMSYVVWWYVSKEGTSFLHHAQEHENRFWTTVAFCFSGALVFVHDSPVALGQWSPTLGFVCVTLFTYTVHSLDRQ 316
            L+G+LLLI AA AVAPVLVIVLGLM+YVVWWYVS+E TS++HHAQEHENRFWTTVAFCFSGALVFVHDSPVALGQWSP LGF+ V +FT++VHS DRQ
Sbjct:   19 LVGVLLLIFAALAVAPVLVIVLGLMTYVVWWYVSREDTSYMHHAQEHENRFWTTVAFCFSGALVFVHDSPVALGQWSPVLGFLFVMMFTFSVHSYDRQ 116          
BLAST of mRNA_H-elongata_contig163456.4017.1 vs. uniprot
Match: D7G3Z8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3Z8_ECTSI)

HSP 1 Score: 167 bits (422), Expect = 8.320e-46
Identity = 81/98 (82.65%), Postives = 91/98 (92.86%), Query Frame = 2
Query:   23 LLGLLLLILAAFAVAPVLVIVLGLMSYVVWWYVSKEGTSFLHHAQEHENRFWTTVAFCFSGALVFVHDSPVALGQWSPTLGFVCVTLFTYTVHSLDRQ 316
            L+G+LLLI AA AVAPVLVIVLGLM+YVVWWYVS+E TS++HHAQEHENRFWTTVAFCFSGALVFVHDSPVALGQWSP LGF+ V +FT++VHS DRQ
Sbjct:   19 LVGVLLLIFAALAVAPVLVIVLGLMTYVVWWYVSREDTSYMHHAQEHENRFWTTVAFCFSGALVFVHDSPVALGQWSPVLGFLFVMMFTFSVHSYDRQ 116          
BLAST of mRNA_H-elongata_contig163456.4017.1 vs. uniprot
Match: F0WSR9_9STRA (Uncharacterized protein AlNc14C237G9414 n=2 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WSR9_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 1.890e-20
Identity = 50/102 (49.02%), Postives = 72/102 (70.59%), Query Frame = 2
Query:    8 TLVVLLLGLLLLILAAFAVAPVLVIVLGLMSYVVWWYVSKEGTSFLHHAQEHENRFWTTVAFCFSGALVFVHDSPVALGQWSPTLGFVCVTLFTYTVHSLDR 313
            T++ L+L L+LLILA FA AP+       + Y++  Y+S E   ++H AQE ENRFWTT AF FS A++++ DSP+A+G+W P+LG++ VT FT  +H LDR
Sbjct:   48 TMITLMLCLILLILAFFAYAPLFCACWCGIMYLIGIYLSNESRWWIHDAQEFENRFWTTTAFLFSTAVMYIRDSPLAIGRWHPSLGWILVTTFTLFIHFLDR 149          
BLAST of mRNA_H-elongata_contig163456.4017.1 vs. uniprot
Match: A0A2P4YCM6_9STRA (Uncharacterized protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YCM6_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 2.940e-17
Identity = 49/93 (52.69%), Postives = 63/93 (67.74%), Query Frame = 2
Query:   38 LLILAAFAVAPVLVIV-LGLMSYVVWWYVSKEGTSFLHHAQEHENRFWTTVAFCFSGALVFVHDSPVALGQWSPTLGFVCVTLFTYTVHSLDR 313
            LL++A FA AP+L    LG+M YV+  Y+S E     H AQE ENRFWT  AF FS A++++ DSP+A+GQW+ TLG V V  FT +VH  DR
Sbjct:   71 LLVMAFFAYAPLLCASWLGIM-YVIGLYLSTESNWRWHDAQEFENRFWTGTAFMFSAAVLYIKDSPLAVGQWNSTLGLVLVFGFTMSVHFFDR 162          
BLAST of mRNA_H-elongata_contig163456.4017.1 vs. uniprot
Match: A0A7S0FB27_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizosolenia setigera TaxID=3005 RepID=A0A7S0FB27_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 3.170e-17
Identity = 48/98 (48.98%), Postives = 64/98 (65.31%), Query Frame = 2
Query:   20 LLLGLLLLILAAFAVAPVLVIVLGLMSYVVWWYVSKEGTSFLHHAQEHENRFWTTVAFCFSGALVFVHDSPVALGQWSPTLGFVCVTLFTYTVHSLDR 313
            LL+G+LLL LA F+ APV       + Y ++ +V+ E ++ +HHAQE ENRFWT +A  FS AL F  DSP A+G WSP++GF  V    Y VH+ DR
Sbjct:   32 LLVGILLLFLAFFSFAPVFCSCTLSLLYTLYLFVAYEESN-IHHAQEFENRFWTILALLFSTALFFAKDSPFAIGNWSPSIGFTLVISIGYGVHAYDR 128          
BLAST of mRNA_H-elongata_contig163456.4017.1 vs. uniprot
Match: A0A2D4C4B6_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C4B6_PYTIN)

HSP 1 Score: 85.5 bits (210), Expect = 3.290e-17
Identity = 48/93 (51.61%), Postives = 63/93 (67.74%), Query Frame = 2
Query:   38 LLILAAFAVAPVLVIV-LGLMSYVVWWYVSKEGTSFLHHAQEHENRFWTTVAFCFSGALVFVHDSPVALGQWSPTLGFVCVTLFTYTVHSLDR 313
            LL++A FA AP+L +  LGL+ Y+V  Y+S E     H AQE ENRFWT  AF FS A++++ DSP+ALG+W+ T G + V  FT  VH LDR
Sbjct:   89 LLVMAFFAFAPLLCVTSLGLL-YLVGLYLSTESNWRWHDAQEFENRFWTLTAFLFSTAVLYIQDSPIALGRWNATFGMLLVVSFTSGVHFLDR 180          
BLAST of mRNA_H-elongata_contig163456.4017.1 vs. uniprot
Match: A0A0P1AH66_PLAHL (Uncharacterized protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AH66_PLAHL)

HSP 1 Score: 85.5 bits (210), Expect = 3.300e-17
Identity = 49/94 (52.13%), Postives = 66/94 (70.21%), Query Frame = 2
Query:   38 LLILAAFAVAPVLVIV-LGLMSYVVWWYVSKEGTSFL-HHAQEHENRFWTTVAFCFSGALVFVHDSPVALGQWSPTLGFVCVTLFTYTVHSLDR 313
            L+++A FA AP+L    +G+M YV+  Y+S E + +  H AQE ENRFWT  AF FS A+++V DSP+A+GQWS TLG V V +FT +VH  DR
Sbjct:   55 LVVMAFFAYAPLLCASWIGIM-YVIGLYLSTESSKWRWHDAQEFENRFWTGTAFLFSAAVLYVKDSPLAVGQWSSTLGLVLVFIFTMSVHFFDR 147          
BLAST of mRNA_H-elongata_contig163456.4017.1 vs. uniprot
Match: A0A5D6YA76_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YA76_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 4.510e-17
Identity = 49/93 (52.69%), Postives = 63/93 (67.74%), Query Frame = 2
Query:   38 LLILAAFAVAPVLVIV-LGLMSYVVWWYVSKEGTSFLHHAQEHENRFWTTVAFCFSGALVFVHDSPVALGQWSPTLGFVCVTLFTYTVHSLDR 313
            LL++A FA AP+L    LG+M YVV  Y+S E   + H AQE ENRFWT  AF FS AL+++ DSP A+G+W+ +LG + V  FT  VH LDR
Sbjct:   73 LLVMAFFAYAPLLCASWLGIM-YVVGLYLSTESNWWWHDAQEFENRFWTFTAFMFSSALLYIKDSPFAVGRWNASLGMLLVLFFTAGVHFLDR 164          
BLAST of mRNA_H-elongata_contig163456.4017.1 vs. uniprot
Match: A0A662X9P1_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662X9P1_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 6.150e-17
Identity = 48/93 (51.61%), Postives = 63/93 (67.74%), Query Frame = 2
Query:   38 LLILAAFAVAPVLVIV-LGLMSYVVWWYVSKEGTSFLHHAQEHENRFWTTVAFCFSGALVFVHDSPVALGQWSPTLGFVCVTLFTYTVHSLDR 313
            L+++A FA AP+L    LG+M YV+  Y+S E     H AQE ENRFWT  AF FS A++++ DSP+A+GQW+ TLG V V  FT +VH  DR
Sbjct:   72 LVVMAFFAYAPLLCASWLGIM-YVIGLYLSTESNWRWHDAQEFENRFWTGTAFLFSAAVLYIKDSPLAVGQWNSTLGLVLVFSFTMSVHYFDR 163          
BLAST of mRNA_H-elongata_contig163456.4017.1 vs. uniprot
Match: A0A225WYB2_9STRA (Uncharacterized protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WYB2_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 8.390e-17
Identity = 49/93 (52.69%), Postives = 63/93 (67.74%), Query Frame = 2
Query:   38 LLILAAFAVAPVLVIV-LGLMSYVVWWYVSKEGTSFLHHAQEHENRFWTTVAFCFSGALVFVHDSPVALGQWSPTLGFVCVTLFTYTVHSLDR 313
            L+I+A FA AP+L    LG+M YV+  Y+S E     H AQE ENRFWT  AF FS A++++ DSP+A+GQW+ TLG V V  FT +VH  DR
Sbjct:   65 LVIMAFFAYAPLLCASWLGIM-YVIGLYLSTESNWRWHDAQEFENRFWTGTAFMFSAAVLYIKDSPLAVGQWNSTLGLVLVFGFTMSVHFFDR 156          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig163456.4017.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K785_9PHAE5.480e-4882.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G3Z8_ECTSI8.320e-4682.65Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
F0WSR9_9STRA1.890e-2049.02Uncharacterized protein AlNc14C237G9414 n=2 Tax=Al... [more]
A0A2P4YCM6_9STRA2.940e-1752.69Uncharacterized protein n=1 Tax=Phytophthora palmi... [more]
A0A7S0FB27_9STRA3.170e-1748.98Hypothetical protein (Fragment) n=1 Tax=Rhizosolen... [more]
A0A2D4C4B6_PYTIN3.290e-1751.61Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A0P1AH66_PLAHL3.300e-1752.13Uncharacterized protein n=1 Tax=Plasmopara halsted... [more]
A0A5D6YA76_9STRA4.510e-1752.69Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A662X9P1_9STRA6.150e-1751.61Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]
A0A225WYB2_9STRA8.390e-1752.69Uncharacterized protein n=1 Tax=Phytophthora megak... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig163456contigH-elongata_contig163456:405..1242 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size321
Cds size318
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929956.6519608-CDS-H-elongata_contig163456:405..5661622929956.6519608-CDS-H-elongata_contig163456:405..566Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig163456 406..566 -
1691679222.8888674-CDS-H-elongata_contig163456:405..5661691679222.8888674-CDS-H-elongata_contig163456:405..566Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig163456 406..566 -
1622929956.681014-CDS-H-elongata_contig163456:1085..12421622929956.681014-CDS-H-elongata_contig163456:1085..1242Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig163456 1086..1242 -
1691679222.8990984-CDS-H-elongata_contig163456:1085..12421691679222.8990984-CDS-H-elongata_contig163456:1085..1242Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig163456 1086..1242 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig163456.4017.1prot_H-elongata_contig163456.4017.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig163456 406..1242 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig163456.4017.1

>prot_H-elongata_contig163456.4017.1 ID=prot_H-elongata_contig163456.4017.1|Name=mRNA_H-elongata_contig163456.4017.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=106bp
PRDSGGVTLGAAAAHLGGVCGSPGPGDRSGANVIRGVVVRVQGGHFFPAS
RTGTRKPLLDNCGVLLLRGAGVCPRQSCGPWAVVADLGLRVRDAVHLHGA
QPRSTG
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mRNA from alignment at H-elongata_contig163456:405..1242-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig163456.4017.1 ID=mRNA_H-elongata_contig163456.4017.1|Name=mRNA_H-elongata_contig163456.4017.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=838bp|location=Sequence derived from alignment at H-elongata_contig163456:405..1242- (Himanthalia elongata Himel1 dioecious)
CCTCGCGACTCTGGTGGTGTTACTCTTGGGGCTGCTGCTGCTCATCTTGG CGGCGTTTGCGGTAGCCCCGGTCCTGGTGATCGTTCTGGGGCTAATGTCA TACGTGGTGTGGTGGTACGTGTCCAAGGAGGGCACTTCTTTCCTGCATCA CGCACAGGTGGGTTTCTAGTTGTGTGTGGAAACGACGGGCGTGCCGCGAC CACGTGTGTAGTGGTTGGTGTGTTGACTATGCCCCGACCCCGATATATTG CATTCAGTTTGATGAGATGTTCGCTTCCGCCTTGCGAAACTCGAAATACG TCACCCCGGGGTCAAGCGACATTGCCGTTGCTGTTGTGGGAACACGAGTA CATATCGCCTCTTTTTTAAGGGCCGGGGCCATGCTCTGAAGCCTCTTATC ACAGCGCAGTAGCAGATAAACGCAGTCGTAACGCCCCCCCCCCGGGGGAT AGGAGACGGCAGTCACATGAAGCAAGAGTACCCACACGAAAGTCACACGC GTTTTGGTCTGTACTCTGTGTCGCGTTTACTAGAGACGGCATATATCATC GAAACCCAGGGCCCTGGTTCTCACGAATAGCACATGGTCCGCCCAATATA GAAGGACTGTCGCCGCCGCCGATCTCCCTTGAAATCTTCTGAACCGCGTT CTCGCCCACCTCGATCCTCGAATCAGGAACACGAAAACCGCTTCTGGACA ACTGTGGCGTTCTGCTTCTCCGGGGCGCTGGTGTTTGTCCACGACAGTCC TGTGGCCCTTGGGCAGTGGTCGCCGACCTTGGGCTTCGTGTGCGTGACGC TGTTCACCTACACGGTGCACAGCCTCGATCGACAGGTG
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Coding sequence (CDS) from alignment at H-elongata_contig163456:405..1242-

>mRNA_H-elongata_contig163456.4017.1 ID=mRNA_H-elongata_contig163456.4017.1|Name=mRNA_H-elongata_contig163456.4017.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=636bp|location=Sequence derived from alignment at H-elongata_contig163456:405..1242- (Himanthalia elongata Himel1 dioecious)
CCTCGCGACTCTGGTGGTGTTACTCTTGGGGCTGCTGCTGCTCATCTTGG
CGGCGTTTGCGGTAGCCCCGGTCCTGGTGATCGTTCTGGGGCTAATGTCA
TACGTGGTGTGGTGGTACGTGTCCAAGGAGGGCACTTCTTTCCTGCATCA
CGCACAGCCTCGCGACTCTGGTGGTGTTACTCTTGGGGCTGCTGCTGCTC
ATCTTGGCGGCGTTTGCGGTAGCCCCGGTCCTGGTGATCGTTCTGGGGCT
AATGTCATACGTGGTGTGGTGGTACGTGTCCAAGGAGGGCACTTCTTTCC
TGCATCACGCACAGGAACACGAAAACCGCTTCTGGACAACTGTGGCGTTC
TGCTTCTCCGGGGCGCTGGTGTTTGTCCACGACAGTCCTGTGGCCCTTGG
GCAGTGGTCGCCGACCTTGGGCTTCGTGTGCGTGACGCTGTTCACCTACA
CGGTGCACAGCCTCGATCGACAGGTGAACACGAAAACCGCTTCTGGACAA
CTGTGGCGTTCTGCTTCTCCGGGGCGCTGGTGTTTGTCCACGACAGTCCT
GTGGCCCTTGGGCAGTGGTCGCCGACCTTGGGCTTCGTGTGCGTGACGCT
GTTCACCTACACGGTGCACAGCCTCGATCGACAGGT
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