mRNA_H-elongata_contig16318.4007.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig16318.4007.1 vs. uniprot
Match: D8LU57_ECTSI (UEV domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LU57_ECTSI) HSP 1 Score: 267 bits (682), Expect = 2.060e-81 Identity = 129/240 (53.75%), Postives = 164/240 (68.33%), Query Frame = 3
Query: 3 CPSYGRTGTKSLHDALEILGFGPCYHMFSVFNDPTGIHAKLWLDGYQGRGLSVKKIFEGYKAVTDWPGADFYQEILREYPNAKVIATQRDPDEWWKSVIGSIHQKAPKSRLWGLFFYRVFIPRQRKHQYMVRHIATLGMSEEDAKADYIHHNKEIKENVPA---KQLLEFSVKQGWKPLCEFLGVPVPDVPFPRSNSRHEFHQAIVGRTSLVGWAIMMAVAGILASGVWMVSFVAGKEAG 713
CP+YGRTGTKSL ALEILGFGPCYHM S+ H +LW+DG+QGRGL V KI +GYKAV DWP A FY+E+L+ P+AKVI T RDPD WW S++ SIH K P WG+FF V R +++M+R++ T M E++AKADY+ HNKE+ +V A ++LLEFSV+QGW PLC+FL V VPDVPFP+ NSR E + + R + GW +M A + + V SF GK AG
Sbjct: 188 CPNYGRTGTKSLKAALEILGFGPCYHMVSIVESHLKNHPQLWVDGFQGRGLDVNKILDGYKAVVDWPAASFYKEVLQSNPDAKVIMTVRDPDAWWNSMVASIHTKNPVLGGWGIFFLEVLKSDVRLYKHMLRYMKTHTMEEDEAKADYVRHNKEVLAHVGADNGRELLEFSVEQGWGPLCKFLDVSVPDVPFPKVNSREEL-KIRLNRFNRHGWLLMAATVTVAGASVAAASFFGGKRAG 426
BLAST of mRNA_H-elongata_contig16318.4007.1 vs. uniprot
Match: UPI0013EE8A93 (sulfotransferase family protein n=1 Tax=Ktedonosporobacter rubrisoli TaxID=2509675 RepID=UPI0013EE8A93) HSP 1 Score: 186 bits (471), Expect = 1.600e-52 Identity = 93/205 (45.37%), Postives = 128/205 (62.44%), Query Frame = 3
Query: 12 YGRTGTKSLHDALEILGFGPCYHMFSVFNDPTGIHAKLWLDGYQGRGLSVKKIFEGYKAVTDWPGADFYQEILREYPNAKVIATQRDPDEWWKSVIGSIHQKAPKSRL----WGLFFYRVFIPRQRKHQYMVRHI---ATLG---MSEEDAKADYIHHNKEIKENVPAKQLLEFSVKQGWKPLCEFLGVPVPDVPFPRSNSRHEF 596
+GRTGT SL ALE+LGFGPCYHM VF P H KLW + GR ++ IF Y+A DWPG FY+E+++ YP AKV+ T RDP++W++S +I+Q +R + LF R+F R R+ M+ + T G + +E A + HN+E+K +VPA++LL ++VK+GW+PLC FLGVPVP PFP N R F
Sbjct: 15 FGRTGTYSLKVALELLGFGPCYHMREVFQHPE--HVKLWNEAIAGRDVAWNAIFGTYRACVDWPGCTFYKELMQAYPEAKVLLTVRDPEKWYESAYQTIYQVTTTTRSPFMSFSLFAARLFFVRMRRTIRMIDALIWNGTFGGNFLDKELALEIFAEHNEEVKRSVPAERLLIYNVKEGWEPLCAFLGVPVPSTPFPHVNDRENF 217
BLAST of mRNA_H-elongata_contig16318.4007.1 vs. uniprot
Match: A0A8J3IPU8_9CHLR (Sulfotransferase family protein n=1 Tax=Reticulibacter mediterranei TaxID=2778369 RepID=A0A8J3IPU8_9CHLR) HSP 1 Score: 171 bits (432), Expect = 1.360e-46 Identity = 87/206 (42.23%), Postives = 123/206 (59.71%), Query Frame = 3
Query: 12 YGRTGTKSLHDALEILGFGPCYHMFSVFNDPTGIHAKLWLDGYQGRGLSVKKIFEGYKAVTDWPGADFYQEILREYPNAKVIATQRDPDEWWKSVIGSIHQ-----KAPKSRLWGLFFYRVFIPRQRKHQYMVRHIATLGM------SEEDAKADYIHHNKEIKENVPAKQLLEFSVKQGWKPLCEFLGVPVPDVPFPRSNSRHEF 596
+GRTGT+SL +ALEILGFGPCYHM F P H W +G + K+F Y+A DWP FY++++ YP+AKV+ + RDP++W++SV +I+Q +P + L+ L R+ P + MV + G +E A + + HN+E+K VP ++LL +SVK+GW+PLC FL VPVPDVPFP N R F
Sbjct: 26 FGRTGTRSLKEALEILGFGPCYHMVEAFEHPE--HVPTWNAATRGEPVDWTKLFRDYQATVDWPACTFYKQLMDTYPDAKVLLSVRDPEKWYESVSSTIYQVSRRSSSPFAPLFMLLM-RLIRPGVTEIVSMVNRLIWQGTFQQRFEDKEYAISVFNQHNEEVKNYVPPEKLLVYSVKEGWEPLCSFLDVPVPDVPFPHLNDRENF 228
BLAST of mRNA_H-elongata_contig16318.4007.1 vs. uniprot
Match: A0A4V0Z0L2_9CHLR (Sulfotransferase family protein n=2 Tax=Ktedonosporobacter rubrisoli TaxID=2509675 RepID=A0A4V0Z0L2_9CHLR) HSP 1 Score: 170 bits (430), Expect = 1.510e-46 Identity = 86/205 (41.95%), Postives = 123/205 (60.00%), Query Frame = 3
Query: 12 YGRTGTKSLHDALEILGFGPCYHMFSVFNDPTGIHAKLWLDGYQGRGLSVKKIFEGYKAVTDWPGADFYQEILREYPNAKVIATQRDPDEWWKSVIGSIHQKAPK----SRLWGLFFYRVFIPRQRKHQYMVRHI---ATLGMSEED---AKADYIHHNKEIKENVPAKQLLEFSVKQGWKPLCEFLGVPVPDVPFPRSNSRHEF 596
+GRTGT SL ALE LGF PCYHM VF HA +W QG ++ + + + Y+A DWPG FY+E++ YP AKV+ T RDP++W++S + +I+Q A + + GL +P R+ M++ + T G D A A + H +E+K +VPA++LL ++VK+GW+PLC FLGVPVP PFP N R +F
Sbjct: 8 FGRTGTLSLKTALEELGFNPCYHMVEVFKHRE--HADIWYAAAQGEPVNWRALLKEYQATVDWPGCTFYKELMEVYPEAKVLLTVRDPEKWYESAMSTIYQSAERRGLVQNIMGLM-----MPNMRRFVRMIKAVIWNGTFGGEFPDKAHAIAVFERHIEEVKRSVPAERLLIYNVKEGWEPLCAFLGVPVPSTPFPHINDREDF 205
BLAST of mRNA_H-elongata_contig16318.4007.1 vs. uniprot
Match: UPI001C3F30C8 (sulfotransferase family protein n=1 Tax=Herbidospora cretacea TaxID=28444 RepID=UPI001C3F30C8) HSP 1 Score: 166 bits (421), Expect = 1.880e-45 Identity = 85/206 (41.26%), Postives = 121/206 (58.74%), Query Frame = 3
Query: 12 YGRTGTKSLHDALEILGFGPCYHMFSVFNDPTGIHAKLWLDGYQGRGLSVKKIFEGYKAVTDWPGADFYQEILREYPNAKVIATQRDPDEWWKSVIGSI--HQKAPKSRLWGLFFYRVFIPRQRKH-QYMVRHIATLGMSEEDAKAD--------YIHHNKEIKENVPAKQLLEFSVKQGWKPLCEFLGVPVPDVPFPRSNSRHEF 596
+GRTGT SL ALE+LGFGPCYHM + P + + WLD GR IF G+++ D+P +++E+ YP AKVI T RDPD W++S +I HQ P+ +LW +R+ + R + Q+ + T+ D + D + HN+E++ +PA++LL F +QGW+PLC FLGVP+PDVPFP N R EF
Sbjct: 11 FGRTGTLSLKAALELLGFGPCYHMADIVEHPRRV--RQWLDVGDGRTADWDAIFRGFRSAVDFPAVSYWRELTGHYPAAKVILTVRDPDAWYESAQQTIFHHQIEPR-QLWRRLVHRLVLKRVPDYAQFPLMAWTTVAARVFDGRLDDRDHCIEVFRRHNEEVRATIPAERLLVFECRQGWEPLCRFLGVPIPDVPFPHVNDRTEF 213
BLAST of mRNA_H-elongata_contig16318.4007.1 vs. uniprot
Match: A0A7W1ABR5_9ACTN (Sulfotransferase family protein n=1 Tax=Rubrobacteraceae bacterium TaxID=2740537 RepID=A0A7W1ABR5_9ACTN) HSP 1 Score: 165 bits (418), Expect = 1.040e-44 Identity = 97/237 (40.93%), Postives = 130/237 (54.85%), Query Frame = 3
Query: 12 YGRTGTKSLHDALEILGFGPCYHMFSVFNDPTGIHAKLWLDGYQGRGLSVKKIFEGYKAVTDWPGADFYQEILREYPNAKVIATQRDPDEWW---KSVIGSIHQKAPKSRLWGLFFYRVFIPRQRKHQYMVRHIATLGMSE---------EDAKADYIHHNKEIKENVPAKQLLEFSVKQGWKPLCEFLGVPVP-DVPFPRSNSRHEFHQAIVGRTSLVGWAIMMAVA---GILASG 674
+GRTGT SL ALE LGFGPCYHM +F P H LW +G + ++IF GY+A TDWPG FY+E++ YP AKVI T RDP+ W+ +S I + + A S L+ L F+PR R + V + L ++ E A + N+E++E VPA++LL + VK+GW PLC FLGV P D PFP N F I +L A + VA G+L +G
Sbjct: 10 FGRTGTASLKGALEELGFGPCYHMSELFEHPE--HVPLWEAAGRGEPVDWEEIFYGYEATTDWPGGAFYEELMERYPEAKVILTVRDPESWYESARSTIFGMQRVASSSPLFSLA--ATFVPRIRSIRRAVLMVTGLAFADMFDGRFEDREYAVGVFEQWNEEVQERVPAERLLVYEVKEGWGPLCAFLGVEAPEDKPFPHLNDAEVFRGRIRRMRALTAAAALAVVALTFGVLLAG 242
BLAST of mRNA_H-elongata_contig16318.4007.1 vs. uniprot
Match: A0A2E5M4R1_9GAMM (Sulfotransferase family protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A2E5M4R1_9GAMM) HSP 1 Score: 163 bits (413), Expect = 1.390e-44 Identity = 78/208 (37.50%), Postives = 123/208 (59.13%), Query Frame = 3
Query: 12 YGRTGTKSLHDALEILGFGPCYHMFSVFNDPTGIHAKLWLDGYQGRGLSVKKIFEGYKAVTDWPGADFYQEILREYPNAKVIATQRDPDEWWKSVIGSIHQK--------APKSRL-WGLFFYRVFIPRQRKHQYMVRHIATLGMSEEDAKADYIHHNKEIKENVPAKQLLEFSVKQGWKPLCEFLGVPVPDVPFPRSNSRHEFHQAI 608
+GRTGT SL +ALE LGF CYHMF V P H + W ++G G+ +F+GY+A DWP +F++E + YP+AKVI + RDP+ W+ SV+ +I++ AP+S + + L + +F R + ++++ Y+ HN+++++ VPA++LLEF +QGW PLC FLG VPD +PR N+ +F + +
Sbjct: 10 FGRTGTTSLKEALERLGFDKCYHMFEVMRHPD--HMQQWQSAHRGEGVDWDALFQGYQAAVDWPSCNFWREQMAYYPDAKVILSLRDPERWYNSVMNTIYKSSVAMRDASAPQSNMVFELIWDGIFEGRMEEKEFVI--------------GKYLEHNQQVRDGVPAERLLEFDPEQGWGPLCAFLGCLVPDEEYPRLNTSEDFGKLV 201
BLAST of mRNA_H-elongata_contig16318.4007.1 vs. uniprot
Match: A0A4R4XJW2_9ACTN (Sulfotransferase family protein n=2 Tax=unclassified Actinomadura TaxID=2626254 RepID=A0A4R4XJW2_9ACTN) HSP 1 Score: 163 bits (413), Expect = 2.740e-44 Identity = 87/214 (40.65%), Postives = 119/214 (55.61%), Query Frame = 3
Query: 12 YGRTGTKSLHDALEILGFGPCYHMFSVFNDPTGIHAKLWLDGYQGRGLSVKKIFEGYKAVTDWPGADFYQEILREYPNAKVIATQRDPDEWWKSVIGSI-------HQKAPKSRLWGLFFYRVFIPRQRKHQYMVRHIATLG----MSEEDAKADYIH-HNKEIKENVPAKQLLEFSVKQGWKPLCEFLGVPVPDVPFPRSNSRHEFHQAIVGR 617
+GRTGT SL ALE LGFGPCYHM+ V ++P I + WLD G ++F GY + DWP A +++E+ YP+AKV+ T RDP W+ S+ +I + +P+ R+ R R + + I + + D D H H E+K +P +LL F V +GW+PLC FLGVPVPD PFPRSN R EFH+ + GR
Sbjct: 8 FGRTGTASLQTALEQLGFGPCYHMWGVISEPHRI--RHWLDTEDGGDPDWDEVFAGYASAVDWPAASYWRELADHYPDAKVVLTVRDPARWYDSISSTIFDHIQGERRPSPRQRIVRWLVARRSPDLARLNDLVETTIVDRAFGGRIEDRDHVLDVFHRHVAEVKAAIPDGRLLVFDVAEGWEPLCAFLGVPVPDGPFPRSNDRAEFHRHLSGR 219
BLAST of mRNA_H-elongata_contig16318.4007.1 vs. uniprot
Match: A0A543N9F6_9ACTN (Uncharacterized protein n=1 Tax=Haloactinospora alba TaxID=405555 RepID=A0A543N9F6_9ACTN) HSP 1 Score: 162 bits (411), Expect = 2.900e-44 Identity = 85/199 (42.71%), Postives = 112/199 (56.28%), Query Frame = 3
Query: 12 YGRTGTKSLHDALEILGFGPCYHMFSVFNDPTGIHAKLWLDGYQGRGLSVKKIFEGYKAVTDWPGADFYQEILREYPNAKVIATQRDPDEWWKSVIGSIHQKAPKSRLWGLFFYRVFIPRQRKHQYMVRHIATLGMSEEDAKADYIHHNKEIKENVPAKQLLEFSVKQGWKPLCEFLGVPVPDVPFPRSNSRHEFHQAI 608
+GRTGT SL ALE LGFGPCYHM + P A LWL G+ +IF+GY+A DWPG F++E+ R+YP AKVI T RDP+ WW+SV + G R + ++ M + E A + HN+E++ +VPA+QLL F V QGW+PLC+FLG PD PFP N EFH+ +
Sbjct: 8 FGRTGTLSLKSALERLGFGPCYHMVELLKRPE--QAPLWLSAADGQA-DWPRIFDGYQATVDWPGCAFWRELTRQYPQAKVILTVRDPERWWQSVNSTFFNNDS-----GALPSREGPMGELINKLMAGVLDGGPDDRERAITAFQRHNEEVQASVPAEQLLVFEVAQGWQPLCDFLGATPPDEPFPHVNDSSEFHRIL 198
BLAST of mRNA_H-elongata_contig16318.4007.1 vs. uniprot
Match: A0A5D0NQY9_9ACTN (Sulfotransferase family protein n=4 Tax=Actinomadura TaxID=1988 RepID=A0A5D0NQY9_9ACTN) HSP 1 Score: 163 bits (412), Expect = 3.960e-44 Identity = 87/209 (41.63%), Postives = 115/209 (55.02%), Query Frame = 3
Query: 12 YGRTGTKSLHDALEILGFGPCYHMFSVFNDPTGIHAKLWLDGYQGRGLSVKKIFEGYKAVTDWPGADFYQEILREYPNAKVIATQRDPDEWWKSVIGSIHQKA-------PKSRLWGLFFYR-----VFIPRQRKHQYMVRHIATLGMSEEDAKADYIHHNKEIKENVPAKQLLEFSVKQGWKPLCEFLGVPVPDVPFPRSNSRHEFHQ 602
+GRTGT SL ALE LG GPCYHM +V +P + + WLD +GR +F+G++A DWP A +++E+ YP+AKVI T RDP W+ SV +I +A P+ R+ R PR + R E A + H E+KE VPA++LL F V+ GW PLC FLGVPVPD PFP SN R +H+
Sbjct: 9 FGRTGTASLKAALERLGHGPCYHMSTVIAEPRRV--RQWLDVGEGRAADWDALFDGFRAAIDWPAASYWRELAAHYPDAKVILTVRDPARWYDSVSSTIFARALAERRLPPRRRMVRWLVARRSPDFALYPRMARATVFDRVFGGRIDDREHVLAVFERHVAEVKEAVPAERLLVFDVRDGWAPLCAFLGVPVPDEPFPESNERAAWHR 215 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig16318.4007.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig16318.4007.1 >prot_H-elongata_contig16318.4007.1 ID=prot_H-elongata_contig16318.4007.1|Name=mRNA_H-elongata_contig16318.4007.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=243bp MFSVFNDPTGIHAKLWLDGYQGRGLSVKKIFEGYKAVTDWPGADFYQEILback to top mRNA from alignment at H-elongata_contig16318:912..4754+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig16318.4007.1 ID=mRNA_H-elongata_contig16318.4007.1|Name=mRNA_H-elongata_contig16318.4007.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3843bp|location=Sequence derived from alignment at H-elongata_contig16318:912..4754+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig16318:912..4754+ >mRNA_H-elongata_contig16318.4007.1 ID=mRNA_H-elongata_contig16318.4007.1|Name=mRNA_H-elongata_contig16318.4007.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1458bp|location=Sequence derived from alignment at H-elongata_contig16318:912..4754+ (Himanthalia elongata Himel1 dioecious)back to top |