mRNA_H-elongata_contig16318.4007.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig16318.4007.1
Unique NamemRNA_H-elongata_contig16318.4007.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig16318.4007.1 vs. uniprot
Match: D8LU57_ECTSI (UEV domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LU57_ECTSI)

HSP 1 Score: 267 bits (682), Expect = 2.060e-81
Identity = 129/240 (53.75%), Postives = 164/240 (68.33%), Query Frame = 3
Query:    3 CPSYGRTGTKSLHDALEILGFGPCYHMFSVFNDPTGIHAKLWLDGYQGRGLSVKKIFEGYKAVTDWPGADFYQEILREYPNAKVIATQRDPDEWWKSVIGSIHQKAPKSRLWGLFFYRVFIPRQRKHQYMVRHIATLGMSEEDAKADYIHHNKEIKENVPA---KQLLEFSVKQGWKPLCEFLGVPVPDVPFPRSNSRHEFHQAIVGRTSLVGWAIMMAVAGILASGVWMVSFVAGKEAG 713
            CP+YGRTGTKSL  ALEILGFGPCYHM S+       H +LW+DG+QGRGL V KI +GYKAV DWP A FY+E+L+  P+AKVI T RDPD WW S++ SIH K P    WG+FF  V     R +++M+R++ T  M E++AKADY+ HNKE+  +V A   ++LLEFSV+QGW PLC+FL V VPDVPFP+ NSR E  +  + R +  GW +M A   +  + V   SF  GK AG
Sbjct:  188 CPNYGRTGTKSLKAALEILGFGPCYHMVSIVESHLKNHPQLWVDGFQGRGLDVNKILDGYKAVVDWPAASFYKEVLQSNPDAKVIMTVRDPDAWWNSMVASIHTKNPVLGGWGIFFLEVLKSDVRLYKHMLRYMKTHTMEEDEAKADYVRHNKEVLAHVGADNGRELLEFSVEQGWGPLCKFLDVSVPDVPFPKVNSREEL-KIRLNRFNRHGWLLMAATVTVAGASVAAASFFGGKRAG 426          
BLAST of mRNA_H-elongata_contig16318.4007.1 vs. uniprot
Match: UPI0013EE8A93 (sulfotransferase family protein n=1 Tax=Ktedonosporobacter rubrisoli TaxID=2509675 RepID=UPI0013EE8A93)

HSP 1 Score: 186 bits (471), Expect = 1.600e-52
Identity = 93/205 (45.37%), Postives = 128/205 (62.44%), Query Frame = 3
Query:   12 YGRTGTKSLHDALEILGFGPCYHMFSVFNDPTGIHAKLWLDGYQGRGLSVKKIFEGYKAVTDWPGADFYQEILREYPNAKVIATQRDPDEWWKSVIGSIHQKAPKSRL----WGLFFYRVFIPRQRKHQYMVRHI---ATLG---MSEEDAKADYIHHNKEIKENVPAKQLLEFSVKQGWKPLCEFLGVPVPDVPFPRSNSRHEF 596
            +GRTGT SL  ALE+LGFGPCYHM  VF  P   H KLW +   GR ++   IF  Y+A  DWPG  FY+E+++ YP AKV+ T RDP++W++S   +I+Q    +R     + LF  R+F  R R+   M+  +    T G   + +E A   +  HN+E+K +VPA++LL ++VK+GW+PLC FLGVPVP  PFP  N R  F
Sbjct:   15 FGRTGTYSLKVALELLGFGPCYHMREVFQHPE--HVKLWNEAIAGRDVAWNAIFGTYRACVDWPGCTFYKELMQAYPEAKVLLTVRDPEKWYESAYQTIYQVTTTTRSPFMSFSLFAARLFFVRMRRTIRMIDALIWNGTFGGNFLDKELALEIFAEHNEEVKRSVPAERLLIYNVKEGWEPLCAFLGVPVPSTPFPHVNDRENF 217          
BLAST of mRNA_H-elongata_contig16318.4007.1 vs. uniprot
Match: A0A8J3IPU8_9CHLR (Sulfotransferase family protein n=1 Tax=Reticulibacter mediterranei TaxID=2778369 RepID=A0A8J3IPU8_9CHLR)

HSP 1 Score: 171 bits (432), Expect = 1.360e-46
Identity = 87/206 (42.23%), Postives = 123/206 (59.71%), Query Frame = 3
Query:   12 YGRTGTKSLHDALEILGFGPCYHMFSVFNDPTGIHAKLWLDGYQGRGLSVKKIFEGYKAVTDWPGADFYQEILREYPNAKVIATQRDPDEWWKSVIGSIHQ-----KAPKSRLWGLFFYRVFIPRQRKHQYMVRHIATLGM------SEEDAKADYIHHNKEIKENVPAKQLLEFSVKQGWKPLCEFLGVPVPDVPFPRSNSRHEF 596
            +GRTGT+SL +ALEILGFGPCYHM   F  P   H   W    +G  +   K+F  Y+A  DWP   FY++++  YP+AKV+ + RDP++W++SV  +I+Q      +P + L+ L   R+  P   +   MV  +   G        +E A + +  HN+E+K  VP ++LL +SVK+GW+PLC FL VPVPDVPFP  N R  F
Sbjct:   26 FGRTGTRSLKEALEILGFGPCYHMVEAFEHPE--HVPTWNAATRGEPVDWTKLFRDYQATVDWPACTFYKQLMDTYPDAKVLLSVRDPEKWYESVSSTIYQVSRRSSSPFAPLFMLLM-RLIRPGVTEIVSMVNRLIWQGTFQQRFEDKEYAISVFNQHNEEVKNYVPPEKLLVYSVKEGWEPLCSFLDVPVPDVPFPHLNDRENF 228          
BLAST of mRNA_H-elongata_contig16318.4007.1 vs. uniprot
Match: A0A4V0Z0L2_9CHLR (Sulfotransferase family protein n=2 Tax=Ktedonosporobacter rubrisoli TaxID=2509675 RepID=A0A4V0Z0L2_9CHLR)

HSP 1 Score: 170 bits (430), Expect = 1.510e-46
Identity = 86/205 (41.95%), Postives = 123/205 (60.00%), Query Frame = 3
Query:   12 YGRTGTKSLHDALEILGFGPCYHMFSVFNDPTGIHAKLWLDGYQGRGLSVKKIFEGYKAVTDWPGADFYQEILREYPNAKVIATQRDPDEWWKSVIGSIHQKAPK----SRLWGLFFYRVFIPRQRKHQYMVRHI---ATLGMSEED---AKADYIHHNKEIKENVPAKQLLEFSVKQGWKPLCEFLGVPVPDVPFPRSNSRHEF 596
            +GRTGT SL  ALE LGF PCYHM  VF      HA +W    QG  ++ + + + Y+A  DWPG  FY+E++  YP AKV+ T RDP++W++S + +I+Q A +      + GL      +P  R+   M++ +    T G    D   A A +  H +E+K +VPA++LL ++VK+GW+PLC FLGVPVP  PFP  N R +F
Sbjct:    8 FGRTGTLSLKTALEELGFNPCYHMVEVFKHRE--HADIWYAAAQGEPVNWRALLKEYQATVDWPGCTFYKELMEVYPEAKVLLTVRDPEKWYESAMSTIYQSAERRGLVQNIMGLM-----MPNMRRFVRMIKAVIWNGTFGGEFPDKAHAIAVFERHIEEVKRSVPAERLLIYNVKEGWEPLCAFLGVPVPSTPFPHINDREDF 205          
BLAST of mRNA_H-elongata_contig16318.4007.1 vs. uniprot
Match: UPI001C3F30C8 (sulfotransferase family protein n=1 Tax=Herbidospora cretacea TaxID=28444 RepID=UPI001C3F30C8)

HSP 1 Score: 166 bits (421), Expect = 1.880e-45
Identity = 85/206 (41.26%), Postives = 121/206 (58.74%), Query Frame = 3
Query:   12 YGRTGTKSLHDALEILGFGPCYHMFSVFNDPTGIHAKLWLDGYQGRGLSVKKIFEGYKAVTDWPGADFYQEILREYPNAKVIATQRDPDEWWKSVIGSI--HQKAPKSRLWGLFFYRVFIPRQRKH-QYMVRHIATLGMSEEDAKAD--------YIHHNKEIKENVPAKQLLEFSVKQGWKPLCEFLGVPVPDVPFPRSNSRHEF 596
            +GRTGT SL  ALE+LGFGPCYHM  +   P  +  + WLD   GR      IF G+++  D+P   +++E+   YP AKVI T RDPD W++S   +I  HQ  P+ +LW    +R+ + R   + Q+ +    T+     D + D        +  HN+E++  +PA++LL F  +QGW+PLC FLGVP+PDVPFP  N R EF
Sbjct:   11 FGRTGTLSLKAALELLGFGPCYHMADIVEHPRRV--RQWLDVGDGRTADWDAIFRGFRSAVDFPAVSYWRELTGHYPAAKVILTVRDPDAWYESAQQTIFHHQIEPR-QLWRRLVHRLVLKRVPDYAQFPLMAWTTVAARVFDGRLDDRDHCIEVFRRHNEEVRATIPAERLLVFECRQGWEPLCRFLGVPIPDVPFPHVNDRTEF 213          
BLAST of mRNA_H-elongata_contig16318.4007.1 vs. uniprot
Match: A0A7W1ABR5_9ACTN (Sulfotransferase family protein n=1 Tax=Rubrobacteraceae bacterium TaxID=2740537 RepID=A0A7W1ABR5_9ACTN)

HSP 1 Score: 165 bits (418), Expect = 1.040e-44
Identity = 97/237 (40.93%), Postives = 130/237 (54.85%), Query Frame = 3
Query:   12 YGRTGTKSLHDALEILGFGPCYHMFSVFNDPTGIHAKLWLDGYQGRGLSVKKIFEGYKAVTDWPGADFYQEILREYPNAKVIATQRDPDEWW---KSVIGSIHQKAPKSRLWGLFFYRVFIPRQRKHQYMVRHIATLGMSE---------EDAKADYIHHNKEIKENVPAKQLLEFSVKQGWKPLCEFLGVPVP-DVPFPRSNSRHEFHQAIVGRTSLVGWAIMMAVA---GILASG 674
            +GRTGT SL  ALE LGFGPCYHM  +F  P   H  LW    +G  +  ++IF GY+A TDWPG  FY+E++  YP AKVI T RDP+ W+   +S I  + + A  S L+ L     F+PR R  +  V  +  L  ++         E A   +   N+E++E VPA++LL + VK+GW PLC FLGV  P D PFP  N    F   I    +L   A +  VA   G+L +G
Sbjct:   10 FGRTGTASLKGALEELGFGPCYHMSELFEHPE--HVPLWEAAGRGEPVDWEEIFYGYEATTDWPGGAFYEELMERYPEAKVILTVRDPESWYESARSTIFGMQRVASSSPLFSLA--ATFVPRIRSIRRAVLMVTGLAFADMFDGRFEDREYAVGVFEQWNEEVQERVPAERLLVYEVKEGWGPLCAFLGVEAPEDKPFPHLNDAEVFRGRIRRMRALTAAAALAVVALTFGVLLAG 242          
BLAST of mRNA_H-elongata_contig16318.4007.1 vs. uniprot
Match: A0A2E5M4R1_9GAMM (Sulfotransferase family protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A2E5M4R1_9GAMM)

HSP 1 Score: 163 bits (413), Expect = 1.390e-44
Identity = 78/208 (37.50%), Postives = 123/208 (59.13%), Query Frame = 3
Query:   12 YGRTGTKSLHDALEILGFGPCYHMFSVFNDPTGIHAKLWLDGYQGRGLSVKKIFEGYKAVTDWPGADFYQEILREYPNAKVIATQRDPDEWWKSVIGSIHQK--------APKSRL-WGLFFYRVFIPRQRKHQYMVRHIATLGMSEEDAKADYIHHNKEIKENVPAKQLLEFSVKQGWKPLCEFLGVPVPDVPFPRSNSRHEFHQAI 608
            +GRTGT SL +ALE LGF  CYHMF V   P   H + W   ++G G+    +F+GY+A  DWP  +F++E +  YP+AKVI + RDP+ W+ SV+ +I++         AP+S + + L +  +F  R  + ++++                Y+ HN+++++ VPA++LLEF  +QGW PLC FLG  VPD  +PR N+  +F + +
Sbjct:   10 FGRTGTTSLKEALERLGFDKCYHMFEVMRHPD--HMQQWQSAHRGEGVDWDALFQGYQAAVDWPSCNFWREQMAYYPDAKVILSLRDPERWYNSVMNTIYKSSVAMRDASAPQSNMVFELIWDGIFEGRMEEKEFVI--------------GKYLEHNQQVRDGVPAERLLEFDPEQGWGPLCAFLGCLVPDEEYPRLNTSEDFGKLV 201          
BLAST of mRNA_H-elongata_contig16318.4007.1 vs. uniprot
Match: A0A4R4XJW2_9ACTN (Sulfotransferase family protein n=2 Tax=unclassified Actinomadura TaxID=2626254 RepID=A0A4R4XJW2_9ACTN)

HSP 1 Score: 163 bits (413), Expect = 2.740e-44
Identity = 87/214 (40.65%), Postives = 119/214 (55.61%), Query Frame = 3
Query:   12 YGRTGTKSLHDALEILGFGPCYHMFSVFNDPTGIHAKLWLDGYQGRGLSVKKIFEGYKAVTDWPGADFYQEILREYPNAKVIATQRDPDEWWKSVIGSI-------HQKAPKSRLWGLFFYRVFIPRQRKHQYMVRHIATLG----MSEEDAKADYIH-HNKEIKENVPAKQLLEFSVKQGWKPLCEFLGVPVPDVPFPRSNSRHEFHQAIVGR 617
            +GRTGT SL  ALE LGFGPCYHM+ V ++P  I  + WLD   G      ++F GY +  DWP A +++E+   YP+AKV+ T RDP  W+ S+  +I        + +P+ R+      R      R +  +   I        + + D   D  H H  E+K  +P  +LL F V +GW+PLC FLGVPVPD PFPRSN R EFH+ + GR
Sbjct:    8 FGRTGTASLQTALEQLGFGPCYHMWGVISEPHRI--RHWLDTEDGGDPDWDEVFAGYASAVDWPAASYWRELADHYPDAKVVLTVRDPARWYDSISSTIFDHIQGERRPSPRQRIVRWLVARRSPDLARLNDLVETTIVDRAFGGRIEDRDHVLDVFHRHVAEVKAAIPDGRLLVFDVAEGWEPLCAFLGVPVPDGPFPRSNDRAEFHRHLSGR 219          
BLAST of mRNA_H-elongata_contig16318.4007.1 vs. uniprot
Match: A0A543N9F6_9ACTN (Uncharacterized protein n=1 Tax=Haloactinospora alba TaxID=405555 RepID=A0A543N9F6_9ACTN)

HSP 1 Score: 162 bits (411), Expect = 2.900e-44
Identity = 85/199 (42.71%), Postives = 112/199 (56.28%), Query Frame = 3
Query:   12 YGRTGTKSLHDALEILGFGPCYHMFSVFNDPTGIHAKLWLDGYQGRGLSVKKIFEGYKAVTDWPGADFYQEILREYPNAKVIATQRDPDEWWKSVIGSIHQKAPKSRLWGLFFYRVFIPRQRKHQYMVRHIATLGMSEEDAKADYIHHNKEIKENVPAKQLLEFSVKQGWKPLCEFLGVPVPDVPFPRSNSRHEFHQAI 608
            +GRTGT SL  ALE LGFGPCYHM  +   P    A LWL    G+     +IF+GY+A  DWPG  F++E+ R+YP AKVI T RDP+ WW+SV  +           G    R     +  ++ M   +       E A   +  HN+E++ +VPA+QLL F V QGW+PLC+FLG   PD PFP  N   EFH+ +
Sbjct:    8 FGRTGTLSLKSALERLGFGPCYHMVELLKRPE--QAPLWLSAADGQA-DWPRIFDGYQATVDWPGCAFWRELTRQYPQAKVILTVRDPERWWQSVNSTFFNNDS-----GALPSREGPMGELINKLMAGVLDGGPDDRERAITAFQRHNEEVQASVPAEQLLVFEVAQGWQPLCDFLGATPPDEPFPHVNDSSEFHRIL 198          
BLAST of mRNA_H-elongata_contig16318.4007.1 vs. uniprot
Match: A0A5D0NQY9_9ACTN (Sulfotransferase family protein n=4 Tax=Actinomadura TaxID=1988 RepID=A0A5D0NQY9_9ACTN)

HSP 1 Score: 163 bits (412), Expect = 3.960e-44
Identity = 87/209 (41.63%), Postives = 115/209 (55.02%), Query Frame = 3
Query:   12 YGRTGTKSLHDALEILGFGPCYHMFSVFNDPTGIHAKLWLDGYQGRGLSVKKIFEGYKAVTDWPGADFYQEILREYPNAKVIATQRDPDEWWKSVIGSIHQKA-------PKSRLWGLFFYR-----VFIPRQRKHQYMVRHIATLGMSEEDAKADYIHHNKEIKENVPAKQLLEFSVKQGWKPLCEFLGVPVPDVPFPRSNSRHEFHQ 602
            +GRTGT SL  ALE LG GPCYHM +V  +P  +  + WLD  +GR      +F+G++A  DWP A +++E+   YP+AKVI T RDP  W+ SV  +I  +A       P+ R+      R        PR  +     R         E   A +  H  E+KE VPA++LL F V+ GW PLC FLGVPVPD PFP SN R  +H+
Sbjct:    9 FGRTGTASLKAALERLGHGPCYHMSTVIAEPRRV--RQWLDVGEGRAADWDALFDGFRAAIDWPAASYWRELAAHYPDAKVILTVRDPARWYDSVSSTIFARALAERRLPPRRRMVRWLVARRSPDFALYPRMARATVFDRVFGGRIDDREHVLAVFERHVAEVKEAVPAERLLVFDVRDGWAPLCAFLGVPVPDEPFPESNERAAWHR 215          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig16318.4007.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LU57_ECTSI2.060e-8153.75UEV domain-containing protein n=2 Tax=Ectocarpus T... [more]
UPI0013EE8A931.600e-5245.37sulfotransferase family protein n=1 Tax=Ktedonospo... [more]
A0A8J3IPU8_9CHLR1.360e-4642.23Sulfotransferase family protein n=1 Tax=Reticuliba... [more]
A0A4V0Z0L2_9CHLR1.510e-4641.95Sulfotransferase family protein n=2 Tax=Ktedonospo... [more]
UPI001C3F30C81.880e-4541.26sulfotransferase family protein n=1 Tax=Herbidospo... [more]
A0A7W1ABR5_9ACTN1.040e-4440.93Sulfotransferase family protein n=1 Tax=Rubrobacte... [more]
A0A2E5M4R1_9GAMM1.390e-4437.50Sulfotransferase family protein n=1 Tax=Gammaprote... [more]
A0A4R4XJW2_9ACTN2.740e-4440.65Sulfotransferase family protein n=2 Tax=unclassifi... [more]
A0A543N9F6_9ACTN2.900e-4442.71Uncharacterized protein n=1 Tax=Haloactinospora al... [more]
A0A5D0NQY9_9ACTN3.960e-4441.63Sulfotransferase family protein n=4 Tax=Actinomadu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig16318contigH-elongata_contig16318:912..4754 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score218.8
Seed ortholog evalue2.8e-54
Seed eggNOG ortholog2880.D8LU57
Preferred nameSTP22
KEGG koko:K12183
KEGG Pathwayko04144,map04144
KEGG ModuleM00409
GOsGO:0000813,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005829,GO:0005886,GO:0006508,GO:0006511,GO:0006605,GO:0006612,GO:0006623,GO:0006807,GO:0006810,GO:0006811,GO:0006820,GO:0006862,GO:0006886,GO:0007034,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009892,GO:0009898,GO:0009987,GO:0010008,GO:0010605,GO:0012505,GO:0015031,GO:0015711,GO:0015748,GO:0015833,GO:0015865,GO:0015867,GO:0015868,GO:0015893,GO:0015931,GO:0016020,GO:0016192,GO:0019222,GO:0019538,GO:0019941,GO:0030163,GO:0031090,GO:0031323,GO:0031324,GO:0031396,GO:0031397,GO:0031399,GO:0031400,GO:0031410,GO:0031982,GO:0032182,GO:0032268,GO:0032269,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0036452,GO:0042221,GO:0042493,GO:0042886,GO:0043130,GO:0043162,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0045184,GO:0045324,GO:0046618,GO:0046907,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051179,GO:0051234,GO:0051246,GO:0051248,GO:0051503,GO:0051603,GO:0051641,GO:0051649,GO:0060255,GO:0065007,GO:0070727,GO:0071702,GO:0071704,GO:0071705,GO:0071944,GO:0072594,GO:0072657,GO:0072665,GO:0072666,GO:0080090,GO:0090150,GO:0097708,GO:0098552,GO:0098562,GO:0098588,GO:0098796,GO:0098805,GO:1901264,GO:1901564,GO:1901565,GO:1901575,GO:1902914,GO:1902915,GO:1903320,GO:1903321,GO:1904669
EggNOG free text desc.Tumor susceptibility
EggNOG OGsKOG2391@1,KOG2391@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko04131,ko04147
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionUbiquitin E2 variant, N-terminal
Ec32 orthologEc-16_000310.1
Exons7
Model size1307
Cds size729
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929955.113218-UTR-H-elongata_contig16318:911..9911622929955.113218-UTR-H-elongata_contig16318:911..991Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig16318 912..991 +
1691679222.2663639-UTR-H-elongata_contig16318:911..9911691679222.2663639-UTR-H-elongata_contig16318:911..991Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig16318 912..991 +
1622929955.2370424-UTR-H-elongata_contig16318:4256..47541622929955.2370424-UTR-H-elongata_contig16318:4256..4754Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig16318 4257..4754 +
1691679222.3515275-UTR-H-elongata_contig16318:4256..47541691679222.3515275-UTR-H-elongata_contig16318:4256..4754Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig16318 4257..4754 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929955.1295838-CDS-H-elongata_contig16318:991..9921622929955.1295838-CDS-H-elongata_contig16318:991..992Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16318 992..992 +
1691679222.2780104-CDS-H-elongata_contig16318:991..9921691679222.2780104-CDS-H-elongata_contig16318:991..992Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16318 992..992 +
1622929955.1429408-CDS-H-elongata_contig16318:1553..15941622929955.1429408-CDS-H-elongata_contig16318:1553..1594Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16318 1554..1594 +
1691679222.2879794-CDS-H-elongata_contig16318:1553..15941691679222.2879794-CDS-H-elongata_contig16318:1553..1594Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16318 1554..1594 +
1622929955.1571844-CDS-H-elongata_contig16318:2132..22311622929955.1571844-CDS-H-elongata_contig16318:2132..2231Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16318 2133..2231 +
1691679222.2971523-CDS-H-elongata_contig16318:2132..22311691679222.2971523-CDS-H-elongata_contig16318:2132..2231Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16318 2133..2231 +
1622929955.1706448-CDS-H-elongata_contig16318:2634..27521622929955.1706448-CDS-H-elongata_contig16318:2634..2752Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16318 2635..2752 +
1691679222.306419-CDS-H-elongata_contig16318:2634..27521691679222.306419-CDS-H-elongata_contig16318:2634..2752Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16318 2635..2752 +
1622929955.189214-CDS-H-elongata_contig16318:3233..33851622929955.189214-CDS-H-elongata_contig16318:3233..3385Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16318 3234..3385 +
1691679222.3159485-CDS-H-elongata_contig16318:3233..33851691679222.3159485-CDS-H-elongata_contig16318:3233..3385Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16318 3234..3385 +
1622929955.207044-CDS-H-elongata_contig16318:3735..38601622929955.207044-CDS-H-elongata_contig16318:3735..3860Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16318 3736..3860 +
1691679222.3259578-CDS-H-elongata_contig16318:3735..38601691679222.3259578-CDS-H-elongata_contig16318:3735..3860Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16318 3736..3860 +
1622929955.223985-CDS-H-elongata_contig16318:4063..42561622929955.223985-CDS-H-elongata_contig16318:4063..4256Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16318 4064..4256 +
1691679222.3382845-CDS-H-elongata_contig16318:4063..42561691679222.3382845-CDS-H-elongata_contig16318:4063..4256Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16318 4064..4256 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig16318.4007.1prot_H-elongata_contig16318.4007.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig16318 992..4256 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig16318.4007.1

>prot_H-elongata_contig16318.4007.1 ID=prot_H-elongata_contig16318.4007.1|Name=mRNA_H-elongata_contig16318.4007.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=243bp
MFSVFNDPTGIHAKLWLDGYQGRGLSVKKIFEGYKAVTDWPGADFYQEIL
REYPNAKVIATQRDPDEWWKSVIGSIHQKAPKSRLWGLFFYRVFIPRQRK
HQYMVRHIATLGMSEEDAKADYIHHNKEIKENVPAKQLLEFSVKQGWKPL
CEFLGVPVPDVPFPRSNSRHEFHQAIVGRTSLVGWAIMMAVAGILASGVW
MVSFVAGKEAGVLIAVVGVFLVAFFLAHGNSMRMKTYKWKNA*
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mRNA from alignment at H-elongata_contig16318:912..4754+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig16318.4007.1 ID=mRNA_H-elongata_contig16318.4007.1|Name=mRNA_H-elongata_contig16318.4007.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3843bp|location=Sequence derived from alignment at H-elongata_contig16318:912..4754+ (Himanthalia elongata Himel1 dioecious)
TTTGTCCTAGCTACGGGAGGACAGGGACCAAGTCCTTACACGACGCGCTC GAGATCCTTGGATTCGGTCCCTGTTACCACAGTGAGTGTGCCCTCTGAAA GACAAGTAACTGACTATTAAGTTGAAATAATACAAATCCGTGTTTCTTTT TGTATCGTTTCGGCGGTGTACTTCTAGGGAACGCCAGAACATGTAGCTGT AAGGTATCAGAAGCATGGGTTGCACCGCCCCACCAGCACCATACGCCAAA GTGTCGGGTGCACTGAGATATAATTATACCGATAGTATTCACCGCAACTA ATTCCATTAAAACAACTTTTAGGGTCTATTGGATATATGTCACGAGGAGT AGACTTTGGCCGTCGACCTCCATTATAACTGCTAAAGTTATGTTTAGGGT TAGGGCTAGGGCAATTAAATTTCGATACATAACGAACTGGAAGAACTTCC CACATATTTACGGCCAATATTTCAATGCCATCTCCTGACCCTTGTACACT TTACGCAGTGCATGTTGTCCTTTTGGAAAACTTGACTGAACACTTGATAC ACCTGCTATATTTAAAAAATGGCAAAAAGCATCAACAACTCTGTCACTGG CCATGGCCTGTTACACGCTGCGATTTCCCACCCTCGACTCAGTGTTCAGC GTGTTCAACGATCCAACGGGCATTCACGCCAAGGTGAGAGGAATCAGTCA TCATGTACAGTAGGCATAACGAAGCTCTGTCTCGAGTTTCTGACCCTGCC TTCAGGCGTCATGATCGATTGTACACTATTCGATTATCCACCAAGCATGC TGTTGCTGCGCCAATTGGTTTGGGAAATGTTACACGGTAAGACGAGAAGT TGGAGTTACAACCTGTGTTATTACGTTCATGGAGCTAGTTTATGACAGAT CCCATGCTGGCGTGTTATAATTGATCTTCCATTTTGAACACTTGGGTCCA TGCCGAACGCAATTTCTGTACTTCTGGGGTCAGATCATATCGCGTAGGTC AGGCGCCAGCCTCTCCACTGGAAAAAATCCCTCGCCCAACTTCATCCGCC TTCGTAATGACGCAGCAAGACACGAAGCTCGTAGGATGTCCCAGAAAAAT GAAACATATCGTTCTGATGGTGTGTGCGTTATGATGCGATACTCGTCTTC GATGCTTGAGAGCATTGTGTCGCCCGCATGACTCGTGACTTGCCGAGGAC GTATTTTTCATTTTGCTACAGCTGTGGCTCGACGGCTACCAAGGGCGTGG CCTCTCTGTGAAGAAAATCTTTGAGGGTTACAAGGCCGTAACGGATTGGC CAGGGGCGGATTTCTATCAAGTGAGACGACTGGGAAGCCCGCGGAGACTG TTTCCACTTGTCCGTTTATAAGGCAAATCCCGACACATCTTGTAGTCACA TTACTACAATTAGTCTAGGGGTTCGCCTTATGAACGAAAACAATTTGGAG TCTGGTTCGATTCAAAAACGAAGGTAAAAACATTTGATAAAGGGCCGCCT AGGGACTTTACTTTACAGTCTTGGCGAGGGTAGTGCCCCGGAGGCGTTGA ACCAGAAAAGTCAACATTATCAATCCCGTGAGGAACAAGACAACCCATCG TGATTAGGCTCCAAGCACCTAGGATTTTCGCAGTATGTGATTGTGTTGCA TCGACCGCATTTTCCTGACCGCCGACGGCTTTCCCTCCGCCCTCCTACAC TTGGAAATATCTGGGTCGAACAGGAGATTCTACGAGAGTATCCGAATGCA AAAGTTATCGCAACTCAAAGAGACCCCGACGAGTGGTGGAAAAGTGTCAT TGGCAGCATTCACCAGAAGGCACCAAAATCTCGCCTTTGGGGTGAGGTCA AAACTCGAAGCAGAATACCATCGGTTATCTCCAAGGAAGCCAAAGGCGCC AAACCCTTCACCCATAGTATTTGCTCCGGGGTATCTGATCTCTGGTCACC CAGAGTTGGGGCCCACTTAGTGAATATCTCGAGTACTCGATGCATCGTTA TATCTTATTTTCTGCTTTCAAGGCCGAGTACCCTTTGCAGCAGTTGAGAG GTCGAAGAAGTATTGAATTCGAAACATTGTAACGACAGCGGTAAAAATCT CGCGAGTACCGACCCCGCCAACCATGGACTACCGGAGGTGACTCATCCGT ATGGCCCGCTCGTCACTTTTCCCTTGCTTTGCCCGTAGGACTTATTTTAT GTACGCACGAGAGCCCTCTTTGTCTGAAGCATGCCGGTTGCTAAGTATCC CGCACATACGGCCACATGTTTTCCCGAGATCCCCATCAAGGATTCGATCT ATTATCTTACGCGTCGATTCAGGGTTATTCTTCTATAGAGTGTTTATTCC ACGGCAGCGGAAACATCAGTACATGGTTCGCCACATCGCCACCTTGGGCA TGTCAGAGGAAGACGCTAAGGCGGACTACATCCATCACAATAAAGAGATA AAGGAAAACGTCCCAGCCAAACAGGTAACCTCGAGGGCACCCACCACACC GTAAACTTCTAGCGGTGGAACACTTTGATACCATGGGTGTTTTAAAGCTA AAAGTCGAGTTGCTGCGCTGTAGGTAGCGACCATATCGAAAGCGAATTAA GCATCTCGTGCTAGCCGTGTGCCTGTCGAAATGCCTAGAGTGTAGGCGCC GCGGTTCGTCACACTAATCGATTGTTCCTCGTTCCCTAAGGCTACTCAAG GTTTGTGCACCTGTGCCTAGCATGGCATGATAGAGCTCACCGCGTCAGCG TGTAGTATCACACTGTACTAAGGAAATAAGTGCATGACATCCGTAAGTAA TAATTTCATGTCGTTCCGACTCAGCTGCTTGAGTTCTCGGTGAAGCAAGG CTGGAAACCACTGTGCGAGTTCCTTGGGGTGCCAGTTCCAGACGTTCCCT TCCCAAGATCGAACTCTCGGCATGAGTTCCATCAGGCCATCGTCGGCAGG TATGCTCTTGTGCCAAGCAACCCAGAGGACAGGTCATGCATGTCTTGTGT AGTGCTAGCGCCGCTCAGGGAGCATGAATGAAATCACGCGCTCGCGCTCA TTCCCGACCTTGTTGATGACCACTCGAACGATCAACAGGCTGTATGCCCC GCTTGCTCAGAACTTGAACCCTATCGCCCCGCGCGCAACTCAAAAACATC AGGACTAGTTTGGTCGGATGGGCAATCATGATGGCTGTGGCGGGTATTTT GGCATCTGGCGTCTGGATGGTGTCCTTCGTCGCCGGAAAGGAGGCGGGTG TATTGATTGCGGTGGTTGGAGTGTTCCTCGTTGCTTTCTTTCTGGCCCAC GGCAATTCTATGAGGATGAAAACTTATAAGTGGAAGAATGCCTGAACAGC TGCCGAGCCTCTACCACTGCTCGTGCAGACCCTTCGCGCTGCAAGACTCA TTTTTCGGTCAATCGCGTAGGCCCTGCGATACATTTTGCGCTGATGTAGC GGGGAAGCGTTAGTCAGGTTTAGCATTTCTTAGACGAAGACAAGGGCGTG TAGAATGCTTTAGTATACTTCTCCGTGGTATGGCGCGTATAAGATTACTG ACATTGCTTATAACATGACTGGCACTGCTTAAACCATTCCGCCTGAGGAA AGTCGAAGCTTCTTGGTTAAAATGCTTGAATAGTAATCGGATGGTTCGCC GCAAACTTCCAGTATCATCGTGATGGATCTGCATAGGAAGAAAATAATGG GAAAACATCCACAGCACGTGTCGCTCACCAAGCGATGAAGCTCTTTTGCC GGGACAGTTACTGAGTCATCGAACCCTCTAGCAAACCCTATCAATCGTAA TGCCCTCATGAAAGGTTCACTTAATAATTAAAAGGAAATGCAC
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Coding sequence (CDS) from alignment at H-elongata_contig16318:912..4754+

>mRNA_H-elongata_contig16318.4007.1 ID=mRNA_H-elongata_contig16318.4007.1|Name=mRNA_H-elongata_contig16318.4007.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1458bp|location=Sequence derived from alignment at H-elongata_contig16318:912..4754+ (Himanthalia elongata Himel1 dioecious)
AATGTTCAGCGTGTTCAACGATCCAACGGGCATTCACGCCAAGTGTTCAG
CGTGTTCAACGATCCAACGGGCATTCACGCCAAGCTGTGGCTCGACGGCT
ACCAAGGGCGTGGCCTCTCTGTGAAGAAAATCTTTGAGGGTTACAAGGCC
GTAACGGATTGGCCAGGGGCGGATTTCTATCAACTGTGGCTCGACGGCTA
CCAAGGGCGTGGCCTCTCTGTGAAGAAAATCTTTGAGGGTTACAAGGCCG
TAACGGATTGGCCAGGGGCGGATTTCTATCAAGAGATTCTACGAGAGTAT
CCGAATGCAAAAGTTATCGCAACTCAAAGAGACCCCGACGAGTGGTGGAA
AAGTGTCATTGGCAGCATTCACCAGAAGGCACCAAAATCTCGCCTTTGGG
GAGATTCTACGAGAGTATCCGAATGCAAAAGTTATCGCAACTCAAAGAGA
CCCCGACGAGTGGTGGAAAAGTGTCATTGGCAGCATTCACCAGAAGGCAC
CAAAATCTCGCCTTTGGGGGTTATTCTTCTATAGAGTGTTTATTCCACGG
CAGCGGAAACATCAGTACATGGTTCGCCACATCGCCACCTTGGGCATGTC
AGAGGAAGACGCTAAGGCGGACTACATCCATCACAATAAAGAGATAAAGG
AAAACGTCCCAGCCAAACAGGGTTATTCTTCTATAGAGTGTTTATTCCAC
GGCAGCGGAAACATCAGTACATGGTTCGCCACATCGCCACCTTGGGCATG
TCAGAGGAAGACGCTAAGGCGGACTACATCCATCACAATAAAGAGATAAA
GGAAAACGTCCCAGCCAAACAGCTGCTTGAGTTCTCGGTGAAGCAAGGCT
GGAAACCACTGTGCGAGTTCCTTGGGGTGCCAGTTCCAGACGTTCCCTTC
CCAAGATCGAACTCTCGGCATGAGTTCCATCAGGCCATCGTCGGCAGCTG
CTTGAGTTCTCGGTGAAGCAAGGCTGGAAACCACTGTGCGAGTTCCTTGG
GGTGCCAGTTCCAGACGTTCCCTTCCCAAGATCGAACTCTCGGCATGAGT
TCCATCAGGCCATCGTCGGCAGGACTAGTTTGGTCGGATGGGCAATCATG
ATGGCTGTGGCGGGTATTTTGGCATCTGGCGTCTGGATGGTGTCCTTCGT
CGCCGGAAAGGAGGCGGGTGTATTGATTGCGGTGGTTGGAGTGTTCCTCG
TTGCTTTCTTTCTGGCCCACGGCAATTCTATGAGGATGAAAACTTATAAG
TGGAAGAATGCCTGAGACTAGTTTGGTCGGATGGGCAATCATGATGGCTG
TGGCGGGTATTTTGGCATCTGGCGTCTGGATGGTGTCCTTCGTCGCCGGA
AAGGAGGCGGGTGTATTGATTGCGGTGGTTGGAGTGTTCCTCGTTGCTTT
CTTTCTGGCCCACGGCAATTCTATGAGGATGAAAACTTATAAGTGGAAGA
ATGCCTGA
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