mRNA_H-elongata_contig163049.4002.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig163049.4002.1
Unique NamemRNA_H-elongata_contig163049.4002.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig163049.4002.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig163049contigH-elongata_contig163049:297..1330 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size360
Cds size183
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig163049.4002.1prot_H-elongata_contig163049.4002.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig163049 473..1329 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929954.7817523-UTR-H-elongata_contig163049:296..4721622929954.7817523-UTR-H-elongata_contig163049:296..472Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig163049 297..472 +
1691679222.1518388-UTR-H-elongata_contig163049:296..4721691679222.1518388-UTR-H-elongata_contig163049:296..472Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig163049 297..472 +
1622929954.823817-UTR-H-elongata_contig163049:1329..13301622929954.823817-UTR-H-elongata_contig163049:1329..1330Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig163049 1330..1330 +
1691679222.182627-UTR-H-elongata_contig163049:1329..13301691679222.182627-UTR-H-elongata_contig163049:1329..1330Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig163049 1330..1330 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929954.794609-CDS-H-elongata_contig163049:472..5381622929954.794609-CDS-H-elongata_contig163049:472..538Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig163049 473..538 +
1691679222.1603296-CDS-H-elongata_contig163049:472..5381691679222.1603296-CDS-H-elongata_contig163049:472..538Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig163049 473..538 +
1622929954.8094096-CDS-H-elongata_contig163049:1212..13291622929954.8094096-CDS-H-elongata_contig163049:1212..1329Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig163049 1213..1329 +
1691679222.173543-CDS-H-elongata_contig163049:1212..13291691679222.173543-CDS-H-elongata_contig163049:1212..1329Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig163049 1213..1329 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig163049.4002.1

>prot_H-elongata_contig163049.4002.1 ID=prot_H-elongata_contig163049.4002.1|Name=mRNA_H-elongata_contig163049.4002.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=61bp
MEGPPTATAMHWGSVWTSISPRAPPIKSEGNNLGTDDTGRDGGTTHSNAS
GLRMDFDILK*
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mRNA from alignment at H-elongata_contig163049:297..1330+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig163049.4002.1 ID=mRNA_H-elongata_contig163049.4002.1|Name=mRNA_H-elongata_contig163049.4002.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1034bp|location=Sequence derived from alignment at H-elongata_contig163049:297..1330+ (Himanthalia elongata Himel1 dioecious)
CTTCGATCACTTCAAATCATTTTCGCTTTTTACAACAGAGGGTGGATAAG
CGCAAACCTAATTGGAATGCTTCCCACGCGGCGCTCGCCCACGGTCTCCA
CCGGCCTCGCACCGCCCGCAGGCGCCTCCAATTAAAAGCGAGGGAAATAA
TCCAGGAACAGACGGCACAGGAGAGGATGGAGGGGCCACCCACAGCCACA
GCAATGCATTGGGGCTCCGTATGGACTTCGATATCCCCTAGGGTGAGCTG
ATTTCGTTTGCGCAGGGTAGATATTGAGACAACACAGTATATATACACAT
ATGACAGAGCACGTACTCACACCGTCAACGAACGAAATCAATTGAGATAC
TCTTATGTATAATGCAACCATCTGCTGAGCTTAATTTTTTTTAATTAGAC
CGAGTAGTTATCTCCCTAGCTTCTTGGTTGACTGACCAATGAAAACGAAA
ATCATACCCAAATGGGGTCCCCGATATTATACGGTTGACCCGATGTACTT
ACTCTACAGGAACACGATTAACACATGTTATGTGACGATTTTGTTATCAA
AGGTAGTAGTATTGACATTCAAACCTGACGGTAGTTGGTCCCCTGGATTT
CACCTCCCACGGTGCTAAGAATGCGTGGATGATCGGAGGGGTGGAATTAG
TTCAAGTTTTTAAAATAATATTAGAGGGCTACAGCAGTAGCAGTAGCAGT
GGCAGTAGTATGCAAGGGTCGGTTCTTCAAAACGATCCTGGAGTCTGGAG
AACCGCCCCAAAGAAACGCTATATTCTGAGCAGTCAAGAGAGCCCCTTCG
ATCACGTCAAATAATTTTTGCTTTCCACAACAGAAGGTGGATAAGCGCAA
AACTGTTTGAAACGCTTCCCATGCGGCGCTCGCCCACGGTCTCCACCGAC
CTCGCACCGCCTGCAGGCGCCTCCAATTAAAAGTGAGGGAAATAATCTAG
GGACAGACGACACAGGACGGGATGGAGGGACCACCCACAGCAATGCATCG
GGGCTCCGTATGGACTTCGATATCCTCAAGTAGG
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Coding sequence (CDS) from alignment at H-elongata_contig163049:297..1330+

>mRNA_H-elongata_contig163049.4002.1 ID=mRNA_H-elongata_contig163049.4002.1|Name=mRNA_H-elongata_contig163049.4002.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=366bp|location=Sequence derived from alignment at H-elongata_contig163049:297..1330+ (Himanthalia elongata Himel1 dioecious)
ATGGAGGGGCCACCCACAGCCACAGCAATGCATTGGGGCTCCGTATGGAC
TTCGATATCCCCTAGGATGGAGGGGCCACCCACAGCCACAGCAATGCATT
GGGGCTCCGTATGGACTTCGATATCCCCTAGGGCGCCTCCAATTAAAAGT
GAGGGAAATAATCTAGGGACAGACGACACAGGACGGGATGGAGGGACCAC
CCACAGCAATGCATCGGGGCTCCGTATGGACTTCGATATCCTCAAGTAGG
CGCCTCCAATTAAAAGTGAGGGAAATAATCTAGGGACAGACGACACAGGA
CGGGATGGAGGGACCACCCACAGCAATGCATCGGGGCTCCGTATGGACTT
CGATATCCTCAAGTAG
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