mRNA_H-elongata_contig16301.4000.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig16301.4000.1
Unique NamemRNA_H-elongata_contig16301.4000.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig16301.4000.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig16301contigH-elongata_contig16301:750..1423 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size491
Cds size306
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig16301.4000.1prot_H-elongata_contig16301.4000.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig16301 935..1423 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929954.513604-UTR-H-elongata_contig16301:749..9341622929954.513604-UTR-H-elongata_contig16301:749..934Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig16301 750..934 -
1691679222.0302281-UTR-H-elongata_contig16301:749..9341691679222.0302281-UTR-H-elongata_contig16301:749..934Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig16301 750..934 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929954.5515852-CDS-H-elongata_contig16301:934..10421622929954.5515852-CDS-H-elongata_contig16301:934..1042Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16301 935..1042 -
1691679222.0393043-CDS-H-elongata_contig16301:934..10421691679222.0393043-CDS-H-elongata_contig16301:934..1042Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16301 935..1042 -
1622929954.566546-CDS-H-elongata_contig16301:1225..14231622929954.566546-CDS-H-elongata_contig16301:1225..1423Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16301 1226..1423 -
1691679222.0520425-CDS-H-elongata_contig16301:1225..14231691679222.0520425-CDS-H-elongata_contig16301:1225..1423Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16301 1226..1423 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig16301.4000.1

>prot_H-elongata_contig16301.4000.1 ID=prot_H-elongata_contig16301.4000.1|Name=mRNA_H-elongata_contig16301.4000.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=102bp
GSPSRAPFLSSGFLDVTSSWCCSFNLPLPLELTKTVRYVSLVVIIAPSTS
SISPLTLQVDQGQTSYGRGGGLLNEKGEFFIQATNMDTSYGLMPFCKDKE
R*
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mRNA from alignment at H-elongata_contig16301:750..1423-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig16301.4000.1 ID=mRNA_H-elongata_contig16301.4000.1|Name=mRNA_H-elongata_contig16301.4000.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=674bp|location=Sequence derived from alignment at H-elongata_contig16301:750..1423- (Himanthalia elongata Himel1 dioecious)
GGTTCTCCCTCGCGGGCGCCATTCCTTTCTTCCGGTTTCCTGGACGTGAC
GTCATCATGGTGCTGCAGCTTTAATTTGCCGCTGCCGTTGGAACTAACGA
AAACGGTTCGGTACGTGAGTTTAGTTGTAATAATTGCACCGTCAACGTCA
TCGATTTCACCGTTAACGCTGCAAGTCGACCAAGGTCAAACGAGCTACGT
CCCATCAAGCGTCGGTAACTCCTCGTGGGCCCTTACCCAAGCTTCACGTC
CTTGGGTTCGGTTTCACCCTGGCAGAGAGGCAGAAACGTACGAGGAAGCA
GCACCAACATTGTACGAGGTCACCGAGGTCAACCTGTTCAGACCTTTTGT
TTCCTTTCGGGAGTGACGAGGTTATCGTTAGGGTAGGGGTGGCGGGCTGC
TGAACGAGAAGGGTGAGTTCTTTATTCAGGCCACCAACATGGATACCTCC
TACGGCTTGATGCCCTTTTGTAAGGACAAGGAGCGCTGAAAGCGAGGACA
GGCAACAAAAAACACCAAGTCGATCAGAGTATTACATGTGTAGAAAAGGG
AGGCTTGGCTCAATAATGTTTGACATCGGAACTTTGTTATTCTTTGTTGA
GTTTCGCACACTTTTTTTGTCTACGTGTGTGGTCATGACGTAATTACATA
CACTTAGTATATAGCAGAGTATGG
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Coding sequence (CDS) from alignment at H-elongata_contig16301:750..1423-

>mRNA_H-elongata_contig16301.4000.1 ID=mRNA_H-elongata_contig16301.4000.1|Name=mRNA_H-elongata_contig16301.4000.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=612bp|location=Sequence derived from alignment at H-elongata_contig16301:750..1423- (Himanthalia elongata Himel1 dioecious)
GGTTCTCCCTCGCGGGCGCCATTCCTTTCTTCCGGTTTCCTGGACGTGAC
GTCATCATGGTGCTGCAGCTTTAATTTGCCGCTGCCGTTGGAACTAACGA
AAACGGTTCGGTACGTGAGTTTAGTTGTAATAATTGCACCGTCAACGTCA
TCGATTTCACCGTTAACGCTGCAAGTCGACCAAGGTCAAACGAGCTACGG
TTCTCCCTCGCGGGCGCCATTCCTTTCTTCCGGTTTCCTGGACGTGACGT
CATCATGGTGCTGCAGCTTTAATTTGCCGCTGCCGTTGGAACTAACGAAA
ACGGTTCGGTACGTGAGTTTAGTTGTAATAATTGCACCGTCAACGTCATC
GATTTCACCGTTAACGCTGCAAGTCGACCAAGGTCAAACGAGCTACGGTA
GGGGTGGCGGGCTGCTGAACGAGAAGGGTGAGTTCTTTATTCAGGCCACC
AACATGGATACCTCCTACGGCTTGATGCCCTTTTGTAAGGACAAGGAGCG
CTGAGGTAGGGGTGGCGGGCTGCTGAACGAGAAGGGTGAGTTCTTTATTC
AGGCCACCAACATGGATACCTCCTACGGCTTGATGCCCTTTTGTAAGGAC
AAGGAGCGCTGA
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