mRNA_H-elongata_contig16300.3999.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig16300.3999.1 vs. uniprot
Match: D7FRR0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRR0_ECTSI) HSP 1 Score: 620 bits (1598), Expect = 2.770e-209 Identity = 376/734 (51.23%), Postives = 447/734 (60.90%), Query Frame = 1
Query: 112 LAVGIRAGDITQPPHGQERGDKMSARASRFG-VSENARVGKGNDVSPGE--RKRGG-ESRRLPPRIRRFVFQKELALHVSMSILSIAVPFSLSGSPWLVSIPLSLWCFYTVMFVAGAKRAGIVSRRFDRFKRSFVTAMEEFLPRRLLPIFSLSFLSVVVAVALTAAKLGGSPLCVASCHSCLSSWANARPLSTD------------------------------------------------------------DPPDP---------NQACGFANGKELLAYYTVSQSAILVYLAVMAGLLTCLAWKVSEEELAGREAAEGRLMAQNPRAFELREQMILEHGRPGSSVRPELTRAWLIFGVVAASIFVLVGWRKWSELPMNAMTVVMIAADVTVTVTSVLMLHVGFHGRLIALYEGNLHRVHFLSKVLREGISGMEEPWVHVAEAWWSLRCFVLGEDLTLDYDVGGVGISATVAIIVVSFVVAIVQVVREGSDAILSPPGSYCAYATVYMTVSLVRILGLAAKTCLEQQLHAGCIEDYLKNLARVSSKASVSSGVS---GRYGPSPSTLPQ------------------------------------DQSSGLFSSQSSVGGEAVYSMSGHLNSAGETQKHPDSFSAEKEIGLVEGRRDKEAVGGVSN-------PGQESIKNMVVKIKTSDPCPCVLGIPIKPASFAKAKLCAYVFFAVISAKLVWDMIHGL 1956
LA G+ AG T P RA G V + DVS G RKRG + RR RI +FVFQKELALH SM ILSIA+PFSLSGSPWL +IP+ +WCFY MFV GAKRA V FDRFKRSFV AMEEFLP RL+P+ SLSFLSVV+AV LTAA+LGG PLC++SC +CL SW +A P ++ D P +ACG+ANGKELLAYYTVSQSAIL+YLAVM GLLTCLAWKVSEEELA R+AAE RL QNPRAFELRE+MILEHGRPGSSVRPE T WL+FG+VAA F L+GWRKW +LP+ A+TVV+I A+VT T+ SVLMLHVGFHGRLIALY+GNL RV FLSK+LREG S EEPWVH AEAWW LR FVL EDL+LDYDVGG+G+SAT I++ SFVVAI Q+VREG DA+L+PPGSYCAYA+VY+TV L+RI GLA KT LEQQLH G I+DY+ NL +++K + SS R PSPS + S +S + AV S ++ G S A ++ G G R +GG N P QE+++ M+V I T DP PCVLGIP+KPA FA +K+ + FAVIS KL++D+I G+
Sbjct: 73 LASGMEAGISTGSP-----------RAGGIGSVGAGVTSPRDRDVSGGGGGRKRGKRDRRRFFLRIHKFVFQKELALHFSMCILSIAIPFSLSGSPWLAAIPVCVWCFYNAMFVMGAKRASTVLPGFDRFKRSFVAAMEEFLPPRLVPVLSLSFLSVVIAVTLTAARLGGPPLCISSCRTCLGSWKHAHPATSPQGRGAAASTSGEASRSRSKFSPNIVGAFEGAKRGRDSAAAGDHRQAGGSGGGGENFWVEADRASPARGSQRAKSGEACGYANGKELLAYYTVSQSAILIYLAVMTGLLTCLAWKVSEEELAQRQAAESRLKGQNPRAFELRERMILEHGRPGSSVRPETTCPWLMFGLVAACTFTLIGWRKWGDLPVTAVTVVVIGANVTTTLASVLMLHVGFHGRLIALYQGNLQRVQFLSKLLREGTSKAEEPWVHAAEAWWFLRSFVLREDLSLDYDVGGLGVSATFFIVLASFVVAIAQIVREGLDAMLNPPGSYCAYASVYLTVCLIRIFGLATKTYLEQQLHVGIIQDYIDNLVAIAAKTASSSASELKKERGQPSPSLXXXXXXXXXXXXXXXXXXXXAAERGAADNAAHPNAANSVSEPSPANASLLAAARAAVTGTSALGDAGGRRDTRDRSPKAAEDGGSGGGAR---GIGGAGNEGEALLHPAQEAMRRMIVHIDTLDPYPCVLGIPVKPALFATSKVYVFGCFAVISVKLMYDVISGI 792
BLAST of mRNA_H-elongata_contig16300.3999.1 vs. uniprot
Match: A0A482RT25_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RT25_9ARCH) HSP 1 Score: 182 bits (462), Expect = 9.020e-49 Identity = 97/225 (43.11%), Postives = 143/225 (63.56%), Query Frame = 1
Query: 277 RRLPPRIRRFVFQKELALHVSMSILSIAVPFSLSGSPWLVSIPLSLWCFYTVMFVAGAKRAGIVSRRFDRFKRSFVTAMEEFLPRRLLPIFSLSFLSVVVAVALTAAKLGGSPLCVASCHSCLSSWANARPLSTDDPPDPNQ---ACGFANGKELLAYYTVSQSAILVYLAVMAGLLTCLAWKVSEEELAGREAAEGRLMAQNPRAFELREQMILEHGRPGSSVR 942
R+ R+ +F FQ +L LH + +LS+ PF SG+ +PLS+W FY V+F+ +A +V F + K SF + +EEF +LLP+ S+SFL V +++ +T LGG PLC C +CLSSW N+ LS+ D N CG+ANGKELLAYYT+SQ++ L++ V+ ++ C+AW+V+EEE+ RE AE L ++P A+ELR ++I HG P S +R
Sbjct: 27 RKFSLRVHKFSFQWDLVLHFLICLLSLC-PFFFSGNRLFALLPLSVWVFYHVLFILNPNQANLVIPGFGKLKHSFKSTIEEFFSPKLLPVLSISFLLVALSLGVTGHTLGGPPLCYHPCGTCLSSWTNSISLSSPDSSSINSYRHGCGYANGKELLAYYTMSQTSFLLFCVVVLSMVVCMAWRVAEEEIEEREQAEAWLKRESPLAYELRGEVIGTHGPPASPIR 250
BLAST of mRNA_H-elongata_contig16300.3999.1 vs. uniprot
Match: A0A7S3M970_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M970_9STRA) HSP 1 Score: 171 bits (433), Expect = 2.670e-44 Identity = 92/214 (42.99%), Postives = 132/214 (61.68%), Query Frame = 1
Query: 880 RAFELREQMILEHGRPGSSVRPELTRAWLIFGVVAASIFVLVGWRKWSELPMNAMTVVMIAADVTVTVTSVLMLHVGFHGRLIALYEGNLHRVHFLSKVLREGISGMEEPWVHVAEAWWSLRCFVLGEDLTLDYDVGGVGISATVAIIVVSFVVAIVQVVREGSDAILSPPGSYCAYATVYMTVSLVRILGLAAKTCLEQQLHAGCIEDYLKNL 1521
+AFE+R+ +I G PGSSVRPE + W+ FGV AA F L+GW W LP + ++I ++ + S L+LH+ F GRL+ALY+ N HRV L+++L G + EE ++WW+ R FVL +DL+LDYD+GG+ +SAT I ++ F I Q+VREG +L PPGSY AYA +Y+T L+++ LA T EQ H ++ L
Sbjct: 3 KAFEMRQTLIERFGSPGSSVRPEGSATWIFFGVTAALTFTLLGWHNWYVLPPSNTATLLIILNLLTILMSTLILHLSFFGRLLALYKRNYHRVECLTQLL--GKTDKEE-----LDSWWNCRNFVLNDDLSLDYDIGGLAVSATFLIALLLFGALITQLVREGLQGMLEPPGSYLAYACLYITCCLIKLFTLATNTYEEQHRHIAVLQGISNGL 209
BLAST of mRNA_H-elongata_contig16300.3999.1 vs. uniprot
Match: A0A7S3M8A9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M8A9_9STRA) HSP 1 Score: 159 bits (401), Expect = 8.650e-40 Identity = 91/238 (38.24%), Postives = 136/238 (57.14%), Query Frame = 1
Query: 292 RIRRFVFQKELALHVSMSILSIAVPFSLSGSPWLVSIPLSLWCFYTVMFVAGAKRAGIVSRRFDRFKRSFVTAMEEFLPRRLLPIFSLSFLSVVVAVALTAAKLGGSPLCVASCHSCLSSWANARPLST--------------------DDPPDP------------NQACGFANGKELLAYYTVSQSAILVYLAVMAGLLTCLAWKVSEEELAGREAAEGRLMAQNPRAFELREQMI 909
R+ +F FQ ELA+H+ + I+S+A PF +G +P+S+W FY V+F+ G + + V RF R K SF +EEF +LLP+ S+SFL VV+++A+T +LGG PLC C CL++W ++ PLS D P DP CG+ANGKE+L YYT+ Q++ L+++ V+ +L CLAW+V++EE R AE L +AFE+R+ +I
Sbjct: 60 RVHKFAFQWELAIHLVVCIISLA-PFFFTGRRVFSLLPISVWLFYNVLFLIGPQHSNKVIPRFGRIKNSFKNNIEEFFSPKLLPVLSISFLCVVLSLAVTGHRLGGPPLCYHPCGVCLATWKHSIPLSAAAAALVARVDPLMQPLVTPIDSPYDPLVGRMDPLVDAYRVGCGYANGKEMLGYYTMGQTSFLLFIVVVVAILVCLAWRVADEEKTERRTAEEWLKRDALKAFEMRQTLI 296
BLAST of mRNA_H-elongata_contig16300.3999.1 vs. uniprot
Match: A0A482S024_9ARCH (Uncharacterized protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S024_9ARCH) HSP 1 Score: 149 bits (376), Expect = 4.530e-37 Identity = 78/215 (36.28%), Postives = 119/215 (55.35%), Query Frame = 1
Query: 961 WLIFGVVAASIFVLVGWRKWSELPMNAMTVVMIAADVTVTVTSVLMLHVGFHGRLIALYEGNLHRVHFLSKVLREGISGMEEPWVHVAEAWWSLRCFVLGEDLTLDYDVGGVGISATVAIIVVSFVVAIVQVVREGSDAILSPPGSYCAYATVYMTVSLVRILGLAAKTCLEQQLHAGCIEDYLKNLARVSSKAS---VSSGVSGRYGPSPSTLP 1596
W+ FG+ AA F L+GW W L + ++I ++ +T++L+LH+GF GRLIALY N HRV ++++L + + H + WW+ R FVL +DL+LDYD+GG+ +S T + V+ +V + +G +L PPGSYCAY+ +Y+T L+RI LA T EQQ H ++ L S+ + G G +P LP
Sbjct: 2 WVFFGITAAITFTLLGWHNWHILSPSPSATLLIVLNLLTIITTILILHLGFFGRLIALYTRNFHRVAHITRLLHSQHAHAQGSTTHELDVWWNARSFVLNDDLSLDYDIGGLAVSLTFVLNVIVGIVLATVLYDQGYAGMLEPPGSYCAYSCMYITSCLIRIFQLATSTYTEQQTHLSLLQQMSVRLMMAGSEVGGYGAGNLNGGGLGSTPPPLP 216
BLAST of mRNA_H-elongata_contig16300.3999.1 vs. uniprot
Match: A0A7S2B501_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2B501_9STRA) HSP 1 Score: 124 bits (311), Expect = 6.440e-29 Identity = 58/91 (63.74%), Postives = 74/91 (81.32%), Query Frame = 1
Query: 1228 AWWSLRCFVLGEDLTLDYDVGGVGISATVAIIVVSFVVAIVQVVREGSDAILSPPGSYCAYATVYMTVSLVRILGLAAKTCLEQQLHAGCI 1500
AWWS+R FVL EDL+LDYD+GG+G+SAT I++VSF+VA+VQ+VREG A+LSPPGSYCAYA+VY+TV L+RI LA T +QQ H +
Sbjct: 17 AWWSVRSFVLAEDLSLDYDIGGLGVSATFVIVLVSFIVAVVQIVREGLHAMLSPPGSYCAYASVYLTVCLIRIFSLATLTFKQQQSHVAML 107
BLAST of mRNA_H-elongata_contig16300.3999.1 vs. uniprot
Match: A0A7S2B4U9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2B4U9_9STRA) HSP 1 Score: 55.1 bits (131), Expect = 1.660e-5 Identity = 26/55 (47.27%), Postives = 37/55 (67.27%), Query Frame = 1
Query: 1015 KWSELPMNAMTVVMIAADVTVTVTSVLMLHVGFHGRLIALYEGNLHRVHFLSKVL 1179
+W ELP + ++I +V S+++LHVGF+GRL ALY+ NL RV FLS+ L
Sbjct: 4 EWQELPFTVASSIIICVNVATIFISIIILHVGFYGRLNALYQRNLSRVQFLSRCL 58 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig16300.3999.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig16300.3999.1 >prot_H-elongata_contig16300.3999.1 ID=prot_H-elongata_contig16300.3999.1|Name=mRNA_H-elongata_contig16300.3999.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=594bp MSARASRFGVSENARVGKGNDVSPGERKRGGESRRLPPRIRRFVFQKELAback to top mRNA from alignment at H-elongata_contig16300:1763..6537+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig16300.3999.1 ID=mRNA_H-elongata_contig16300.3999.1|Name=mRNA_H-elongata_contig16300.3999.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=4775bp|location=Sequence derived from alignment at H-elongata_contig16300:1763..6537+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig16300:1763..6537+ >mRNA_H-elongata_contig16300.3999.1 ID=mRNA_H-elongata_contig16300.3999.1|Name=mRNA_H-elongata_contig16300.3999.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=3564bp|location=Sequence derived from alignment at H-elongata_contig16300:1763..6537+ (Himanthalia elongata Himel1 dioecious)back to top |