prot_H-elongata_contig16295.3995.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig16295.3995.1
Unique Nameprot_H-elongata_contig16295.3995.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length96
Homology
BLAST of mRNA_H-elongata_contig16295.3995.1 vs. uniprot
Match: D7FV24_ECTSI (Golgi apparatus membrane protein TVP23 homolog n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV24_ECTSI)

HSP 1 Score: 162 bits (411), Expect = 7.590e-49
Identity = 79/90 (87.78%), Postives = 85/90 (94.44%), Query Frame = 0
Query:    1 VGLRWWSNVKEDGTTEWVFESLDNMSEISSVDYKLFWIGLYGTPVLWLGLFITGIMLLKFQWLVIVVIALALNGANIYGYTKCNADAKNK 90
            VGLRWWSNVKEDGTTEWVFESL++MSEI+S DYKLFWIGLYGTPVLW+ L +TGIMLLKFQWLVIVVIAL L+GANIYGYTKCNADAK K
Sbjct:   61 VGLRWWSNVKEDGTTEWVFESLEDMSEINSADYKLFWIGLYGTPVLWVCLLVTGIMLLKFQWLVIVVIALLLSGANIYGYTKCNADAKVK 150          
BLAST of mRNA_H-elongata_contig16295.3995.1 vs. uniprot
Match: A0A6H5KM82_9PHAE (Golgi apparatus membrane protein TVP23 homolog n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KM82_9PHAE)

HSP 1 Score: 157 bits (396), Expect = 8.380e-45
Identity = 76/90 (84.44%), Postives = 83/90 (92.22%), Query Frame = 0
Query:    1 VGLRWWSNVKEDGTTEWVFESLDNMSEISSVDYKLFWIGLYGTPVLWLGLFITGIMLLKFQWLVIVVIALALNGANIYGYTKCNADAKNK 90
            VGLRWWSNV  DGTTEWVFESL++MSEI+S DYKLFWIGLYGTPVLW+ L +TGIMLLKFQWLVIVVIAL L+GANIYGYTKCNAD+K K
Sbjct:  218 VGLRWWSNVTADGTTEWVFESLEDMSEINSADYKLFWIGLYGTPVLWVCLLVTGIMLLKFQWLVIVVIALLLSGANIYGYTKCNADSKVK 307          
BLAST of mRNA_H-elongata_contig16295.3995.1 vs. uniprot
Match: A0A835Z0U0_9STRA (Golgi apparatus membrane protein TVP23 homolog n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0U0_9STRA)

HSP 1 Score: 133 bits (334), Expect = 8.820e-37
Identity = 62/90 (68.89%), Postives = 72/90 (80.00%), Query Frame = 0
Query:    1 VGLRWWSNVKEDGTTEWVFESLDNMSEISSVDYKLFWIGLYGTPVLWLGLFITGIMLLKFQWLVIVVIALALNGANIYGYTKCNADAKNK 90
            VGLRWWSNVKEDGTT WVFESL+NMSEI   D KLFWIGLY  P +W+ LFI G++    QWL+IVV+A+ L+ ANI GYTKC+ DAKNK
Sbjct:  111 VGLRWWSNVKEDGTTSWVFESLENMSEIQPADSKLFWIGLYAAPAVWVALFIIGLLKFNLQWLIIVVVAILLSTANIVGYTKCSNDAKNK 200          
BLAST of mRNA_H-elongata_contig16295.3995.1 vs. uniprot
Match: A0A7S2V0N0_9STRA (Golgi apparatus membrane protein TVP23 homolog n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V0N0_9STRA)

HSP 1 Score: 131 bits (329), Expect = 2.100e-36
Identity = 59/90 (65.56%), Postives = 75/90 (83.33%), Query Frame = 0
Query:    1 VGLRWWSNVKEDGTTEWVFESLDNMSEISSVDYKLFWIGLYGTPVLWLGLFITGIMLLKFQWLVIVVIALALNGANIYGYTKCNADAKNK 90
            VGLRWW+NVKEDGTTEW FESL++M+E+SS D +LFW+G+YG P+ WL +FI  ++ L FQWL+IVV+AL LNGANI GY KC+ DA+ K
Sbjct:   70 VGLRWWNNVKEDGTTEWRFESLEDMTEVSSADSRLFWLGMYGAPLAWLVVFIVDLLKLNFQWLIIVVVALTLNGANIVGYIKCSNDARQK 159          
BLAST of mRNA_H-elongata_contig16295.3995.1 vs. uniprot
Match: A0A6V1M0B7_HETAK (Golgi apparatus membrane protein TVP23 homolog n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1M0B7_HETAK)

HSP 1 Score: 124 bits (312), Expect = 1.620e-33
Identity = 55/94 (58.51%), Postives = 71/94 (75.53%), Query Frame = 0
Query:    1 VGLRWWSNVKEDGTTEWVFESLDNMSEISSVDYKLFWIGLYGTPVLWLGLFITGIMLLKFQWLVIVVIALALNGANIYGYTKCNADAKNKASGI 94
            VGLRWWS+V EDG T+WVFESL+++ E+ + D +LFW+GLY TP  W  LF+ G++    QWL++VV+ALAL+GANI GYTKC  DAK K  G 
Sbjct:  104 VGLRWWSHVSEDGKTDWVFESLEDLGEVHAGDARLFWLGLYATPAAWAALFVIGLLKFNLQWLIVVVVALALSGANIIGYTKCRKDAKQKLQGF 197          
BLAST of mRNA_H-elongata_contig16295.3995.1 vs. uniprot
Match: A0A485KG22_9STRA (Golgi apparatus membrane protein TVP23 homolog n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KG22_9STRA)

HSP 1 Score: 117 bits (292), Expect = 2.020e-30
Identity = 50/90 (55.56%), Postives = 69/90 (76.67%), Query Frame = 0
Query:    1 VGLRWWSNVKEDGTTEWVFESLDNMSEISSVDYKLFWIGLYGTPVLWLGLFITGIMLLKFQWLVIVVIALALNGANIYGYTKCNADAKNK 90
            VGLRWW+ + EDG+ EWVFESL++MSEI  +D K+FW GLYG PV+W+   +  ++ L  +W +I ++AL L+GAN+ GYTKC+ DAKNK
Sbjct:  114 VGLRWWNRINEDGSNEWVFESLEDMSEIDPLDAKIFWTGLYGAPVVWVLFLLIAVLKLNVEWALIAIVALTLSGANVVGYTKCSKDAKNK 203          
BLAST of mRNA_H-elongata_contig16295.3995.1 vs. uniprot
Match: A0A7S2C953_9STRA (Golgi apparatus membrane protein TVP23 homolog n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C953_9STRA)

HSP 1 Score: 116 bits (290), Expect = 5.050e-30
Identity = 53/90 (58.89%), Postives = 72/90 (80.00%), Query Frame = 0
Query:    1 VGLRWWSNVKEDGTTEWVFESLDNMSEISSVDYKLFWIGLYGTPVLWLGLFITGIMLLKFQWLVIVVIALALNGANIYGYTKCNADAKNK 90
            VGLRWW+ VKEDGT EWVFESL+NMSE+++ D ++FW+GLY    +W GL +   + L+FQWL++V IAL+++ ANI GYTKC++DAK K
Sbjct:  126 VGLRWWNYVKEDGTNEWVFESLENMSEVNANDSRVFWMGLYVPVAIWTGLLVIDTLKLQFQWLIVVFIALSMHVANIIGYTKCSSDAKAK 215          
BLAST of mRNA_H-elongata_contig16295.3995.1 vs. uniprot
Match: A0A662XBB3_9STRA (Golgi apparatus membrane protein TVP23 homolog n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XBB3_9STRA)

HSP 1 Score: 114 bits (284), Expect = 1.410e-29
Identity = 50/90 (55.56%), Postives = 69/90 (76.67%), Query Frame = 0
Query:    1 VGLRWWSNVKEDGTTEWVFESLDNMSEISSVDYKLFWIGLYGTPVLWLGLFITGIMLLKFQWLVIVVIALALNGANIYGYTKCNADAKNK 90
            VGLRWW+ + EDGT+EWVFES ++M+EI  +D ++FW GLYG+P LW+ L I  ++    QW +IV++A+AL+GANI GYT+C  DAK K
Sbjct:   80 VGLRWWNRINEDGTSEWVFESHEDMTEIDPLDSRVFWTGLYGSPALWMLLLIVAVLKFNVQWALIVLVAVALSGANIIGYTRCKKDAKQK 169          
BLAST of mRNA_H-elongata_contig16295.3995.1 vs. uniprot
Match: A0A7S1CQ60_9STRA (Golgi apparatus membrane protein TVP23 homolog n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CQ60_9STRA)

HSP 1 Score: 112 bits (280), Expect = 5.120e-29
Identity = 48/94 (51.06%), Postives = 70/94 (74.47%), Query Frame = 0
Query:    1 VGLRWWSNVKEDGTTEWVFESLDNMSEISSVDYKLFWIGLYGTPVLWLGLFITGIMLLKFQWLVIVVIALALNGANIYGYTKCNADAKNKASGI 94
            VGLRWW+++KEDGT EWVFES     E+ ++D+++FW G++G   +W  L +  I+   FQW+++V++ALAL+GANIYGY KCN DAK + +G 
Sbjct:   97 VGLRWWNHIKEDGTNEWVFESHKGTREVDALDWRIFWGGIFGGFAVWAFLLVIAIIKFNFQWMLLVIVALALSGANIYGYLKCNTDAKKQVTGF 190          
BLAST of mRNA_H-elongata_contig16295.3995.1 vs. uniprot
Match: A0A5D6XTW7_9STRA (Golgi apparatus membrane protein TVP23 homolog n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XTW7_9STRA)

HSP 1 Score: 112 bits (280), Expect = 6.700e-29
Identity = 49/90 (54.44%), Postives = 67/90 (74.44%), Query Frame = 0
Query:    1 VGLRWWSNVKEDGTTEWVFESLDNMSEISSVDYKLFWIGLYGTPVLWLGLFITGIMLLKFQWLVIVVIALALNGANIYGYTKCNADAKNK 90
            VGLRWW+ V +DG++EWVFES ++M+E+  +D ++FW+GLYG P LW  L +  ++ L  QW +IV +AL L+GANI GYTKC  DAK K
Sbjct:  112 VGLRWWNRVNDDGSSEWVFESHEDMTEVDPLDAQVFWLGLYGAPALWALLLVVAVLKLNVQWALIVAVALVLSGANIVGYTKCKTDAKQK 201          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig16295.3995.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FV24_ECTSI7.590e-4987.78Golgi apparatus membrane protein TVP23 homolog n=1... [more]
A0A6H5KM82_9PHAE8.380e-4584.44Golgi apparatus membrane protein TVP23 homolog n=1... [more]
A0A835Z0U0_9STRA8.820e-3768.89Golgi apparatus membrane protein TVP23 homolog n=1... [more]
A0A7S2V0N0_9STRA2.100e-3665.56Golgi apparatus membrane protein TVP23 homolog n=1... [more]
A0A6V1M0B7_HETAK1.620e-3358.51Golgi apparatus membrane protein TVP23 homolog n=1... [more]
A0A485KG22_9STRA2.020e-3055.56Golgi apparatus membrane protein TVP23 homolog n=1... [more]
A0A7S2C953_9STRA5.050e-3058.89Golgi apparatus membrane protein TVP23 homolog n=1... [more]
A0A662XBB3_9STRA1.410e-2955.56Golgi apparatus membrane protein TVP23 homolog n=1... [more]
A0A7S1CQ60_9STRA5.120e-2951.06Golgi apparatus membrane protein TVP23 homolog n=1... [more]
A0A5D6XTW7_9STRA6.700e-2954.44Golgi apparatus membrane protein TVP23 homolog n=1... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008564Golgi apparatus membrane protein TVP23-likePFAMPF05832DUF846coord: 1..83
e-value: 1.9E-28
score: 99.2
IPR008564Golgi apparatus membrane protein TVP23-likePANTHERPTHR13019UNCHARACTERIZEDcoord: 1..94
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 62..80
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 35..56
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..34
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 81..96
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 57..61
NoneNo IPR availableTMHMMTMhelixcoord: 35..57
NoneNo IPR availableTMHMMTMhelixcoord: 61..80

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig16295contigH-elongata_contig16295:976..1694 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig16295.3995.1mRNA_H-elongata_contig16295.3995.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig16295 976..1694 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig16295.3995.1 ID=prot_H-elongata_contig16295.3995.1|Name=mRNA_H-elongata_contig16295.3995.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=96bp
VGLRWWSNVKEDGTTEWVFESLDNMSEISSVDYKLFWIGLYGTPVLWLGL
FITGIMLLKFQWLVIVVIALALNGANIYGYTKCNADAKNKASGICA
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR008564TVP23-like