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Homology
BLAST of mRNA_H-elongata_contig16292.3994.1 vs. uniprot
Match: D8LNN1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNN1_ECTSI) HSP 1 Score: 125 bits (315), Expect = 6.380e-28 Identity = 67/152 (44.08%), Postives = 96/152 (63.16%), Query Frame = 3
Query: 6 SHHTMSRVQRVTTASMILSFLGLSVLATAAVMPFWDTVSVSGTLFWSINLDEATHVWVMVSIFFMELLAGATMAITFALLVIFRAPELYQVWQLNRRIKFYFILTAIAVLVDLSIGVGGIVYVLHERFKPPLIAATWTARHVHIALDTLVLY 461
SH T++RV+ ++ S++ L +S+ A PFW T VSGT F N D+ + W+ VS FF+E L G M + A L++FR E+ + W+++ RI++YF LT I V+L++GV G +YV+ R K LI TWT RH+HIALDT VLY
Sbjct: 46 SHRTLARVKSFSSPSLVFLSLAVSIAVAVAAAPFWQTTVVSGTGFAVRNEDQRSGDWLAVSRFFLEFLVGICMFVIVAWLLLFRINEVKECWKVHARIRYYFGLTLIGTTVNLALGVCGTIYVVGGREKSLLIVLTWTFRHIHIALDTFVLY 197
BLAST of mRNA_H-elongata_contig16292.3994.1 vs. uniprot
Match: D8LNP0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNP0_ECTSI) HSP 1 Score: 109 bits (272), Expect = 8.020e-23 Identity = 58/162 (35.80%), Postives = 95/162 (58.64%), Query Frame = 3
Query: 6 SHHTMSRVQRVTTASMILSFLGLSVLATAAVMPFWDTVSVSGTLFWSINLDEATHVWVMVSIFFMELLAGATMAITFALLVIFRAPELYQVWQLNRRIKFYFILTAIAVLVDLSIGVGGIVYVLHERFKPPLIAATWTARHVHIALDTLVLYTALAESSPSE 491
S S V+ ++T ++L FL LS A +PFW +SGT FW + ++ H +VM+S F +E L G M + + L++FR E+ + W ++ +++YF LT + + +L++GV G +YV+ + P L+ +W R V IALDT+VL++ LA S E
Sbjct: 46 SRRPQSHVKSISTHKLVLLFLALSAGLAAIAVPFWGLTVLSGTGFWELGENKRDHEFVMISTFMVEFLVGICMFVIVSWLLLFRMTEIKECWMMHACLRYYFGLTLLGTVGNLTLGVCGTIYVISDMAWPLLMIFSWGFRQVRIALDTIVLHSVLATKSVDE 207
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | signal peptide |
| Exons | 3 |
| Model size | 4297 |
| Cds size | 561 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622929953.0607128-UTR-H-elongata_contig16292:263..280 | 1622929953.0607128-UTR-H-elongata_contig16292:263..280 | Himanthalia elongata Himel1 dioecious | UTR | H-elongata_contig16292 264..280 + |
| 1691679221.3149729-UTR-H-elongata_contig16292:263..280 | 1691679221.3149729-UTR-H-elongata_contig16292:263..280 | Himanthalia elongata Himel1 dioecious | UTR | H-elongata_contig16292 264..280 + |
| 1622929953.1288671-UTR-H-elongata_contig16292:2702..6421 | 1622929953.1288671-UTR-H-elongata_contig16292:2702..6421 | Himanthalia elongata Himel1 dioecious | UTR | H-elongata_contig16292 2703..6421 + |
| 1691679221.353946-UTR-H-elongata_contig16292:2702..6421 | 1691679221.353946-UTR-H-elongata_contig16292:2702..6421 | Himanthalia elongata Himel1 dioecious | UTR | H-elongata_contig16292 2703..6421 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622929953.0767896-CDS-H-elongata_contig16292:280..424 | 1622929953.0767896-CDS-H-elongata_contig16292:280..424 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig16292 281..424 + |
| 1691679221.3267128-CDS-H-elongata_contig16292:280..424 | 1691679221.3267128-CDS-H-elongata_contig16292:280..424 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig16292 281..424 + |
| 1622929953.0932436-CDS-H-elongata_contig16292:2006..2120 | 1622929953.0932436-CDS-H-elongata_contig16292:2006..2120 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig16292 2007..2120 + |
| 1691679221.338919-CDS-H-elongata_contig16292:2006..2120 | 1691679221.338919-CDS-H-elongata_contig16292:2006..2120 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig16292 2007..2120 + |
| 1622929953.113699-CDS-H-elongata_contig16292:2399..2702 | 1622929953.113699-CDS-H-elongata_contig16292:2399..2702 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig16292 2400..2702 + |
| 1691679221.34658-CDS-H-elongata_contig16292:2399..2702 | 1691679221.34658-CDS-H-elongata_contig16292:2399..2702 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig16292 2400..2702 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig16292.3994.1 >prot_H-elongata_contig16292.3994.1 ID=prot_H-elongata_contig16292.3994.1|Name=mRNA_H-elongata_contig16292.3994.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=187bp
MSRVQRVTTASMILSFLGLSVLATAAVMPFWDTVSVSGTLFWSINLDEAT HVWVMVSIFFMELLAGATMAITFALLVIFRAPELYQVWQLNRRIKFYFIL TAIAVLVDLSIGVGGIVYVLHERFKPPLIAATWTARHVHIALDTLVLYTA LAESSPSEAECSQMTSLRSVPKRVRARASTHPENNV* back to topmRNA from alignment at H-elongata_contig16292:264..6421+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-elongata_contig16292.3994.1 ID=mRNA_H-elongata_contig16292.3994.1|Name=mRNA_H-elongata_contig16292.3994.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=6158bp|location=Sequence derived from alignment at H-elongata_contig16292:264..6421+ (Himanthalia elongata Himel1 dioecious) TGTAGAGCCACCACACAATGTCCCGCGTACAGCGGGTGACCACTGCATCC
ATGATTTTATCCTTCCTGGGATTATCGGTGCTGGCGACGGCCGCCGTGAT
GCCCTTCTGGGACACAGTCAGCGTGAGCGGGACGCTGTTCTGGTCGATCA
ACCTCGATGAGGCGAGTCTACAGAGCGTGTTTATTTTAGCTTCCCCGCCG
TTGCAGGAGCGTTCCTGCCTTTTTAGCTCCCCTCGTACTTGATCTTTTTT
TTTCCCGATGCGCCAGTCGCCGCGCGATAATGTGGCCCTGTTCCCCCCAC
GCGAGAACACTCCTTTTGAGCTAAGGGGAACCGTGGAGGTAAGTGGCAGT
GAATACTTTTGTTGTTGGCACTGTTTTGTTGTTGTTGTCACACGCGAGCA
CATTACACAGGTTAAGCTAATTGCCAACCTTGCTTGTCTGCCAGCAATTT
AGTGAGAACAGGGGAAAAAAACTAGCACCCGAAAAGGAGTCAGCCGAGTG
GTCAAAGGAGAATTGACTGACCACATATATATCCCCTACATACTCTATAT
TATTTTCCTATTATTATAAATTAGGCGTGTCAATAAATAAATAAGTACTA
GCAGTAGTAAAGGAGACTGGGGGAAAAGTTAGGCTCATATTGAATTTTGG
TTTGAGCCCCTCTATGAGAGCATGCCTCACGAGTACAGTGTAACGCAGAA
ACCAATCCATTCTAGTTCTTGACTGACGCACCTCTTGCATTCTTTGCTAA
CTAACTAGGCAACTAGTTAAAACAGGGTTTTTGTGAAATGGAAAGTCAAG
TATTGGATGGAGAGTGAGGTTTGCAATTCGCTGTAGCCTAACCAATATTT
CCTTTTTTCTTTCTTTCTTGCACGAACGCCTTGTAGTAATAGCCAGACGC
CAATACCCTACGCCGGGCTATCGAAGCGCCCGGTGGCAAGTTTCCACATA
AAACGTGGATTGAGCCTGGGGGGGCATTTCGGCCGTGAAACCGTTTCAGG
CATTTATTGTATTTTTCTGGAAACTAGAATAATTTGATTTCTACCGATTG
ACGTGGTTAATAAAATCGAAGTAGATATCGAATGTATCCTACAGGTGAGA
GCTTTCGTTTGAGGCACTACGTTTGAGGCACAGGAGTTTTCACTCTCCGT
CCAATACTCCACTCATCATTTCACGAAACCATTGTTTTAGCTAGATAACC
AATTAACTGCTGTGTACATGCGAGTTTGTCGTGATTTGTCTCACCCACTA
AATTCCTCTGTCGGACTCTCTCGGTTGGGTTTCTGCTAGGTTTGTTCTAT
CAAAGGCTTTGGGTAGTATCCCCCCCCCCCCCACACACACACGCCCTCTA
GGGTGCCTGTAAATAAGCGTAACCACTCTTTCGCCCTCGTTGTAACGCGG
AATGTTTTGTCTTTTATCGGTCATTGGTTTTCACCGCAGAGGGCGCGCCC
ACGTGGTGTGTGTGACGCGCTTGGGTGAGGGATGGTATCGGGGTGAACAG
AAAAGCAGAACGCAAAGTCCTGTAGGGGTACACTTAAGACGTACGGTAGT
TGTTGAGGTGCTCGTGTTTTTACACGCCATGACACCCGCAAAGAAAACCT
CGCTTAGATGAACTCCTTCGGTGTTGGGTGTCCTGGAGGACATAGCACAG
GGATATTTCATGCTTATCCAGGTGTCTCCATGGAAAAGAGGTATTTACGA
TATTTGGCTATCCCTCGCTTGCCACTCCCGAAATACGCACCAGGCCACGC
ACGTTTGGGTAATGGTCTCCATTTTCTTTATGGAGTTGCTCGCCGGCGCT
ACGATGGCGATTACCTTCGCTCTACTTGTTATCTTCAGAGCACCCGAGCT
TTACCAGGTGACATATCAAGAGGGATTCGATAGTAGACGGACGGGGTGCA
GCAACCTGTTTGAGATACATTTCCCTGCGCTGTATCCCTAAACCGTCAAA
TATTCCCAGTTCCTCCCGCCACGGCTCAAATATGTTTGCGTGGTCATTCT
TTTCATTTTATACCCGCTTGCGTGAATTTCTGGGGGTTGTCACCCGTACC
CTGAATATATACGCGGTTGCCGCGGTTCAGATCTGGCTCCGTTGCCATTG
CTTCGATTCCGCGGGCCCGCGCACACGCGTCTCCAGGTTTGGCAGTTGAA
CCGCCGGATCAAGTTCTACTTTATCTTGACCGCTATCGCTGTCCTGGTAG
ACCTCTCCATCGGCGTAGGCGGCATAGTGTACGTCCTCCATGAGCGCTTC
AAGCCGCCCCTGATCGCGGCGACGTGGACCGCACGGCACGTCCATATCGC
CCTCGACACCCTCGTCCTTTACACTGCTCTAGCCGAATCGTCACCGTCCG
AAGCCGAGTGCTCTCAGATGACCTCGCTCAGGAGTGTGCCGAAGCGAGTT
CGCGCGCGCGCCAGCACCCACCCGGAAAACAACGTGTAACCCGAACAACC
TTGCGCAACCCAAGGACCCGGGCGGAATGGCGCGCCTCGATGTATTTTTC
TCTCTTGCCGAAGGTGGATTCCGCGAGCGGTAGATTCGTCAGGGAAATAA
CCTGGCTGAAAGTGGGCGGGATGTTTTGTCGGCTAGCTAGCGTGTCTGTT
TGTGGCGTTTTCGTGTTCTTCGGCTCTTTTGCTTTTGTTTTTATTGTATG
GTTGTTTTATCCTTTGTCTGACGGTATTTTTTCTGTAAATGCTGATCCTG
AAGGACGAGGAAGAGAAAAGGGTGGGGGGTGGCAAGAAGAGGGTTTCTGA
GCAAGATCCTTGAGTAACCCACGATAGTCCTGGTAGTGTGGGTATGATTC
GGCGACACTCCCAGTCAAGGGTAGCTGTGCTTGATATGGGCATTCAAAAT
GGAAACGGTAAGTTACGATTGTTCGGCCACTAAAGCTCGACGAGGAATCG
ACGCGAGTTTTCAAACTCGAAATTTGCATTTTCGTGCGTTTTCTCCACGA
GCACGGATCGGGTGCTATAGAATGCGATGAAGTTGCTCACACGCATCGTA
CGTGTGCTTTGATGCGTCCTATGGATTCTATCGCCTGCCCTCAATGTTGG
ATTGCTCAAATTAAGATATATAGATATATGCGGACAAAGCTCATGAATGT
TTCCATCGAGAGTGTCCAGAGAGGTTTCGGGGTGGAAGGCGAGGGCGAAA
TATGTATATGAGGGCATTCTTGGGAAGACTTTTGTGAATGGAGAGGCGCC
ACGACGGCAAAGTAAAAACCCGAGTTATGCTCATTTATTTATTACTTTAC
TTGTATAAAGTATATTTAAACAATATATTCACTTTGCGGGCACTGGTTTG
AGGTCGACCCTCGCTCCCGCCTCTGACTCCGCTTTGAAGCAACAACGAAA
GTTCGTTCGAGCAATCGTACGTCGCCGGTTTGTCGCGGGACGGCGTCATG
TCCACCCGGAAGATAGACAGTCGCTCCGCAGAGTGAAGCGGCAGTGTAGG
TCTTGGTCCTCAATAGAGATGCTGGCTAGCCCTGCTGGTACTCCGTCTGC
TTTGTATGTGTTGGAAGGAACGGACGAAATATAACAGGGTATATATCGGT
TTGTAATGTAATTTGAACTTTAGCTTTGTACTCATGGCGAAAGCGTGAGT
AGTGCCGGCGTGTTTGCGCGCGTATTTGCGTCTCTGTACCATTTAGGAGA
TTGTGTTTTGTTGAGTCGATCGCTGGGGCAATAATAGCCCCTGTGCGTAG
AAGTTTTCTTGGAGTAAGACGTAGCTCGTTACCTGTTTCGACAAACCGCC
ATGTTCGACCTATTTACTTCTGACTTATTTTTCTCCGAGCAAACACCGCC
AGGTGCAGGTGGTATCAAGTGGTTTAGTTTTTTAGAGGCGTGTTGAGGGG
GGCGGGTCCATGTTCCCGGGGGGGAAATACCCGGTACTCCAGTGTGTTAA
CGTCTTAGATGGTAAAGTCGGGTTGGAGGGGGAGGCAATGTTGTGGATGT
TTTGGGTTGTTGACGGAGCAAGAATGACCAGGTGTATGAGTGATGGACGA
CTTAACATGGGATTTTCAATGAAAAGGGAACTTCTCGCTTTAGAGGGAAG
ATAGTAAGGATTTGATATCGTTTTCATCTTGAGAGCGCATCAGTTTTAAC
CCCCCCACTCCACCCTGGGTGCCGAGAACTATAGCCCCCGCGCCTATGAG
GTTCACGGTGGGGCTAGCCGAGGGTAGGTTGGTTCTTGTGGGGTGGAACT
GTAAGATTTCCATCTAGCGGGCATGTGATATTTCATGCCTTGTGTCCTAT
AAGTTCATAGATCTCGGTCGAAGTGCCTTGTATCTCGGCGAACCACACCA
CTCTTTATTGAAGGCCTACCTAAAAATGGATTGATTAAAATCCTTAGAGC
AACCTTTGACTTGTGAGTAGTACTCCAGCAGGAGCTTTCACGGGCAGATT
ATAGTCCGAGCAGTCTATTTGTTTATGTTGTGCGTGCGCTGCTTGTGCGT
TGGCGCGGAGATTAAAGCTTTTTGAGGTACTCGGAGTATAGGTGATGACG
ATAGCGCATGCCGAATATTCATCATTTTCCTGCCCGGTGTGTCTAAAATA
ACTTCTAGCATGTCCGCTTTGGCGTAGCAAACGCAATCTTGCCAGCGAAA
CTCCGACATATCGCTCCGTTCCAGCATTATTGGAATATGCGGTCTACGTC
TGCTAGGATACCACATGCGTTGATACAAGTAACCCCTCCCCCGCACTTCA
GCAGTGCTGTTTCGGAGGTGATTCTTGACCTAAAGGCGACTACCTTGACT
AGTTTTGTTGTATCGGGTCGTTGCCTTTGATTTATATTGCTTTGTCCTTC
GGGGAGTCACGCTGGTCGTGGTGGCTACTCCCTCCGTATTTAAGTGTTTT
TTGCGGTGTAGTTAGTTGTGTCGAAGTACTCCTACTGTAGGTATACTCTT
GTGTTTACTCCTTACGTAGCTAGTCCTCGACTTCTTTTGCTGTGGTTAAG
ACTTGTGTGTGATCATGGGGTCGTTGATATGGATTGCTCTTATGATTAAC
ATGTAGCTTTATCGCGCCCGGCTCTCCTTTTATTATGTCATTGGGTGGAA
AAGTCATTCAATGTATCAATATAATATATTATATCCTGTGTAAGGTACAC
GATACCGATAAGTTCCATCGGGGGATAATATGTGGAAATCACACGAAAAA
GAAAAAATCCGACACCCTTTAAAAAACGCGCCGAGGATTTCCATTGTCCA
TACCCACCTCCAGAGGGTATCTTCCGAATAAAGGGGATATGGGTATCCTG
ACTCCCCCTAGCATCATCTCCTTCCAGGTGATAACCAACAGCCAGCCCGC
TGTCTGTGTTATCTTTCGGGAGGAGGGTAGTATTTATTTCTCGTTCTTAG
CATGCCACCTATTATTTTTATGGTTATCCTCGCTTCCTTAGGAAGCTGTC
TTTGAATCCTGAGTTCGCTCCCCAGGGGGAGTTGTAGCCCAAACTATGGT
CACAAGTTCACCGCTGTGTTCGAAACGGAATCCACGTGTGACTAGTATTG
ACTACTACAACTACATTATATATATATATATACCAGGTATATATTAGCTT
TGCGCTTAGCCTCTTCCCTCTTTTCCGGATGCCTCCCTGTAATACTGTAA
TACGGTAATACGGTAATACAGTATACGGTATCTTCTGTCATCTGCCGGTC
TACTAGCAAATCATGTCCGCCCGCGAGAGCGATGGCCTCGGGACTCCGAA
CATGTTTTCTAACGATTGGTCGACTGTCGGATCATGATACTCGAGGTGTA
GTTCCTATTTTGTTCGAATCACCGTTCGAGTAGTCTAGTAACCAGGTAGT
AAGCAATTAATGGGGAATTCAAGAGTTCGATTCTTATGAGGATGCTTCTT
TTTGTTTCTGTGACAGAAAACGTGAGAATTGGGTGAGCAAAGTTCGACCA
TTGGTTGCATCGCGATGTGTAGAAGTGCTGAACTTGCATGGCGATGATAG
TTCGGATAGATCGTAGGCGTGGGCTAGAGAGTGAGATGAGTTAACCCTGT
AGGGCCACAGGCAAGATGGGTAGCGGAGCAGTAGCTGGGGTTGGTAAGCT
AGTATGTTGGAGGCCCCAACGACAGAAATTTAGAATGAATATAAGAAATC
AACTACAAGCAAGGCGGCAAGGGATCAAATAAAACTCCCCAGACATTTAA
CTCAACAC back to topCoding sequence (CDS) from alignment at H-elongata_contig16292:264..6421+ >mRNA_H-elongata_contig16292.3994.1 ID=mRNA_H-elongata_contig16292.3994.1|Name=mRNA_H-elongata_contig16292.3994.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1122bp|location=Sequence derived from alignment at H-elongata_contig16292:264..6421+ (Himanthalia elongata Himel1 dioecious) ATGTCCCGCGTACAGCGGGTGACCACTGCATCCATGATTTTATCCTTCCT GGGATTATCGGTGCTGGCGACGGCCGCCGTGATGCCCTTCTGGGACACAG TCAGCGTGAGCGGGACGCTGTTCTGGTCGATCAACCTCGATGAGATGTCC CGCGTACAGCGGGTGACCACTGCATCCATGATTTTATCCTTCCTGGGATT ATCGGTGCTGGCGACGGCCGCCGTGATGCCCTTCTGGGACACAGTCAGCG TGAGCGGGACGCTGTTCTGGTCGATCAACCTCGATGAGGCCACGCACGTT TGGGTAATGGTCTCCATTTTCTTTATGGAGTTGCTCGCCGGCGCTACGAT GGCGATTACCTTCGCTCTACTTGTTATCTTCAGAGCACCCGAGCTTTACC AGGCCACGCACGTTTGGGTAATGGTCTCCATTTTCTTTATGGAGTTGCTC GCCGGCGCTACGATGGCGATTACCTTCGCTCTACTTGTTATCTTCAGAGC ACCCGAGCTTTACCAGGTTTGGCAGTTGAACCGCCGGATCAAGTTCTACT TTATCTTGACCGCTATCGCTGTCCTGGTAGACCTCTCCATCGGCGTAGGC GGCATAGTGTACGTCCTCCATGAGCGCTTCAAGCCGCCCCTGATCGCGGC GACGTGGACCGCACGGCACGTCCATATCGCCCTCGACACCCTCGTCCTTT ACACTGCTCTAGCCGAATCGTCACCGTCCGAAGCCGAGTGCTCTCAGATG ACCTCGCTCAGGAGTGTGCCGAAGCGAGTTCGCGCGCGCGCCAGCACCCA CCCGGAAAACAACGTGTAAGTTTGGCAGTTGAACCGCCGGATCAAGTTCT ACTTTATCTTGACCGCTATCGCTGTCCTGGTAGACCTCTCCATCGGCGTA GGCGGCATAGTGTACGTCCTCCATGAGCGCTTCAAGCCGCCCCTGATCGC GGCGACGTGGACCGCACGGCACGTCCATATCGCCCTCGACACCCTCGTCC TTTACACTGCTCTAGCCGAATCGTCACCGTCCGAAGCCGAGTGCTCTCAG ATGACCTCGCTCAGGAGTGTGCCGAAGCGAGTTCGCGCGCGCGCCAGCAC CCACCCGGAAAACAACGTGTAA back to top
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