mRNA_H-elongata_contig1629.3993.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig1629.3993.1 vs. uniprot
Match: A0A6H5L580_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L580_9PHAE) HSP 1 Score: 238 bits (608), Expect = 1.380e-70 Identity = 134/261 (51.34%), Postives = 170/261 (65.13%), Query Frame = 1
Query: 1 VEELVNTPMEPGQNPDDYINQKHLLRLRVEKMGEKVSDRWFKDIIVTGFTDEYKDVRMMMYRDSTLDIEQMTSTMRHMFLDEQSRNRMKVPIAGRSIGMAADTATDPSHIILFNCKEGGNTKKNC----NRPK--TKPAGASKWCSVHSTTTHSDEECLKQGASRPKKEND----FSLCTKCTHCSSESNPKQSMDMNTDTSKDEKPAIDFTGSGNDFDEGFMF-TATAVTSKKPAPSAKVVTLLMDSGASGIFLDNALIP 750
+EEL N PM PG+NPDDY NQKHLLR +++KMGE +SDR FKDI V GF+DEYKDV++M++RD T ++ M STMR++FLDEQSR K IAGR MA T S II +C E G+ ++NC NR K TKPAGA+KWCS H+TT+HSDEEC +QG RP+ D F+ C+ CTHCSS S D S +E +DFT + FD GFMF T + ++ + A S+ V L++DS AS DN LIP
Sbjct: 156 MEELENNPMNPGENPDDYFNQKHLLRTQLDKMGEPISDRRFKDICVQGFSDEYKDVKLMVFRDPTFNVLDMLSTMRNIFLDEQSRKGWKGRIAGRGFAMA----TTASDIICHSCYEPGHIRRNCPKIKNRAKKKTKPAGATKWCSKHNTTSHSDEECYQQGGKRPEDTKDSNKVFTACSNCTHCSSASKK--------DDSNNEVAVVDFTRDEDAFDSGFMFATCSRISGRNFAASSTGVRLVVDSEASETMFDNRLIP 404
BLAST of mRNA_H-elongata_contig1629.3993.1 vs. uniprot
Match: D7G6Q1_ECTSI (CCHC-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6Q1_ECTSI) HSP 1 Score: 221 bits (562), Expect = 3.470e-68 Identity = 130/268 (48.51%), Postives = 168/268 (62.69%), Query Frame = 1
Query: 1 VEELVNTPMEPGQNPDDYINQKHLLRLRVEKMGEKVSDRWFKDIIVTGFTDEYKDVRMMMYRDSTLDIEQMTSTMRHMFLDEQSRNRMKVPIAGRSIGMAADTATDPSHIILFNCKEGGNTKKNC-------NRPKTKPAGASKWCSVHSTTTHSDEECLKQGASRP-----KKENDFSLCTKCTHCSSESNPKQSMDMNTDTSKDEKPAIDFTGSGNDFDEGFMFTATAVTSKKPAPSAKVVTLLMDSGASGIFLDNALIPGLEDEM 768
+E+L NT MEPGQNPDDY N KHLLR +VEKMGEK+SDR+FKD+ VTGFT EYK+V+M+M+RD ++ M +TM HM LDEQSR K IAGR M TA++ F C E G+ ++NC + KTKPAGA+KWC H TT +SDEEC QGA RP + FS C C H SS S+ K+ +S K AID + G++ DEGFM+ AT T + +A+ VTLL++ GA+ D+ LIP L+D +
Sbjct: 1 MEKLDNTSMEPGQNPDDYFNHKHLLRHKVEKMGEKISDRYFKDMCVTGFTHEYKNVKMIMHRDPNFNVNHMQTTMHHMALDEQSRKGSKGGIAGRGFPMVT-TASEQE--TCFGCGEKGHIRRNCLQRRGKGRQRKTKPAGATKWCCFHFTTKNSDEECYGQGAKRPITDQISTDKAFSACAHCAHFSSTSDRKELTTAKEASST--KAAIDSSTDGDESDEGFMY-ATTRTGMEVEANAEGVTLLVEIGATETMRDDRLIPHLKDNV 262
BLAST of mRNA_H-elongata_contig1629.3993.1 vs. uniprot
Match: A0A6H5KJB9_9PHAE (Uncharacterized protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJB9_9PHAE) HSP 1 Score: 233 bits (593), Expect = 4.140e-68 Identity = 132/272 (48.53%), Postives = 176/272 (64.71%), Query Frame = 1
Query: 1 VEELVNTPMEPGQNPDDYINQKHLLRLRVEKMGEKVSDRWFKDIIVTGFTDEYKDVRMMMYRDSTLDIEQMTSTMRHMFLDEQSRNRMKVPIAGRSIGMAADTATDPSHIILFNCKEGGNTKKNC-NRP-------KTKPAGASKWCSVHSTTTHSDEECLKQGASRPKKEND-FSLCTKCTHCSSESNPKQSM----DMNTDTSKDEKPAIDFTGSGNDFDEGFMFTATAV--TSKKPAPSAKVVTLLMDSGASGIFLDNALIPG--LEDE 765
+++L T MEPG+NPDD+ N+KH LR ++EKMGE +SDR FKDI V GF+++YKD++MM++RD + D++QM +TMR++FLDEQ R R K IAGR MA T S I F C E G+ ++NC NR KTKPAGA+KWCSVH+TTTHSDEEC QGA RP++ FS CT C HCS++S + + T+T K EK IDF+ + F GFM+ AT + + +A + L+DSGAS D+ LIP LE+E
Sbjct: 136 LDDLERTVMEPGENPDDFFNKKHRLRSQLEKMGETISDRRFKDICVQGFSEDYKDIKMMVFRDPSFDVQQMQATMRNIFLDEQMRKRTKGQIAGRGFAMATKT----SGPICFECNEPGHVRRNCPNRQREGHRAKKTKPAGATKWCSVHNTTTHSDEECYNQGAKRPERTGKAFSACTHCVHCSTQSRDTHAKPTTTETPTETEKTEKAEIDFSYDEDAFKGGFMYHATCSKGSGRTFTTTATGTSALVDSGASETMFDDRLIPNGRLEEE 403
BLAST of mRNA_H-elongata_contig1629.3993.1 vs. uniprot
Match: A0A6H5KHG5_9PHAE (Uncharacterized protein n=11 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHG5_9PHAE) HSP 1 Score: 235 bits (600), Expect = 3.170e-67 Identity = 134/272 (49.26%), Postives = 176/272 (64.71%), Query Frame = 1
Query: 1 VEELVNTPMEPGQNPDDYINQKHLLRLRVEKMGEKVSDRWFKDIIVTGFTDEYKDVRMMMYRDSTLDIEQMTSTMRHMFLDEQSRNRMKVPIAGRSIGMAADTATDPSHIILFNCKEGGNTKKNC-NRP-------KTKPAGASKWCSVHSTTTHSDEECLKQGASRPKKEND-FSLCTKCTHCSSESNPKQSMDMNTD----TSKDEKPAIDFTGSGNDFDEGFMFTATAV--TSKKPAPSAKVVTLLMDSGASGIFLDNALIPG--LEDE 765
+++L T MEPG+NPDD+ N+KH LR ++EKMGE +SDR FKDI V GF+++YKD++MM++RD + D++QM +TMR++FLDEQ R R K IAGR MA T S I F C E G+ ++NC NR KTKPAGA+KWCSVH+TTTHSDEEC QGA RP++ FS CT C HCS++S Q+ T+ T K EK IDF+ + F GFM+ AT + + +A + L+DSGAS DN LIP LE+E
Sbjct: 136 LDDLERTVMEPGENPDDFFNKKHRLRSQLEKMGETISDRRFKDICVQGFSEDYKDIKMMVFRDPSFDVQQMQATMRNIFLDEQMRKRTKGQIAGRGFAMATKT----SGPICFECNEPGHVRRNCPNRQREGHRAKKTKPAGATKWCSVHNTTTHSDEECYNQGAKRPERTGKAFSACTHCVHCSTQSRDIQAKPTTTEIPKETEKTEKAEIDFSYDEDAFKGGFMYHATCSKGSGRTFTTTATGTSALVDSGASETMFDNRLIPNGRLEEE 403
BLAST of mRNA_H-elongata_contig1629.3993.1 vs. uniprot
Match: A0A6H5L1Z9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1Z9_9PHAE) HSP 1 Score: 234 bits (596), Expect = 5.210e-67 Identity = 133/272 (48.90%), Postives = 176/272 (64.71%), Query Frame = 1
Query: 1 VEELVNTPMEPGQNPDDYINQKHLLRLRVEKMGEKVSDRWFKDIIVTGFTDEYKDVRMMMYRDSTLDIEQMTSTMRHMFLDEQSRNRMKVPIAGRSIGMAADTATDPSHIILFNCKEGGNTKKNC-NRP-------KTKPAGASKWCSVHSTTTHSDEECLKQGASRPKKEND-FSLCTKCTHCSSESNPKQSMDMNTD----TSKDEKPAIDFTGSGNDFDEGFMFTATAV--TSKKPAPSAKVVTLLMDSGASGIFLDNALIPG--LEDE 765
+++L T MEPG+NPDD+ N+KH LR ++EKMGE +SDR FKDI V GF+++YKD++MM++RD + D++QM +TMR++FLDEQ R R K IAGR MA T S I F C E G+ ++NC NR KTKPAGA+KWCSVH+TTTHSDEEC QGA RP++ FS CT C HCS++S Q+ T+ T K E+ IDF+ + F GFM+ AT + + +A + L+DSGAS DN LIP LE+E
Sbjct: 136 LDDLERTVMEPGENPDDFFNKKHRLRSQLEKMGETISDRRFKDICVQGFSEDYKDIKMMVFRDPSFDVQQMQATMRNIFLDEQMRKRTKGQIAGRGFAMATKT----SGPICFECNEPGHVRRNCPNRQREGHRAKKTKPAGATKWCSVHNTTTHSDEECYNQGAKRPERTGKAFSACTHCVHCSTQSRDIQAKPTTTEIPKETEKTEQAEIDFSYDEDAFKGGFMYHATCSKGSGRTFTTTATGTSALVDSGASETMFDNRLIPNGRLEEE 403
BLAST of mRNA_H-elongata_contig1629.3993.1 vs. uniprot
Match: A0A6H5JUN9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUN9_9PHAE) HSP 1 Score: 233 bits (595), Expect = 5.610e-67 Identity = 133/272 (48.90%), Postives = 175/272 (64.34%), Query Frame = 1
Query: 1 VEELVNTPMEPGQNPDDYINQKHLLRLRVEKMGEKVSDRWFKDIIVTGFTDEYKDVRMMMYRDSTLDIEQMTSTMRHMFLDEQSRNRMKVPIAGRSIGMAADTATDPSHIILFNCKEGGNTKKNC-NRP-------KTKPAGASKWCSVHSTTTHSDEECLKQGASRPKKEND-FSLCTKCTHCSSESNPKQSMDMNTD----TSKDEKPAIDFTGSGNDFDEGFMFTATAV--TSKKPAPSAKVVTLLMDSGASGIFLDNALIPG--LEDE 765
+++L T MEPG+NPDD+ N+KH LR ++EKMGE +SDR FKDI V GF+++YKD++MM++RD + D++QM +TMR++FLDEQ R R K IAGR MA T S I F C E G+ ++NC NR KTKPAGA+KWCSVH+TTTHSDEEC QGA RP++ FS CT C HCS++S + T+ T K EK IDF+ + F GFM+ AT + + +A + L+DSGAS DN LIP LE+E
Sbjct: 155 LDDLERTVMEPGENPDDFFNKKHRLRSQLEKMGETISDRRFKDICVQGFSEDYKDIKMMVFRDPSFDVQQMQATMRNIFLDEQMRKRTKGQIAGRGFAMATKT----SGPICFECNEPGHVRRNCPNRQREGHRAKKTKPAGATKWCSVHNTTTHSDEECYNQGAKRPERTGKAFSACTHCVHCSTQSRDIHAKPTTTEIPKETEKTEKAEIDFSYDEDAFKGGFMYHATCSKGSGRTFTTTATGTSALVDSGASETMFDNRLIPNGRLEEE 422
BLAST of mRNA_H-elongata_contig1629.3993.1 vs. uniprot
Match: A0A6H5JTQ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTQ0_9PHAE) HSP 1 Score: 234 bits (597), Expect = 7.990e-67 Identity = 133/272 (48.90%), Postives = 175/272 (64.34%), Query Frame = 1
Query: 1 VEELVNTPMEPGQNPDDYINQKHLLRLRVEKMGEKVSDRWFKDIIVTGFTDEYKDVRMMMYRDSTLDIEQMTSTMRHMFLDEQSRNRMKVPIAGRSIGMAADTATDPSHIILFNCKEGGNTKKNC-NRP-------KTKPAGASKWCSVHSTTTHSDEECLKQGASRPKKEND-FSLCTKCTHCSSESNPKQSMDMNTD----TSKDEKPAIDFTGSGNDFDEGFMFTATAV--TSKKPAPSAKVVTLLMDSGASGIFLDNALIPG--LEDE 765
+++L T MEPG+NPDD+ N+KH LR ++EKMGE +SDR FKDI V GF+++YKD++MM++RD + D++QM +TMR++FLDEQ R R K IAGR MA T S I F C E G+ ++NC NR KTKPAGA+KWCSVH+TTTHSDEEC QGA RP++ FS CT C HCS++S + T+ T K EK IDF+ + F GFM+ AT + + +A + L+DSGAS DN LIP LE+E
Sbjct: 136 LDDLERTVMEPGENPDDFFNKKHRLRSQLEKMGETISDRRFKDICVQGFSEDYKDIKMMVFRDPSFDVQQMQATMRNIFLDEQMRKRTKGQIAGRGFAMATKT----SGPICFECNEPGHVRRNCPNRQREGHRAKKTKPAGATKWCSVHNTTTHSDEECYNQGAKRPERTGKAFSACTHCVHCSTQSRDTHAKPTTTEIPKETEKTEKAEIDFSYDEDAFKGGFMYHATCSKGSGRTFTTTATGTSALVDSGASETMFDNRLIPNGRLEEE 403
BLAST of mRNA_H-elongata_contig1629.3993.1 vs. uniprot
Match: A0A6H5KW66_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW66_9PHAE) HSP 1 Score: 229 bits (585), Expect = 1.750e-66 Identity = 122/224 (54.46%), Postives = 154/224 (68.75%), Query Frame = 1
Query: 1 VEELVNTPMEPGQNPDDYINQKHLLRLRVEKMGEKVSDRWFKDIIVTGFTDEYKDVRMMMYRDSTLDIEQMTSTMRHMFLDEQSRNRMKVPIAGRSIGMAADTATDPSHIILFNCKEGGNTKKNCN------RPKTKPAGASKWCSVHSTTTHSDEECLKQGASRPKKEND----FSLCTKCTHCSSESNPKQSMDMNTDTSKDEKPAIDFTGSGNDFDEGFMF 642
+EEL+NTPMEP QNPDDY NQKHLLR + EKMGE +SD +F D VTGFT+EYKDV+M+MYRD ++++M +TMRHMFLDEQSRN K IAGR M A T+ +P+ F+C E G+ +NC+ + KTKPAGA+KWCSVH TT HSDEEC +QGA+RPKK ++ S C CTHC S SN K + M + + IDF+ G +EGFM+
Sbjct: 116 MEELINTPMEPRQNPDDYFNQKHLLRHKAEKMGETISDCYFNDECVTGFTNEYKDVKMIMYRDPDFNVDKMQTTMRHMFLDEQSRNGPKGSIAGRGFAMTATTSEEPT---CFDCGEKGHIWRNCSEKRGKGKKKTKPAGAAKWCSVHFTTRHSDEECFEQGATRPKKSSNTGKALSACASCTHCFSTSN-KTELAMTKQEASSTQAEIDFSAEGES-EEGFMY 334
BLAST of mRNA_H-elongata_contig1629.3993.1 vs. uniprot
Match: A0A6H5K3T5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3T5_9PHAE) HSP 1 Score: 232 bits (591), Expect = 2.480e-66 Identity = 132/272 (48.53%), Postives = 176/272 (64.71%), Query Frame = 1
Query: 1 VEELVNTPMEPGQNPDDYINQKHLLRLRVEKMGEKVSDRWFKDIIVTGFTDEYKDVRMMMYRDSTLDIEQMTSTMRHMFLDEQSRNRMKVPIAGRSIGMAADTATDPSHIILFNCKEGGNTKKNC-NRP-------KTKPAGASKWCSVHSTTTHSDEECLKQGASRPKKEND-FSLCTKCTHCSSESNPKQSMDMNTD----TSKDEKPAIDFTGSGNDFDEGFMFTATAV--TSKKPAPSAKVVTLLMDSGASGIFLDNALIPG--LEDE 765
+++L T MEPG+NPDD+ N+KH LR ++EKMGE +SDR FKDI V GF+++YKD++MM++RD + D++QM +TMR++FLDEQ R R K IAGR MA T S I F C E G+ ++NC NR KTKPAGA+KWCSVH+TTTHSDEEC QGA RP++ FS CT C HCS++S Q+ T+ T K E+ IDF+ + F GFM+ AT + + +A + L+DSGAS D+ LIP LE+E
Sbjct: 136 LDDLERTVMEPGENPDDFFNKKHRLRSQLEKMGETISDRRFKDICVQGFSEDYKDIKMMVFRDPSFDVQQMQATMRNIFLDEQMRKRTKGQIAGRGFAMATKT----SGPICFECNEPGHVRRNCPNRQREGHRAKKTKPAGATKWCSVHNTTTHSDEECYNQGAKRPERTGKAFSACTHCVHCSTQSRDIQAKPTTTEIPKETEKTEQAEIDFSYDEDAFKGGFMYHATCSKGSGRTFTTTATGTSALVDSGASETMFDDRLIPNGRLEEE 403
BLAST of mRNA_H-elongata_contig1629.3993.1 vs. uniprot
Match: A0A6H5JZ53_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ53_9PHAE) HSP 1 Score: 223 bits (567), Expect = 4.620e-66 Identity = 128/263 (48.67%), Postives = 168/263 (63.88%), Query Frame = 1
Query: 1 VEELVNTPMEPGQNPDDYINQKHLLRLRVEKMGEKVSDRWFKDIIVTGFTDEYKDVRMMMYRDSTLDIEQMTSTMRHMFLDEQSRNRMKVPIAGRSIGMAADTATDPSHIILFNCKEGGNTKKNC----NRPK--TKPAGASKWCSVHSTTTHSDEECLKQ--GASRPKKEND----FSLCTKCTHCSSESNPKQSMDMNTDTSKDEKPAIDFTGSGNDFDEGFMF-TATAVTSKKPAPSAKVVTLLMDSGASGIFLDNALIP 750
+EEL N PM PG+NPDDY NQKH L ++++KMGE +SDR FKDI V GF+DEY+DV++M++RD T ++ M STMR+++LDEQSR K IAGR MA T S II +C E G+ ++NC NR K TKPAGA+KWCS H+TT+HSDEEC +Q G P+ D F+ C+ CTHCSS N S +E +DFT + FD GFMF T + ++ + A S+ V LL+D+GAS DN L+P
Sbjct: 1 MEELENNPMNPGENPDDYFNQKHPLCVQLDKMGEPISDRRFKDICVQGFSDEYEDVKLMLFRDPTFNVLDMQSTMRNIYLDEQSRKGWKGRIAGRGFAMA----TTASDIICHSCYEPGHIRRNCPKIKNRAKKKTKPAGATKWCSKHNTTSHSDEECYQQXQGGKCPEDTKDSSKAFTPCSDCTHCSST--------CNKHDSNNEVTVVDFTRDEDAFDSGFMFATCSRISGRNFAASSTGVGLLVDTGASATMFDNRLMP 251 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig1629.3993.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig1629.3993.1 >prot_H-elongata_contig1629.3993.1 ID=prot_H-elongata_contig1629.3993.1|Name=mRNA_H-elongata_contig1629.3993.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=248bp MEPGQNPDDYINQKHLLRLRVEKMGEKVSDRWFKDIIVTGFTDEYKDVRMback to top mRNA from alignment at H-elongata_contig1629:10239..11006- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig1629.3993.1 ID=mRNA_H-elongata_contig1629.3993.1|Name=mRNA_H-elongata_contig1629.3993.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=768bp|location=Sequence derived from alignment at H-elongata_contig1629:10239..11006- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig1629:10239..11006- >mRNA_H-elongata_contig1629.3993.1 ID=mRNA_H-elongata_contig1629.3993.1|Name=mRNA_H-elongata_contig1629.3993.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1488bp|location=Sequence derived from alignment at H-elongata_contig1629:10239..11006- (Himanthalia elongata Himel1 dioecious)back to top |