mRNA_H-elongata_contig16289.3991.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig16289.3991.1 vs. uniprot
Match: A0A6H5LI82_9PHAE (Nucleotid_trans domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5LI82_9PHAE) HSP 1 Score: 256 bits (653), Expect = 3.750e-81 Identity = 129/271 (47.60%), Postives = 173/271 (63.84%), Query Frame = 1
Query: 13 CSDWTAWMPPRTDPAVIMQVITEGYIPVEANFIKLMEENSRFSRDNIYLMCLDEYSERAIEL-MGFRCVPVIDHLNNRNVKSVWKLRVRVLACLLEAGYDVITSDSDALWLKDPAVDFDLPEVRGSSIVASRGNMPRGIVRRWKSTLCMGFVLFRAGPGMDI--FLVNMERLAIKIGDDQKALNFALSKLKVDWDRATDMSFISTD-FGRGTVAEI------GINVTLLPHNQYTRFCDKVPIGPNTTVAHCHAPKRGALKMAWMQKKGLW 795
C+DW W+PPR+DPA++MQV++ Y+ +E NFI+LME NS +RD++YLMC+D S E M RC+P + + + +W LR RV++CL+EAG DVI SD+DALWL DP DF+LP V SS+VASRG P+ + W +T+CMGFVLFRA + FL M+ L K DDQ ++N A L + WD+ +DM ++ +D FG GT+ + +VTLLPHN YTR CD+ PI T VAHC APK K WM + LW
Sbjct: 44 CADWMKWIPPRSDPAIVMQVVSRHYLELERNFIRLMELNSALTRDHLYLMCMDNVSVHFFESSMNIRCIP-LTAFDFPSHAEIWVLRARVVSCLVEAGQDVIMSDADALWLDDPFKDFNLPRVIDSSVVASRGKFPKPLGLEWGATMCMGFVLFRATGRRVVGEFLEVMDALVHKNKDDQISVNLAAENLGIVWDQESDMRYVESDSFGFGTIDTLVDENNQPFSVTLLPHNAYTRVCDETPISNKTVVAHCWAPKTADSKTGWMVQSKLW 313
BLAST of mRNA_H-elongata_contig16289.3991.1 vs. uniprot
Match: D8LSV3_ECTSI (Nucleotid_trans domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSV3_ECTSI) HSP 1 Score: 243 bits (621), Expect = 2.940e-75 Identity = 130/282 (46.10%), Postives = 172/282 (60.99%), Query Frame = 1
Query: 1 RNGNCSDWTAWMPPRTDPAVIMQVITEGYIPVEANFIKLMEENSRFSRDNIYLMCLDEYSERAIELMGFRCV-------PVIDHLNNRNVKSVWKLRVRVLACLLEAGYDVITSDSDALWLKDPAVDFDLPEVRGSSIVASRGNMPRGIVRRWKSTLCMGFVLFRAGPGMDI-FLVNMERLAIKIGDDQKALNFALSKLKVDWDRATDMSFI-STDFGRGTVAEI----GINVTLLPHNQYTRFCDKVPIGPNTTVAHCHAPKRGALKMAWMQKKGLWEYYD 807
R+ +C+D AW+PP+ PAV+ QV+++ Y+ V+ NFI ME +S FSR+N+YL+CLDE S + +G RCV PV H VW LR+ V CLL+AG DV+ SD+DA+WL DP DFD + R SSIVASRG MP + R W +T+CMGFVLFRAG F+ + ++ +DQ+A+N AL KL V WD +DMSF ST G G V I + V+LLPHN+YTR C + PI T VAHC + +G WM++ LW D
Sbjct: 124 RHASCADIVAWLPPQLQPAVVFQVVSKAYVSVQKNFISNMELHSTFSRENMYLICLDEESVESFGALGIRCVRFGCMGCPVSRH-------HVWALRIEVSVCLLKAGIDVLMSDADAVWLHDPMDDFDSDDYRDSSIVASRGAMPVPLFRTWGATICMGFVLFRAGSNAIYQFMEVVGEFTEELENDQQAVNLALQKLDVVWDPTSDMSFSDSTRSGVGVVNSIYSGESLTVSLLPHNKYTRSCRRTPISVETVVAHCISTDKGEGMATWMKEAHLWNVPD 398
BLAST of mRNA_H-elongata_contig16289.3991.1 vs. uniprot
Match: D8LK17_ECTSI (Nucleotid_trans domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK17_ECTSI) HSP 1 Score: 239 bits (610), Expect = 2.330e-74 Identity = 137/311 (44.05%), Postives = 185/311 (59.49%), Query Frame = 1
Query: 1 RNGNCSDWTAWMPPRTDPAVIMQVITEGYIPVEANFIKLMEENSRFSRDNIYLMCLDEYSERAIEL-MGFRCVPVIDHLNNRNVKSVWKLRVRVLACLLEAG-YDVITSDSDALWLKDPAVD-FDLPEVRGSSIVASRGNMPRGIVRRWKSTLCMGFVLFRAG--PGMDIFLVNMERLAIKIGDDQKALNFALSKLKVDWDRATDMSFI-STDFGRGTVAEIGIN----------------------------------VTLLPHNQYTRFCDKVPIGPNTTV-AHCHAPKRGA-LKMAWMQKKGLWEYYD 807
++ C DW AW+PPR+ PAV+MQV++EGYI +E NFI+LME NS F+R NIYLMC+D+ S+ + MG RCVP+ L+ + +W+LRVRV++CLLE G DVI SD+DALWL DPA D F + IVASRG+ P + W STLCMGF+LFRA GM FL M L ++ DDQ ++N A +L + WD+ +DM + ST +GRG +A +G + VTLLPH+ YTR C + + TTV AHC+ P++ A +K +WM+K LW D
Sbjct: 32 KDATCVDWAAWIPPRSRPAVVMQVVSEGYIDIERNFIRLMERNSGFTRRNIYLMCMDDASKNFFDTKMGIRCVPM-SALDLPTHEHIWQLRVRVVSCLLEIGNVDVIMSDADALWLADPAKDLFSRGDGGRGDIVASRGSWPNDQWKEWGSTLCMGFILFRARNVAGMKRFLDVMADLVVQNKDDQISVNRAAKQLGIVWDKNSDMRYEESTGYGRGIIAGLGTSNNSTSGGGGDLFIGQTGHGVVVGRGTREVEAPFRVTLLPHSAYTRLCGRRTLSNQTTVVAHCYFPQKEAGVKTSWMKKANLWSVQD 341
BLAST of mRNA_H-elongata_contig16289.3991.1 vs. uniprot
Match: A0A6H5KMQ8_9PHAE (Nucleotid_trans domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMQ8_9PHAE) HSP 1 Score: 239 bits (609), Expect = 3.830e-74 Identity = 126/276 (45.65%), Postives = 167/276 (60.51%), Query Frame = 1
Query: 1 RNGNCSDWTAWMPPRTDPAVIMQVITEGYIPVEANFIKLMEENSRFSRDNIYLMCLDEYSERAIELMGFRCVPVIDHLNNRNVKSVWKLRVRVLACLLEAGYDVITSDSDALWLKDPAVDFDLPEVRGSSIVASRGNMPRGIVRRWKSTLCMGFVLFRAG-PGMDIFLVNMERLAIKIGDDQKALNFALSKLKVDWDRATDMSFI-STDFGRGTVAEIGIN-----VTLLPHNQYTRFCDKVPIGPNTTVAHCHAPKRGALKMAWMQKKGLWEYYD 807
++ +CSD AW+PPR+ PAV+ QV++E Y +EANFI ME +S FSR+N+YL+CLDE S + +G RCV + VW LRV CLL AG DV+ SD+DA+WL+DP DF S++VASR MP + +W +T+CMGF FRAG M F+ + + ++GDDQKA+N AL KL V WD +DM F ST G G + I N VTLLPHN+YTR C + PI +T VAHC + +G WM++ LW D
Sbjct: 66 KDSSCSDMLAWLPPRSSPAVVFQVVSEPYASLEANFISNMELHSTFSRENLYLVCLDEESVAIFDGLGIRCVRYGCLGCPMSRLDVWVLRVEATLCLLNAGQDVLMSDADAIWLRDPTNDFASDLNMDSNVVASRAVMPFPLYHKWGATVCMGFAFFRAGGSAMQAFMTVVGEIVNELGDDQKAVNEALDKLGVVWDPTSDMDFTNSTRPGTGVIENITANGDPLKVTLLPHNKYTRSCRRTPISNDTIVAHCVSSDKGEGMATWMKEAHLWNLPD 341
BLAST of mRNA_H-elongata_contig16289.3991.1 vs. uniprot
Match: D7FGV6_ECTSI (Acetyltransferase (Isoleucine patch superfamily protein) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGV6_ECTSI) HSP 1 Score: 234 bits (596), Expect = 2.870e-71 Identity = 123/283 (43.46%), Postives = 172/283 (60.78%), Query Frame = 1
Query: 1 RNGNCSDWTAWMPPRTDPAVIMQVITEGYIPVEANFIKLMEENSRFSRDNIYLMCLDEYSERAIELMGFRCV-------PVIDHLNNRNVKSVWKLRVRVLACLLEAGYDVITSDSDALWLKDPAVDFDLPEVRGSSIVASRGNMPRGIVRRWKSTLCMGFVLFRAG-PGMDIFLVNMERLAIKIGDDQKALNFALSKLKVDWDRATDMSFI-STDFGRGTVAEIGIN-----VTLLPHNQYTRFCDKVPIGPNTTVAHCHAPKRGALKMAWMQKKGLWEYYD 807
++ +CSD AW+PPR+ PAV+ QV++E Y +E NFI ME +S FSR+N+YL+CLDE S + +G RCV PV + +W LR+ V CLL AG DV+ SD+DA+WL+DP D S++VASR MP + +W +T+CMGF FRAG M F+ +E +A ++G+DQ A+N AL+KL V WD +DM+F +T G G + I ++ VTLLPHN+YTR C + PI +T VAHC + +G WM++ LW D
Sbjct: 141 KDSSCSDMLAWLPPRSSPAVVFQVVSEPYASLEENFISNMELHSTFSRENLYLVCLDEESVAIFDGLGIRCVRYGCLGCPV-------SRGDIWVLRIDVTICLLNAGQDVLMSDADAIWLRDPTDDLASDAFLDSNVVASRAVMPFPLYHKWGATICMGFAFFRAGGSAMQAFMTVVEEIANELGNDQIAVNEALNKLDVVWDPMSDMNFTDNTRPGTGVIENITVDGGSLKVTLLPHNKYTRSCRRTPISNDTIVAHCVSSDKGEGMATWMKEAHLWNLPD 416
BLAST of mRNA_H-elongata_contig16289.3991.1 vs. uniprot
Match: A0A6H5JTX9_9PHAE (Nucleotid_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTX9_9PHAE) HSP 1 Score: 146 bits (368), Expect = 3.420e-38 Identity = 82/163 (50.31%), Postives = 107/163 (65.64%), Query Frame = 1
Query: 70 VITEGYIPVEANFIKLMEENSRFSRDNIYLMCLDEYSERAIEL-MGFRCVPVIDHLNNRNVKSVWKLRVRVLACLLEAGY-DVITSDSDALWLKDPAVD-FDLPEVRGSSIVASRGNMPRGIVRRWKSTLCMGFVLFRAG--PGMDIFLVNMERLAIKIGDDQ 543
V++EGYI +E NFI+LME NS F+R NIYLMC+D S+ + MG RCVP+ L+ + +W+LRV+V++CLLE G+ DVI SD+DALWL DPA D F I+ASRG+ P + W STLCMGF++FRA GM FL M L ++ DDQ
Sbjct: 5 VVSEGYIDIERNFIRLMERNSGFTRSNIYLMCMDGASKNFFDAKMGIRCVPM-SALDLPTHQDIWQLRVKVVSCLLEVGHVDVIMSDADALWLADPAKDLFSRGGGGRGDIIASRGSWPNEQSKEWGSTLCMGFIVFRARNVAGMKRFLDVMADLVVQNKDDQ 166
BLAST of mRNA_H-elongata_contig16289.3991.1 vs. uniprot
Match: D7FQM0_ECTSI (Nucleotid_trans domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQM0_ECTSI) HSP 1 Score: 137 bits (344), Expect = 9.250e-37 Identity = 73/149 (48.99%), Postives = 97/149 (65.10%), Query Frame = 1
Query: 118 MEENSRFSRDNIYLMCLDEYSERAIE-LMGFRCVPVIDHLNNRNVKSVWKLRVRVLACLLEAGYDVITSDSDALWLKDPAVDFDLPEVRGSSIVASRGNMPRGIVRRWKSTLCMGFVLFRAGPG---MDIFLVNMERLAIKIGDDQKAL 552
ME + F+R+++YLMCLD+ S E MG C+P + LN + + +W LRVRV++CL EAG+DVI SD+DALWL DP DF LP V SSIVASRG P+ + + W +T+CMGF+LFRA M F+ M L + DDQ A+
Sbjct: 1 MELRTSFTRNHLYLMCLDDDSLHFFESFMGIHCIP-LSGLNISSHEQIWVLRVRVVSCLAEAGHDVIMSDADALWLADPMKDFSLPGVIDSSIVASRGKKPKEVGKVWGATMCMGFILFRATANRTAMGKFVTVMNALVFESEDDQIAV 148
BLAST of mRNA_H-elongata_contig16289.3991.1 vs. uniprot
Match: A0A7S2LCA9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2LCA9_9STRA) HSP 1 Score: 77.8 bits (190), Expect = 1.540e-12 Identity = 60/207 (28.99%), Postives = 98/207 (47.34%), Query Frame = 1
Query: 238 NRNVKSVWKLRVRVLACLLEA--GYDVITSDSDALWLKDPAVDFDLPEVRGSSIVASRGNMPRGIVRRWKS-----------TLCMGFVLFRAGPGMDIFLVNMERLAIKI-GDDQKALNFALSKLKVDWD--------------RATDMSFISTDFGRGTVAEIGINVTLLPHNQYTRFCDKVP-IGPNTTVAHCHAP-KRGALKM 768
+R + +W LR+ ++ ++ +V+ +D+DA+WLKDP ++ P+ + S+IVASRG P + T+C GF FR P + N++ + DDQ A+N L+ L+ D + D S I + FG+ V I V++LP+ Q TR C + + N+ VAHC+ K G K+
Sbjct: 122 DRFLNKLWVLRLHIMQRIINTFPNLNVLYTDADAIWLKDPVQLYNHPQHQSSNIVASRGTYPEWCPLAMELHDDEKMHLNTVTICFGFTYFRNSPDLHQLAQNLQNAVARYRNDDQIAINCVLN-LQYDSNDDLHMNDPSSIAAFTQPDKSVIRSFFGK--VIAHNIKVSILPYEQVTRRCGRDEGMLENSVVAHCYTDLKEGQSKL 325
BLAST of mRNA_H-elongata_contig16289.3991.1 vs. uniprot
Match: A0A2J7TK26_METSI (Nucleotid_trans domain-containing protein n=1 Tax=Methylocella silvestris TaxID=199596 RepID=A0A2J7TK26_METSI) HSP 1 Score: 73.9 bits (180), Expect = 1.020e-11 Identity = 55/188 (29.26%), Postives = 94/188 (50.00%), Query Frame = 1
Query: 259 WKLRVRVLACLLEAGYDVITSDSDALWLKDPAVDFDLPEVRGSSIVASRGNM-PRGIVRRWKSTLCMGFVLFRAGPGMDIFLVNMERLAIKIGDDQKALNFALSKLKVDW---DR----ATDMSFISTDFG-RGTVAEIGINVTLLPHNQYTRFCDKVPIGPNTTVAHCHAPKRGALKMAWMQKKGLW 795
W R+ V+A +L AG D++ SD+DA+WL+DP + +V ++G + P ++R +C G + R+ G F N+ +A+ + DDQ A+N + + W DR D F ++ F G++ ++ I V LPH+++ R + +G N VAH A K+ + + GLW
Sbjct: 67 WLHRIDVIAEMLVAGDDIVHSDADAVWLRDPLARLT---ATSADLVFTQGTVFPSETLQRRGFVVCCGLMFIRSNAGAIEFWRNVRDVAVDVRDDQWAVNKVIDQSDCVWTLTDRYEAPCFDTVFHASRFIITGSMKDLAIEV--LPHHEFPRLME---LGENPFVAHPLADSPIDDKIDVLSESGLW 246
BLAST of mRNA_H-elongata_contig16289.3991.1 vs. uniprot
Match: A0A354V5R7_9PROT (Nucleotid_trans domain-containing protein n=1 Tax=Acetobacteraceae bacterium TaxID=1909293 RepID=A0A354V5R7_9PROT) HSP 1 Score: 73.6 bits (179), Expect = 2.420e-11 Identity = 55/186 (29.57%), Postives = 79/186 (42.47%), Query Frame = 1
Query: 289 LLEAGYDVITSDSDALWLKDPAVDFDLPEVRGSSIVASR-GNMPRGIVRRWKSTLCMGFVLFRAGPGMDIFLVNMERLAIKIGDDQKALNFALSKLKVDW----------DRATDMSFISTDFGR-------GTVAEIGINVTLLPHNQYTRFCDKVPIGPNTTVAHCHAPKRGALKMAWMQKKGL 792
L++ GYDV+ SD+DA+WL+DP +P +R + + R P I +W C GF FR G FL + + DDQ LN AL W R D S + T F R G + G+ + LPH+++ R + V H ++PK KM + GL
Sbjct: 159 LVKTGYDVVMSDADAVWLRDP-----VPYLRDADVAFQRIVYHPPAIASQWGFAACGGFNAFRGGVKTTAFLERCVQENRILFDDQVVLNLALLDEDPHWHCEHPDWTLPSRQNDRSALETAFARCANAPIRGDLKTSGLQLLALPHDKFWRHAFVSTPVRDMVVCHPNSPKDDLEKMQLLDVMGL 339 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig16289.3991.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 13
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig16289.3991.1 >prot_H-elongata_contig16289.3991.1 ID=prot_H-elongata_contig16289.3991.1|Name=mRNA_H-elongata_contig16289.3991.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=269bp RNGNCSDWTAWMPPRTDPAVIMQVITEGYIPVEANFIKLMEENSRFSRDNback to top mRNA from alignment at H-elongata_contig16289:1026..1832- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig16289.3991.1 ID=mRNA_H-elongata_contig16289.3991.1|Name=mRNA_H-elongata_contig16289.3991.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=807bp|location=Sequence derived from alignment at H-elongata_contig16289:1026..1832- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig16289:1026..1832- >mRNA_H-elongata_contig16289.3991.1 ID=mRNA_H-elongata_contig16289.3991.1|Name=mRNA_H-elongata_contig16289.3991.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1614bp|location=Sequence derived from alignment at H-elongata_contig16289:1026..1832- (Himanthalia elongata Himel1 dioecious)back to top |