mRNA_H-elongata_contig162729.3979.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig162729.3979.1
Unique NamemRNA_H-elongata_contig162729.3979.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig162729.3979.1 vs. uniprot
Match: D7G8A1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8A1_ECTSI)

HSP 1 Score: 237 bits (605), Expect = 2.450e-77
Identity = 114/135 (84.44%), Postives = 123/135 (91.11%), Query Frame = 1 
Query:   10 QEAAGSFALLFMVFPFNSFLGNTWSAWIQHFFAVMIMDYTNGGAQVNPAMTVGTFFYGWNDQVSLAVRILGQMVGGFYAFPIMAKLLPSYAVASMGGPTLAAGASTGQGMIWEFGSTLALMLLVYIAATQVSTTG 414
            QE  GSFALL MVFPFNSFLG+TWSAWIQHFF+VMI DYTNGGAQVNPAM+VGTFFYGWNDQ SL VRI+GQMVGGFYAFPIMAKLLPSYA +SMGGPTLAAGASTGQGM WEFGST AL+L+VY+AATQ+   G
Sbjct:   12 QETFGSFALLMMVFPFNSFLGDTWSAWIQHFFSVMITDYTNGGAQVNPAMSVGTFFYGWNDQSSLVVRIVGQMVGGFYAFPIMAKLLPSYATSSMGGPTLAAGASTGQGMAWEFGSTFALILIVYVAATQIGLPG 146
[Close]
BLAST of mRNA_H-elongata_contig162729.3979.1 vs. uniprot
Match: A0A835Z8P0_9STRA (Aquaporin-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8P0_9STRA)

HSP 1 Score: 148 bits (374), Expect = 2.670e-42
Identity = 72/134 (53.73%), Postives = 91/134 (67.91%), Query Frame = 1 
Query:    1 VRFQEAAGSFALLFMVFPFNSFLGNTWSAWIQHFFAVMIMDYTNGGAQVNPAMTVGTFFYGWNDQVSLAVRILGQMVGGFYAFPIMAKLLPSYAVASMGGPTLAAGASTGQGMIWEFGSTLALMLLVYIAATQV 402
            V  QE   SF +L ++FPF SFLG+TW  W  HFF VM+ D+  GG+QVNPA+++ T  YGWN   S AVRI GQ+VGG  AFP++A++LP Y    MGGP L    S   G  WEFG T AL++LVY+AATQ+
Sbjct:    8 VFLQECFASFLMLVLLFPFGSFLGDTWMGWTAHFFCVMLHDWITGGSQVNPAVSIATTLYGWNTPASAAVRIAGQLVGGLAAFPVVARVLPPYV--KMGGPMLNT-TSVADGCAWEFGLTFALLILVYVAATQI 138
[Close]
BLAST of mRNA_H-elongata_contig162729.3979.1 vs. uniprot
Match: K8YV92_NANGC (Aquaporin sip1-2 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=K8YV92_NANGC)

HSP 1 Score: 112 bits (280), Expect = 4.140e-28
Identity = 57/135 (42.22%), Postives = 82/135 (60.74%), Query Frame = 1 
Query:   10 QEAAGSFALLFMVFPFNSFLGNTWSAWIQHFFAVMIMDYTNGGAQVNPAMTVGTFFYGWNDQVSLAVRILGQMVGGFYAFPIMAKLLPSYAVASMGGPTLAAGASTGQGMIWEFGSTLALMLLVYIAATQVSTTG 414
            QE  G+  +  +++PF   LG+TW+AW+ HFF VM+ D  +GG+QVNP+++V  F +G        VRIL Q+  G  A+P++ KL PSY    +GGP L  G ST  G + EF  T AL+ L+Y+A T +   G
Sbjct:   18 QEFFGALLMFLVLWPFVGVLGDTWTAWVAHFFFVMLCDIVSGGSQVNPSVSVAMFVHGAISFPGAIVRILAQLAAGVVAYPLLQKLSPSYV--GVGGPCLQDGVSTTTGALAEFTLTFALLTLIYLAITIIGAPG 150
[Close]
BLAST of mRNA_H-elongata_contig162729.3979.1 vs. uniprot
Match: A0A7S3XRL2_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XRL2_HETAK)

HSP 1 Score: 79.7 bits (195), Expect = 7.310e-16
Identity = 42/114 (36.84%), Postives = 67/114 (58.77%), Query Frame = 1 
Query:   43 MVF-PFNSFLGNTWSAWIQHFFAVMIMDYTNGGAQVNPAMTVGTFFYGWNDQVSLAVRILGQMVGGFYAFPIMAKLLPSYAVASMGGPTLAAGASTGQGMIWEFGSTLALMLLV 381
            M+F P  +FLG++W+AWI HFF V++ D    G+QVNPA++V  + + W     L  R++GQ +     FP++    PS+   S  GP +A G +  + +  EF  T+ LML++
Sbjct:    2 MIFTPLCTFLGDSWNAWIMHFFLVILADVITVGSQVNPAVSVAIYLHDWIPFNGLCARLIGQGLAACIVFPMLGVFSPSHVPFS--GPEIAEGLAIREAITTEFLVTMGLMLVI 113
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig162729.3979.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7G8A1_ECTSI2.450e-7784.44Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835Z8P0_9STRA2.670e-4253.73Aquaporin-like protein n=1 Tax=Tribonema minus Tax... [more]
K8YV92_NANGC4.140e-2842.22Aquaporin sip1-2 n=2 Tax=Monodopsidaceae TaxID=425... [more]
A0A7S3XRL2_HETAK7.310e-1636.84Hypothetical protein (Fragment) n=2 Tax=Heterosigm... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig162729contigH-elongata_contig162729:221..1250 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score65.1
Seed ortholog evalue3e-08
Seed eggNOG ortholog159749.K0SNG6
EggNOG free text desc.Belongs to the MIP aquaporin (TC 1.A.8) family
EggNOG OGs2CGDK@1,2SA3Q@2759,2XANQ@2836
COG Functional cat.P
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionMajor intrinsic protein
Ec32 orthologEc-19_003710.1
Exons3
Model size420
Cds size420
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig162729.3979.1prot_H-elongata_contig162729.3979.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig162729 221..1250 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929951.9279754-CDS-H-elongata_contig162729:220..4361622929951.9279754-CDS-H-elongata_contig162729:220..436Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig162729 221..436 -
1691679220.839769-CDS-H-elongata_contig162729:220..4361691679220.839769-CDS-H-elongata_contig162729:220..436Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig162729 221..436 -
1622929951.9497702-CDS-H-elongata_contig162729:691..7781622929951.9497702-CDS-H-elongata_contig162729:691..778Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig162729 692..778 -
1691679220.8593764-CDS-H-elongata_contig162729:691..7781691679220.8593764-CDS-H-elongata_contig162729:691..778Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig162729 692..778 -
1622929951.97932-CDS-H-elongata_contig162729:1133..12501622929951.97932-CDS-H-elongata_contig162729:1133..1250Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig162729 1134..1250 -
1691679220.8703017-CDS-H-elongata_contig162729:1133..12501691679220.8703017-CDS-H-elongata_contig162729:1133..1250Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig162729 1134..1250 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig162729.3979.1

>prot_H-elongata_contig162729.3979.1 ID=prot_H-elongata_contig162729.3979.1|Name=mRNA_H-elongata_contig162729.3979.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=140bp
VRFQEAAGSFALLFMVFPFNSFLGNTWSAWIQHFFAVMIMDYTNGGAQVN
PAMTVGTFFYGWNDQVSLAVRILGQMVGGFYAFPIMAKLLPSYAVASMGG
PTLAAGASTGQGMIWEFGSTLALMLLVYIAATQVSTTGC*
back to top

mRNA from alignment at H-elongata_contig162729:221..1250-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig162729.3979.1 ID=mRNA_H-elongata_contig162729.3979.1|Name=mRNA_H-elongata_contig162729.3979.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1030bp|location=Sequence derived from alignment at H-elongata_contig162729:221..1250- (Himanthalia elongata Himel1 dioecious)
GTGCGATTTCAGGAGGCGGCGGGGTCGTTCGCCCTGCTGTTTATGGTGTT
CCCCTTCAACAGCTTCTTGGGAAATACGTGGTCCGCCTGGATACAGCACT
TCTTCGCCGTGATGATCGTGAGTGCGTGCAGCCTCCTCTAGCCCCCGTCG
TTCGCAACGGGAGATCAGTACGGCAAGAGTGGGTAGACTTTGCAATGCCG
GACGGTTGTGATCGATTCGAGACGGACGGTTTGCATCTGTGTGTTGGGAG
GATACAACTTGTTGGAGGAGACGTTTTTTCGTCCTTTCTCACAGCGCGGC
TAGAGGTTTGGTCTGTGCGCTGACACCGACGACACCCCGCGTAGTCCAGC
GTAAGTGTCAGAAAGCTTGCCCAAGCGGCTTGCGCGCCTCGAGGTACATT
TTGCGTAAAAATATTGGAACTCTCTTTAACGGCCTCTCGTTCGTTCGCTC
GCTCGCCCGCACCCGCGCGCAGATGGATTACACAAACGGCGGCGCTCAGG
TCAACCCGGCCATGACCGTCGGGACATTCTTCTACGGCTGGAACGATCAG
GTCTCCTTGGTGAGTCTGTGGAGTAGGAAATAAAAAGAAGAGAACTCCAC
AGAAATAAAGTTTGCTGAGGAGGAAGCACTGAATTGATATTTCGCGTACG
ACTTTAACTTGAGAATGGTGTTTCGTGTGTGTGAGGGAAGGGTAGAGGGT
AGCTAAGGAGACGAATGTGTTATACTAATATATAATAATCCATGACCCCA
ACCCCTGCGCGCCTCTCGGGCTGGCCGTCCGGTGGCGGGGCCACCCGCGT
TGACCCGGCTTTAGGCTGTCCGCATCCTGGGGCAAATGGTGGGAGGCTTC
TACGCCTTCCCGATCATGGCCAAGCTCCTCCCCAGCTACGCGGTGGCCAG
CATGGGGGGTCCCACGCTGGCGGCGGGTGCGAGCACGGGACAGGGCATGA
TCTGGGAGTTCGGCTCCACGCTGGCGCTTATGCTCTTGGTCTACATTGCT
GCCACGCAGGTATCCACCACAGGATGTTGA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig162729:221..1250-

>mRNA_H-elongata_contig162729.3979.1 ID=mRNA_H-elongata_contig162729.3979.1|Name=mRNA_H-elongata_contig162729.3979.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=840bp|location=Sequence derived from alignment at H-elongata_contig162729:221..1250- (Himanthalia elongata Himel1 dioecious)
GTGCGATTTCAGGAGGCGGCGGGGTCGTTCGCCCTGCTGTTTATGGTGTT
CCCCTTCAACAGCTTCTTGGGAAATACGTGGTCCGCCTGGATACAGCACT
TCTTCGCCGTGATGATCGTGCGATTTCAGGAGGCGGCGGGGTCGTTCGCC
CTGCTGTTTATGGTGTTCCCCTTCAACAGCTTCTTGGGAAATACGTGGTC
CGCCTGGATACAGCACTTCTTCGCCGTGATGATCATGGATTACACAAACG
GCGGCGCTCAGGTCAACCCGGCCATGACCGTCGGGACATTCTTCTACGGC
TGGAACGATCAGGTCTCCTTGATGGATTACACAAACGGCGGCGCTCAGGT
CAACCCGGCCATGACCGTCGGGACATTCTTCTACGGCTGGAACGATCAGG
TCTCCTTGGCTGTCCGCATCCTGGGGCAAATGGTGGGAGGCTTCTACGCC
TTCCCGATCATGGCCAAGCTCCTCCCCAGCTACGCGGTGGCCAGCATGGG
GGGTCCCACGCTGGCGGCGGGTGCGAGCACGGGACAGGGCATGATCTGGG
AGTTCGGCTCCACGCTGGCGCTTATGCTCTTGGTCTACATTGCTGCCACG
CAGGTATCCACCACAGGATGTTGAGCTGTCCGCATCCTGGGGCAAATGGT
GGGAGGCTTCTACGCCTTCCCGATCATGGCCAAGCTCCTCCCCAGCTACG
CGGTGGCCAGCATGGGGGGTCCCACGCTGGCGGCGGGTGCGAGCACGGGA
CAGGGCATGATCTGGGAGTTCGGCTCCACGCTGGCGCTTATGCTCTTGGT
CTACATTGCTGCCACGCAGGTATCCACCACAGGATGTTGA
back to top