mRNA_H-elongata_contig16272.3977.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig16272.3977.1
Unique NamemRNA_H-elongata_contig16272.3977.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig16272.3977.1 vs. uniprot
Match: A0A6H5JET4_9PHAE (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JET4_9PHAE)

HSP 1 Score: 161 bits (408), Expect = 3.830e-42
Identity = 78/109 (71.56%), Postives = 87/109 (79.82%), Query Frame = 1
Query:  304 DEDVRRLLPIYIEESFPFVLTRKSAIHRSVIADVTDNLMHAKGFKACSEVLQQAHRHTFHLAEAKYYSMLVHRRAEQLGSGAEDNFGSFEDADGYNGFSPSAPYLSMVW 630
            + DV  LLP+Y++ESFPF LTRKSAIHR V+A+V DNLMHAKGF A SE LQQAH + FH  E KYYSML+ RR EQL +G ED FGSFEDADGYNGFSPS  YLS VW
Sbjct:    6 NSDVLALLPLYVQESFPFFLTRKSAIHRDVVAEVADNLMHAKGFSASSEALQQAHLYRFHSMELKYYSMLLWRREEQLDAGVEDEFGSFEDADGYNGFSPSEHYLSTVW 114          
BLAST of mRNA_H-elongata_contig16272.3977.1 vs. uniprot
Match: A0A6H5KSM2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSM2_9PHAE)

HSP 1 Score: 110 bits (274), Expect = 9.910e-25
Identity = 76/228 (33.33%), Postives = 106/228 (46.49%), Query Frame = 1
Query:    7 PPNPTMLKTI---RVGDHNLRTVFVWLPDLTH---PCGVPGGRLPCPRCKTNHKVIIKGWTQKGSRRGVLRDSCCDLVGKFYMCNACAEHNESKPKA--ISVFFQGWDEDVRRLLPIYIEESFPFVLTRKSAIHRSVIADVTDNLMHAKGFKACSEVLQQAHRHTFHLAEAKYYSMLVHRRAEQLGS----------GAEDNFGSFEDADGYNGFSPSAPYLSMVWSR 636
            PP P++ ++     V    L+ VFVW+P+       C      +PCP C    +    GW    +RR  L    C L+G  Y C  C + N  K      +  F+ WD DV   +  ++ + FPFVLTRK+AI RS+I  + D+L+  KGF A S+ LQ A+  T+      Y S L +RR  QL            G    F    DA G+N   PSA YL  +W +
Sbjct:   42 PPLPSLQQSAGIPSVEPFYLKKVFVWVPEYIWNEIDC------IPCPHC--GERGQPDGWNTD-ARRVFLEQDVCYLIGYRYYCKRCTDANAMKNSEDRTTATFKAWDPDVLARMDDFVSKEFPFVLTRKAAISRSLIDRLADDLLEGKGFAATSKSLQNAYTATYFKLYRSYVS-LANRRVSQLKGLGLLGPDADVGKIPKFEEMADALGFNSRHPSAHYLGDIWHK 259          
BLAST of mRNA_H-elongata_contig16272.3977.1 vs. uniprot
Match: A0A6H5KFL9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFL9_9PHAE)

HSP 1 Score: 105 bits (263), Expect = 3.310e-24
Identity = 51/71 (71.83%), Postives = 54/71 (76.06%), Query Frame = 1
Query:  418 MHAKGFKACSEVLQQAHRHTFHLAEAKYYSMLVHRRAEQLGSGAEDNFGSFEDADGYNGFSPSAPYLSMVW 630
            MHAKGF A SE LQQAH + FH  E KYYSML+ RR EQL  G +D FGSFEDADGYNGFSPS  YLS VW
Sbjct:    1 MHAKGFSASSEALQQAHLYRFHSMELKYYSMLLWRREEQLDGGVQDEFGSFEDADGYNGFSPSEHYLSTVW 71          
BLAST of mRNA_H-elongata_contig16272.3977.1 vs. uniprot
Match: D7FIV2_ECTSI (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIV2_ECTSI)

HSP 1 Score: 108 bits (269), Expect = 1.500e-23
Identity = 65/208 (31.25%), Postives = 100/208 (48.08%), Query Frame = 1
Query:   40 VGDHNLRTVFVWLPDLTHPCGVPGGRLPCPRCKTNHKVIIKGWTQKGSRRGVLRDSCCDLVGKFYMCNACAEHNESKPK--AISVFFQGWDEDVRRLLPIYIEESFPFVLTRKSAIHRSVIADVTDNLMHAKGFKACSEVLQQAHRHTFHLAEAKYYSMLVHRRAEQ-------LGSGAEDNFGSFEDADGYNGFSPSAPYLSMVWSR 636
            +G   L+ VFVW+P+           +PCP C  N +    GW  +  RR  L D  C L+G  Y+C  C E N+ +P+    +  F  WD  V   +  Y+ + FPFVLT+K+AI +SV+  + D+L+   GF A S+ L   + H  +  + + Y  L +R   +       +  G    F S  D  G++   PSA YL  +W +
Sbjct:   30 LGPFYLKKVFVWVPEYLWD---EIEYIPCPHC--NKRAQPDGWNTE-PRRVFLEDDVCYLIGYRYLCKGCTEANKGRPEDERTTQTFNAWDAGVLATMDDYVSKEFPFVLTKKAAISKSVVDRLADDLLEGTGFAAASKSLANTY-HARYFNQLRSYVSLANRCVSRHKGMWPNVDLGMIPKFSSIGDPSGFHSSPPSAHYLGDIWHK 230          
BLAST of mRNA_H-elongata_contig16272.3977.1 vs. uniprot
Match: A0A8H7QM51_9FUNG (Uncharacterized protein n=1 Tax=Mucor plumbeus TaxID=97098 RepID=A0A8H7QM51_9FUNG)

HSP 1 Score: 74.3 bits (181), Expect = 7.810e-12
Identity = 56/199 (28.14%), Postives = 83/199 (41.71%), Query Frame = 1
Query:   64 VFVWLPDLTHPCGVPGGRLPCPRCKTNHKV----IIKGWTQKGSRRGVLR-DSCCDLVGKFYMCNACAEHNESKPKAISVFFQGWDEDVRRLLPIYIEESFPFVLTRKSAIHRSVIADVTDNLMHAKGFKACSEVLQQAHRHTFHLAEAKY---YSMLVHRRAEQLGSGAE-DNFGSFEDADGYNGFSPSAPYLSMVWS 633
            VF+W P           +  CP C  N  V    I  G+T+    R ++    C  L+  FY CN C           +    G D ++ R LPI  +  FP  LT++S I R +   +   +  + G    S +LQ+ H   +   + +Y   Y   V   +  +        F  F D DGYNG+ PSA YLS V++
Sbjct:  208 VFLWFPHFLFYNN--NQKFKCPECAKNDSVPRFMISDGYTKSPLARRIIDIKDCFYLMSCFYKCNKC-----------NCRIIGTDTELIRKLPIIAQTEFPAFLTKRSGISRDLADLMRPLIQSSTGPLRLSNILQELHLKRYDTLQFQYLANYKYRVDNTSSLISLPVPAPEFSKFNDKDGYNGYYPSANYLSFVYT 393          
BLAST of mRNA_H-elongata_contig16272.3977.1 vs. uniprot
Match: A0A8H7UPD2_9FUNG (Uncharacterized protein n=1 Tax=Mucor plumbeus TaxID=97098 RepID=A0A8H7UPD2_9FUNG)

HSP 1 Score: 73.9 bits (180), Expect = 8.700e-12
Identity = 56/199 (28.14%), Postives = 83/199 (41.71%), Query Frame = 1
Query:   64 VFVWLPDLTHPCGVPGGRLPCPRCKTNHKV----IIKGWTQKGSRRGVLR-DSCCDLVGKFYMCNACAEHNESKPKAISVFFQGWDEDVRRLLPIYIEESFPFVLTRKSAIHRSVIADVTDNLMHAKGFKACSEVLQQAHRHTFHLAEAKY---YSMLVHRRAEQLGSGAE-DNFGSFEDADGYNGFSPSAPYLSMVWS 633
            VF+W P           +  CP C  N  V    I  G+T+    R ++    C  L+  FY CN C           +    G D ++ R LPI  +  FP  LT++S I R +   +   +  + G    S +LQ+ H   +   + +Y   Y   V   +  +        F  F D DGYNG+ PSA YLS V++
Sbjct:  199 VFLWFPHFLFYNN--NQKFKCPECAKNDSVPRFMISDGYTKSPLARRIIDIKDCFYLMSCFYKCNKC-----------NCRIIGTDTELIRQLPIIAQTEFPAFLTKRSGISRDLADLMRPLIQSSTGPLRLSNILQELHLKRYDTLQFQYLVNYKYRVDNSSSLISLQIPAPEFSKFNDKDGYNGYYPSANYLSFVYT 384          
BLAST of mRNA_H-elongata_contig16272.3977.1 vs. uniprot
Match: A0A8H7R9E4_9FUNG (Uncharacterized protein n=1 Tax=Mucor saturninus TaxID=64648 RepID=A0A8H7R9E4_9FUNG)

HSP 1 Score: 70.1 bits (170), Expect = 1.840e-10
Identity = 49/177 (27.68%), Postives = 82/177 (46.33%), Query Frame = 1
Query:  118 LPCPRCKTNHKVIIKGWTQKG-SRRGVLRDSCCDLVGKFYMCNACAEHNESKPKAISVFFQGWDEDVRRLLPIYIEESFPFVLTRKSAIHRSVIADVTDNLMHAKGFKACSEVLQQAHRHTFHLAEAKYYSMLVHRRAE-----QLGSGAEDNFGSFEDADGYNGFSPSAPYLSMVW 630
            L CP C+   K+ +KG+ +K  +RR +  + C  L+   Y C         + K +   F G +  + R LP++++  FP VL+ +S + + +   +     H  G    S+VL+  H   +   + +YY+ L H          L S     F  F+D   YNG+ PSA Y+S V+
Sbjct:  262 LTCPTCEA--KIGVKGFNKKPIARRIIDLNDCFYLMTTRYKC---------RKKDVKHTFDGCNPALIRQLPLHLQAEFPVVLSHRSGLSKMLFKLMRPLFQHGIGPHRMSKVLRVMHTEKYDELQLQYYTTLDHDAQSPSVLSMLQSRQYPEFSQFKDKMQYNGYVPSANYISYVY 427          
BLAST of mRNA_H-elongata_contig16272.3977.1 vs. uniprot
Match: A0A0C2XZE5_HEBCY (Uncharacterized protein n=1 Tax=Hebeloma cylindrosporum h7 TaxID=686832 RepID=A0A0C2XZE5_HEBCY)

HSP 1 Score: 70.1 bits (170), Expect = 2.250e-10
Identity = 50/201 (24.88%), Postives = 83/201 (41.29%), Query Frame = 1
Query:   67 FVWLPDLTHPCGVPGGRLPCPRCK---------TNHKVIIKGWTQKGSRRGVLRDSCCDLVGKFYMCNACAEHNESKPKAISVFFQGWDEDVRRLLPIYIEESFPFVLTRKSAIHRSVIADVTDNLMHAKGFKACSEVLQQAHRHTFHLAEAKYYSMLV--HRRAEQLGSGAEDNFGSFEDADGYNGFSPSAPYLSMVWSR 636
            F+WLP L         ++PCP CK         +   + + GW  +  RR V  + C  + G  Y CN    H + K       FQ W   +  +LP  +   F F LT +  +   ++A +  +     G    SE+++  H   + L + +Y  M+   H  +  +       F S+ D +GY G++PS PY    +  
Sbjct:  397 FIWLPHLFV-------KIPCPSCKKAGRTRADGSTPMLYLLGWP-RAPRRVVDIEFCVYIFGYRYNCN----HEDCKET-----FQSWSSAILNVLPRPLAAQFTFHLTFRCGLTDRLVALLRSSFQRGLGPTPFSEMIRNFHVRYYELLQIQYLEMVKVRHYGSSSMFLAKHVRFSSWNDRNGYAGYTPSGPYFRAFYDN 580          
BLAST of mRNA_H-elongata_contig16272.3977.1 vs. uniprot
Match: A0A166K076_9AGAM (3'-5' exonuclease domain-containing protein (Fragment) n=1 Tax=Fibularhizoctonia sp. CBS 109695 TaxID=436010 RepID=A0A166K076_9AGAM)

HSP 1 Score: 68.2 bits (165), Expect = 9.830e-10
Identity = 44/162 (27.16%), Postives = 69/162 (42.59%), Query Frame = 1
Query:  139 TNHKVIIKGWTQKGSRRGVLRDSCCDLVGKFYMCNACAEHNESKPKAISVFFQGWDEDVRRLLPIYIEESFPFVLTRKSAIHRSVIADVTDNLMHAKGFKACSEVLQQAHRHTFHLAEAKYYSMLVHRRAEQLGS--GAEDNFGSFEDADGYNGFSPSAPYL 618
            T + +  KGW  +  RR V    C  ++G  Y+C  C              +Q W   +  +LP  +   F   LT +S +  SV+A +  +  H  G    +E+++  H   +     +Y  M+  R    +    G    FGSF D +GY GF+PSA Y 
Sbjct:    8 TANMLWAKGWA-RAPRRVVDLAECIYIIGYRYLCGQCKSS-----------YQSWSPSLLSVLPRLLSMEFTHHLTYRSGLTDSVVALMRTSFQHGIGPGPFAEIIRTNHYRRYDHLHLQYLEMVYARSTSAMARLMGKSSPFGSFNDREGYAGFTPSAQYF 157          
BLAST of mRNA_H-elongata_contig16272.3977.1 vs. uniprot
Match: A0A1C7LQI6_GRIFR (3'-5' exonuclease domain-containing protein n=1 Tax=Grifola frondosa TaxID=5627 RepID=A0A1C7LQI6_GRIFR)

HSP 1 Score: 66.6 bits (161), Expect = 3.200e-9
Identity = 54/199 (27.14%), Postives = 82/199 (41.21%), Query Frame = 1
Query:   67 FVWLPDLTHPCGVPGGRLPCPRCKTNHKVI---------IKGWTQKGSRRGVLRDSCCDLVGKFYMCNACAEHNESKPKAISVFFQGWDEDVRRLLPIYIEESFPFVLTRKSAIHRSVIADVTDNLMHAKGFKACSEVLQQAHRHTFHLAEAKYYSMLVHRRAEQLGSGAED--NFGSFEDADGYNGFSPSAPYLSMVW 630
            FVWLP       V  GR+PCP C +  +V            GW+ K  RR V  + C  ++G  Y C     H E K       +Q W   +   LP  +   F   LT ++ I   ++A +        G    +++++  H   +     +Y  M+  R+             FGSF+D DGY G++PSA Y   V+
Sbjct:  305 FVWLPH------VLVGRIPCPNCVSASRVSKGAQPVYLRCHGWS-KAPRRVVDLERCIWIIGYRYYC----PHPECKKS-----YQSWSPALLAALPRALSLDFDHHLTYRNGITEPLMAFMRTLYHRGVGPVPLAQIIRSFHIRYYERLHLQYVEMVYARQNSAFAHLLPKFKAFGSFDDRDGYAGYTPSARYFRDVY 487          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig16272.3977.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
A0A6H5JET4_9PHAE3.830e-4271.563'-5' exonuclease domain-containing protein n=1 Ta... [more]
A0A6H5KSM2_9PHAE9.910e-2533.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KFL9_9PHAE3.310e-2471.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FIV2_ECTSI1.500e-2331.253'-5' exonuclease domain-containing protein n=1 Ta... [more]
A0A8H7QM51_9FUNG7.810e-1228.14Uncharacterized protein n=1 Tax=Mucor plumbeus Tax... [more]
A0A8H7UPD2_9FUNG8.700e-1228.14Uncharacterized protein n=1 Tax=Mucor plumbeus Tax... [more]
A0A8H7R9E4_9FUNG1.840e-1027.68Uncharacterized protein n=1 Tax=Mucor saturninus T... [more]
A0A0C2XZE5_HEBCY2.250e-1024.88Uncharacterized protein n=1 Tax=Hebeloma cylindros... [more]
A0A166K076_9AGAM9.830e-1027.163'-5' exonuclease domain-containing protein (Fragm... [more]
A0A1C7LQI6_GRIFR3.200e-927.143'-5' exonuclease domain-containing protein n=1 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig16272contigH-elongata_contig16272:434..1229 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score108.2
Seed ortholog evalue4.6e-21
Seed eggNOG ortholog2880.D7FIV2
Preferred nameWRN
KEGG koko:K10900,ko:K20777
GOsGO:0000018,GO:0000019,GO:0000217,GO:0000287,GO:0000400,GO:0000403,GO:0000405,GO:0000723,GO:0000724,GO:0000725,GO:0000731,GO:0000738,GO:0000781,GO:0001302,GO:0001325,GO:0003674,GO:0003676,GO:0003677,GO:0003678,GO:0003682,GO:0003684,GO:0003824,GO:0004003,GO:0004386,GO:0004518,GO:0004527,GO:0004529,GO:0004536,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005657,GO:0005694,GO:0005730,GO:0005737,GO:0005813,GO:0005815,GO:0005856,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006275,GO:0006281,GO:0006284,GO:0006302,GO:0006308,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006979,GO:0006996,GO:0007154,GO:0007275,GO:0007568,GO:0007569,GO:0008026,GO:0008094,GO:0008104,GO:0008150,GO:0008152,GO:0008156,GO:0008296,GO:0008297,GO:0008309,GO:0008310,GO:0008311,GO:0008408,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009267,GO:0009314,GO:0009378,GO:0009411,GO:0009416,GO:0009605,GO:0009628,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009987,GO:0009991,GO:0010212,GO:0010225,GO:0010259,GO:0010332,GO:0010556,GO:0010558,GO:0010604,GO:0010605,GO:0010941,GO:0015630,GO:0016043,GO:0016462,GO:0016604,GO:0016607,GO:0016787,GO:0016788,GO:0016796,GO:0016817,GO:0016818,GO:0016887,GO:0016895,GO:0017111,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019439,GO:0022607,GO:0030145,GO:0031297,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031667,GO:0031668,GO:0031669,GO:0031974,GO:0031981,GO:0032200,GO:0032356,GO:0032357,GO:0032392,GO:0032501,GO:0032502,GO:0032508,GO:0033036,GO:0033365,GO:0033554,GO:0034504,GO:0034613,GO:0034641,GO:0034645,GO:0034654,GO:0034655,GO:0040008,GO:0040009,GO:0042162,GO:0042592,GO:0042594,GO:0042623,GO:0042802,GO:0042803,GO:0042981,GO:0042995,GO:0043005,GO:0043067,GO:0043085,GO:0043138,GO:0043140,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043565,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044446,GO:0044451,GO:0044464,GO:0044806,GO:0044877,GO:0045005,GO:0045910,GO:0045911,GO:0045934,GO:0045935,GO:0045950,GO:0046483,GO:0046700,GO:0046872,GO:0046914,GO:0046983,GO:0048478,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048856,GO:0048869,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051054,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051276,GO:0051336,GO:0051345,GO:0051641,GO:0051716,GO:0051880,GO:0060249,GO:0060255,GO:0060542,GO:0061749,GO:0061820,GO:0061821,GO:0061849,GO:0062037,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070035,GO:0070336,GO:0070337,GO:0070727,GO:0071103,GO:0071214,GO:0071478,GO:0071479,GO:0071480,GO:0071496,GO:0071704,GO:0071840,GO:0071897,GO:0080090,GO:0090304,GO:0090305,GO:0090329,GO:0090656,GO:0090657,GO:0090737,GO:0097159,GO:0097458,GO:0098530,GO:0098687,GO:0104004,GO:0120025,GO:0140097,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901575,GO:1901576,GO:1902570,GO:1905773,GO:2000104,GO:2000112,GO:2000113
EggNOG free text desc.3'-5' exonuclease activity
EggNOG OGsKOG4373@1,KOG4373@2759
EC3.1.11.1,3.6.4.12
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03032,ko03400
Hectar predicted targeting categoryother localisation
Exons2
Model size639
Cds size618
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig16272.3977.1prot_H-elongata_contig16272.3977.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig16272 455..1229 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929951.770064-UTR-H-elongata_contig16272:433..4541622929951.770064-UTR-H-elongata_contig16272:433..454Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig16272 434..454 +
1691679220.7972128-UTR-H-elongata_contig16272:433..4541691679220.7972128-UTR-H-elongata_contig16272:433..454Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig16272 434..454 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929951.7867424-CDS-H-elongata_contig16272:454..7131622929951.7867424-CDS-H-elongata_contig16272:454..713Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16272 455..713 +
1691679220.8108273-CDS-H-elongata_contig16272:454..7131691679220.8108273-CDS-H-elongata_contig16272:454..713Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16272 455..713 +
1622929951.8085034-CDS-H-elongata_contig16272:870..12291622929951.8085034-CDS-H-elongata_contig16272:870..1229Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16272 871..1229 +
1691679220.8189857-CDS-H-elongata_contig16272:870..12291691679220.8189857-CDS-H-elongata_contig16272:870..1229Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16272 871..1229 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig16272.3977.1

>prot_H-elongata_contig16272.3977.1 ID=prot_H-elongata_contig16272.3977.1|Name=mRNA_H-elongata_contig16272.3977.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=206bp
MLKTIRVGDHNLRTVFVWLPDLTHPCGVPGGRLPCPRCKTNHKVIIKGWT
QKGSRRGVLRDSCCDLVGKFYMCNACAEHNESKPKAISVFFQGWDEDVRR
LLPIYIEESFPFVLTRKSAIHRSVIADVTDNLMHAKGFKACSEVLQQAHR
HTFHLAEAKYYSMLVHRRAEQLGSGAEDNFGSFEDADGYNGFSPSAPYLS
MVWSR*
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mRNA from alignment at H-elongata_contig16272:434..1229+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig16272.3977.1 ID=mRNA_H-elongata_contig16272.3977.1|Name=mRNA_H-elongata_contig16272.3977.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=796bp|location=Sequence derived from alignment at H-elongata_contig16272:434..1229+ (Himanthalia elongata Himel1 dioecious)
GTGCAGCCGCCGAATCCTACCATGCTTAAAACGATACGTGTCGGGGATCA CAACCTTCGGACAGTGTTTGTTTGGCTACCCGACCTCACCCACCCTTGCG GCGTACCCGGTGGACGGCTCCCGTGCCCGCGGTGCAAGACCAATCACAAG GTGATTATCAAGGGGTGGACGCAAAAAGGCTCGCGAAGAGGTGTCTTGCG GGATTCGTGCTGCGACCTGGTGGGAAAGTTCTACATGTGCAACGCGTGCG CGGAGCACAACGAGTCGAAGCCCAAGGCAAGTGCTGCATTTTGCTGTGTT GGTATCGATCTACCCTGTCATTTCACGAAAGGTTTCGAATTGACCTCCGT TCAGCTGTATCTTTTGATATTTCTTTTCTCAAACCACCTCTTCCTCGTCT CTGTACTTTCTCTTCAAACAGAATTGCAACACGCGAGTTTCGGTGTTTTT TCAGGGCTGGGATGAAGATGTGCGCAGACTGCTTCCGATTTACATTGAAG AGAGCTTCCCTTTCGTCCTGACTCGGAAGTCCGCTATACATCGCAGCGTG ATCGCCGATGTGACAGACAATTTGATGCACGCGAAGGGGTTTAAGGCTTG CAGCGAGGTCTTGCAGCAAGCACACCGGCACACGTTCCATCTCGCTGAGG CCAAGTACTACAGCATGCTGGTGCATCGGAGGGCGGAGCAGCTCGGGTCA GGAGCAGAGGACAATTTTGGGTCGTTCGAGGATGCGGACGGTTACAATGG CTTCTCCCCATCAGCTCCTTATCTGTCCATGGTGTGGTCTAGGTAA
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Coding sequence (CDS) from alignment at H-elongata_contig16272:434..1229+

>mRNA_H-elongata_contig16272.3977.1 ID=mRNA_H-elongata_contig16272.3977.1|Name=mRNA_H-elongata_contig16272.3977.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1236bp|location=Sequence derived from alignment at H-elongata_contig16272:434..1229+ (Himanthalia elongata Himel1 dioecious)
ATGCTTAAAACGATACGTGTCGGGGATCACAACCTTCGGACAGTGTTTGT
TTGGCTACCCGACCTCACCCACCCTTGCGGCGTACCCGGTGGACGGCTCC
CGTGCCCGCGGTGCAAGACCAATCACAAGGTGATTATCAAGGGGTGGACG
CAAAAAGGCTCGCGAAGAGGTGTCTTGCGGGATTCGTGCTGCGACCTGGT
GGGAAAGTTCTACATGTGCAACGCGTGCGCGGAGCACAACGAGTCGAAGC
CCAAGGCAAATGCTTAAAACGATACGTGTCGGGGATCACAACCTTCGGAC
AGTGTTTGTTTGGCTACCCGACCTCACCCACCCTTGCGGCGTACCCGGTG
GACGGCTCCCGTGCCCGCGGTGCAAGACCAATCACAAGGTGATTATCAAG
GGGTGGACGCAAAAAGGCTCGCGAAGAGGTGTCTTGCGGGATTCGTGCTG
CGACCTGGTGGGAAAGTTCTACATGTGCAACGCGTGCGCGGAGCACAACG
AGTCGAAGCCCAAGGCAATTTCGGTGTTTTTTCAGGGCTGGGATGAAGAT
GTGCGCAGACTGCTTCCGATTTACATTGAAGAGAGCTTCCCTTTCGTCCT
GACTCGGAAGTCCGCTATACATCGCAGCGTGATCGCCGATGTGACAGACA
ATTTGATGCACGCGAAGGGGTTTAAGGCTTGCAGCGAGGTCTTGCAGCAA
GCACACCGGCACACGTTCCATCTCGCTGAGGCCAAGTACTACAGCATGCT
GGTGCATCGGAGGGCGGAGCAGCTCGGGTCAGGAGCAGAGGACAATTTTG
GGTCGTTCGAGGATGCGGACGGTTACAATGGCTTCTCCCCATCAGCTCCT
TATCTGTCCATGGTGTGGTCTAGGTAATTTCGGTGTTTTTTCAGGGCTGG
GATGAAGATGTGCGCAGACTGCTTCCGATTTACATTGAAGAGAGCTTCCC
TTTCGTCCTGACTCGGAAGTCCGCTATACATCGCAGCGTGATCGCCGATG
TGACAGACAATTTGATGCACGCGAAGGGGTTTAAGGCTTGCAGCGAGGTC
TTGCAGCAAGCACACCGGCACACGTTCCATCTCGCTGAGGCCAAGTACTA
CAGCATGCTGGTGCATCGGAGGGCGGAGCAGCTCGGGTCAGGAGCAGAGG
ACAATTTTGGGTCGTTCGAGGATGCGGACGGTTACAATGGCTTCTCCCCA
TCAGCTCCTTATCTGTCCATGGTGTGGTCTAGGTAA
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