mRNA_H-elongata_contig162676.3975.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig162676.3975.1
Unique NamemRNA_H-elongata_contig162676.3975.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig162676.3975.1 vs. uniprot
Match: D8LFD9_ECTSI (UBP-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFD9_ECTSI)

HSP 1 Score: 76.6 bits (187), Expect = 8.410e-15
Identity = 32/43 (74.42%), Postives = 35/43 (81.40%), Query Frame = 1 
Query:   55 QLYCETCHITHNLWICMVCGHIGCGRYTQEHANGHFRNSRHAF 183
            +L CETC I HNLWICMVCGHIGCGRYT EHA+ HFR S H +
Sbjct:  668 ELCCETCRIAHNLWICMVCGHIGCGRYTGEHASRHFRLSGHTY 710
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BLAST of mRNA_H-elongata_contig162676.3975.1 vs. uniprot
Match: A0A835YX21_9STRA (UBP-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YX21_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 1.230e-12
Identity = 27/44 (61.36%), Postives = 31/44 (70.45%), Query Frame = 1 
Query:   52 PQLYCETCHITHNLWICMVCGHIGCGRYTQEHANGHFRNSRHAF 183
            P + CE C I HNLW+CMVCGHIGCGRYT EHA  H   + H +
Sbjct:  341 PPVACEACRIAHNLWVCMVCGHIGCGRYTAEHAKAHHAQTGHTY 384
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BLAST of mRNA_H-elongata_contig162676.3975.1 vs. uniprot
Match: A0A7J7IGV2_9RHOD (Uncharacterized protein n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7IGV2_9RHOD)

HSP 1 Score: 68.2 bits (165), Expect = 8.030e-12
Identity = 26/56 (46.43%), Postives = 36/56 (64.29%), Query Frame = 1 
Query:   28 FSSLVPSQPQLYCETCHITHNLWICMVCGHIGCGRYTQEHANGHFRNSRHAFRRDI 195
            F ++     +  CE CH+   LWIC+VCGH+GCGRY Q HA  H+R++ H F  +I
Sbjct:  469 FVAIATPPVETACEVCHVQKQLWICLVCGHVGCGRYVQHHALAHYRSTHHVFCMEI 524
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BLAST of mRNA_H-elongata_contig162676.3975.1 vs. uniprot
Match: A0A0G2H0N8_9EURO (Putative ring and ubp finger domain n=1 Tax=Phaeomoniella chlamydospora TaxID=158046 RepID=A0A0G2H0N8_9EURO)

HSP 1 Score: 66.2 bits (160), Expect = 3.700e-11
Identity = 27/51 (52.94%), Postives = 34/51 (66.67%), Query Frame = 1 
Query:   43 PSQPQLYCETCHITHNLWICMVCGHIGCGRYTQEHANGHFRNSRHAFRRDI 195
            PS   L CETCH  HNLW C++CG IGCGRY   HA  H++ + H+F  D+
Sbjct:   91 PSIEPLECETCHADHNLWQCLICGKIGCGRYDAAHAFQHYQTTSHSFAMDM 141
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BLAST of mRNA_H-elongata_contig162676.3975.1 vs. uniprot
Match: K3W6P2_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3W6P2_GLOUD)

HSP 1 Score: 66.2 bits (160), Expect = 3.800e-11
Identity = 23/40 (57.50%), Postives = 31/40 (77.50%), Query Frame = 1 
Query:   64 CETCHITHNLWICMVCGHIGCGRYTQEHANGHFRNSRHAF 183
            CE CH T +LWIC++CGH+GCGRY+ EHA  HF+ + H +
Sbjct:  305 CEVCHTTEHLWICLICGHVGCGRYSGEHAKQHFQETSHTY 344
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BLAST of mRNA_H-elongata_contig162676.3975.1 vs. uniprot
Match: Q0D041_ASPTN (Uncharacterized protein n=2 Tax=Aspergillus terreus TaxID=33178 RepID=Q0D041_ASPTN)

HSP 1 Score: 65.9 bits (159), Expect = 5.200e-11
Identity = 24/49 (48.98%), Postives = 33/49 (67.35%), Query Frame = 1 
Query:   49 QPQLYCETCHITHNLWICMVCGHIGCGRYTQEHANGHFRNSRHAFRRDI 195
            QP   C  CH   NLW+C++CGH+GCGRY   HA  H++++ HAF  D+
Sbjct:  301 QPPAECNVCHSDVNLWVCLICGHVGCGRYDGAHAFAHYKDTAHAFAMDL 349
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BLAST of mRNA_H-elongata_contig162676.3975.1 vs. uniprot
Match: A0A2B7Z3A1_9EURO (Uncharacterized protein n=1 Tax=Polytolypa hystricis UAMH7299 TaxID=1447883 RepID=A0A2B7Z3A1_9EURO)

HSP 1 Score: 65.9 bits (159), Expect = 5.240e-11
Identity = 23/44 (52.27%), Postives = 31/44 (70.45%), Query Frame = 1 
Query:   64 CETCHITHNLWICMVCGHIGCGRYTQEHANGHFRNSRHAFRRDI 195
            C  CH   NLW+C++CGH+GCGRY + HA  HF+ + HAF  D+
Sbjct:  520 CNVCHSEENLWLCLICGHVGCGRYDEAHAFAHFKQTSHAFAMDL 563
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BLAST of mRNA_H-elongata_contig162676.3975.1 vs. uniprot
Match: A0A1V9X330_9ACAR (BRCA1-associated protein-like n=1 Tax=Tropilaelaps mercedesae TaxID=418985 RepID=A0A1V9X330_9ACAR)

HSP 1 Score: 65.1 bits (157), Expect = 9.730e-11
Identity = 25/40 (62.50%), Postives = 29/40 (72.50%), Query Frame = 1 
Query:   64 CETCHITHNLWICMVCGHIGCGRYTQEHANGHFRNSRHAF 183
            C+TC  T NLWIC+VCGHIGCGRY   HAN H+  + H F
Sbjct:  323 CQTCGATENLWICLVCGHIGCGRYVAGHANTHYSRTEHTF 362
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BLAST of mRNA_H-elongata_contig162676.3975.1 vs. uniprot
Match: A0A662YFP2_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662YFP2_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 1.270e-10
Identity = 22/40 (55.00%), Postives = 31/40 (77.50%), Query Frame = 1 
Query:   64 CETCHITHNLWICMVCGHIGCGRYTQEHANGHFRNSRHAF 183
            CE CH T +LWIC++CGH+GCGRY+ EHA  H++ + H +
Sbjct:  282 CEVCHTTEHLWICLICGHVGCGRYSGEHAKQHYQETLHTY 321
[Close]
BLAST of mRNA_H-elongata_contig162676.3975.1 vs. uniprot
Match: W0TD91_KLUMD (RING finger protein ETP1 n=1 Tax=Kluyveromyces marxianus (strain DMKU3-1042 / BCC 29191 / NBRC 104275) TaxID=1003335 RepID=W0TD91_KLUMD)

HSP 1 Score: 64.7 bits (156), Expect = 1.320e-10
Identity = 24/50 (48.00%), Postives = 34/50 (68.00%), Query Frame = 1 
Query:   46 SQPQLYCETCHITHNLWICMVCGHIGCGRYTQEHANGHFRNSRHAFRRDI 195
            +QPQ  C  C+  +NLWIC++CGH+GCGRY  +HA  H+  + H F  D+
Sbjct:  273 NQPQPTCRKCNEKNNLWICLICGHLGCGRYNSQHAIRHYEETSHCFAMDL 322
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig162676.3975.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LFD9_ECTSI8.410e-1574.42UBP-type domain-containing protein n=2 Tax=Ectocar... [more]
A0A835YX21_9STRA1.230e-1261.36UBP-type domain-containing protein n=1 Tax=Tribone... [more]
A0A7J7IGV2_9RHOD8.030e-1246.43Uncharacterized protein n=1 Tax=Cyanidiococcus yan... [more]
A0A0G2H0N8_9EURO3.700e-1152.94Putative ring and ubp finger domain n=1 Tax=Phaeom... [more]
K3W6P2_GLOUD3.800e-1157.50Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
Q0D041_ASPTN5.200e-1148.98Uncharacterized protein n=2 Tax=Aspergillus terreu... [more]
A0A2B7Z3A1_9EURO5.240e-1152.27Uncharacterized protein n=1 Tax=Polytolypa hystric... [more]
A0A1V9X330_9ACAR9.730e-1162.50BRCA1-associated protein-like n=1 Tax=Tropilaelaps... [more]
A0A662YFP2_9STRA1.270e-1055.00Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]
W0TD91_KLUMD1.320e-1048.00RING finger protein ETP1 n=1 Tax=Kluyveromyces mar... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig162676contigH-elongata_contig162676:224..418 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score77.4
Seed ortholog evalue2.6e-12
Seed eggNOG ortholog2880.D8LFD9
KEGG koko:K00413,ko:K10632,ko:K11407
KEGG Pathwayko00190,ko01100,ko02020,ko04014,ko04260,ko04714,ko04932,ko05010,ko05012,ko05016,ko05034,ko05165,ko05203,map00190,map01100,map02020,map04014,map04260,map04714,map04932,map05010,map05012,map05016,map05034,map05165,map05203
KEGG ModuleM00151,M00152
GOsGO:0000151,GO:0000165,GO:0003674,GO:0003824,GO:0004842,GO:0005048,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005737,GO:0005829,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0007154,GO:0007165,GO:0007264,GO:0007265,GO:0008139,GO:0008150,GO:0008152,GO:0008270,GO:0009636,GO:0009966,GO:0009968,GO:0009987,GO:0010033,GO:0010646,GO:0010648,GO:0012505,GO:0016020,GO:0016310,GO:0016567,GO:0016740,GO:0019538,GO:0019787,GO:0023014,GO:0023051,GO:0023052,GO:0023057,GO:0031090,GO:0031965,GO:0031967,GO:0031975,GO:0032182,GO:0032446,GO:0032991,GO:0033218,GO:0035556,GO:0036211,GO:0042221,GO:0042277,GO:0042493,GO:0042802,GO:0043130,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045471,GO:0046677,GO:0046872,GO:0046914,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0061630,GO:0061659,GO:0065007,GO:0070647,GO:0071704,GO:0097305,GO:0140096,GO:1901564,GO:1901700,GO:1902494,GO:1990234
EggNOG free text desc.nuclear localization sequence binding
EggNOG OGsKOG0804@1,KOG0804@2759
EC2.3.2.27,3.5.1.98
COG Functional cat.GO
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01009,ko03019,ko03036,ko04121,ko04131
Hectar predicted targeting categoryother localisation
Exons1
Model size195
Cds size183
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929951.5051265-CDS-H-elongata_contig162676:223..4061622929951.5051265-CDS-H-elongata_contig162676:223..406Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig162676 224..406 -
1691679220.6620884-CDS-H-elongata_contig162676:223..4061691679220.6620884-CDS-H-elongata_contig162676:223..406Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig162676 224..406 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929951.5316298-UTR-H-elongata_contig162676:406..4181622929951.5316298-UTR-H-elongata_contig162676:406..418Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig162676 407..418 -
1691679220.6746027-UTR-H-elongata_contig162676:406..4181691679220.6746027-UTR-H-elongata_contig162676:406..418Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig162676 407..418 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig162676.3975.1prot_H-elongata_contig162676.3975.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig162676 224..406 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig162676.3975.1

>prot_H-elongata_contig162676.3975.1 ID=prot_H-elongata_contig162676.3975.1|Name=mRNA_H-elongata_contig162676.3975.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=61bp
MLSLPFSSLVPSQPQLYCETCHITHNLWICMVCGHIGCGRYTQEHANGHF
RNSRHAFRRDI
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mRNA from alignment at H-elongata_contig162676:224..418-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig162676.3975.1 ID=mRNA_H-elongata_contig162676.3975.1|Name=mRNA_H-elongata_contig162676.3975.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=195bp|location=Sequence derived from alignment at H-elongata_contig162676:224..418- (Himanthalia elongata Himel1 dioecious)
GCCGCGCGCCCGATGCTTTCCCTCCCTTTTTCGTCTCTTGTACCATCACA
GCCTCAGCTGTACTGCGAGACGTGCCACATCACCCACAACCTCTGGATCT
GTATGGTGTGTGGACACATAGGCTGCGGGCGTTATACACAGGAACACGCC
AACGGGCACTTTCGCAACTCCCGACACGCGTTCAGGCGAGATATA
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Coding sequence (CDS) from alignment at H-elongata_contig162676:224..418-

>mRNA_H-elongata_contig162676.3975.1 ID=mRNA_H-elongata_contig162676.3975.1|Name=mRNA_H-elongata_contig162676.3975.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=366bp|location=Sequence derived from alignment at H-elongata_contig162676:224..418- (Himanthalia elongata Himel1 dioecious)
ATGCTTTCCCTCCCTTTTTCGTCTCTTGTACCATCACAGCCTCAGCTGTA
CTGCGAGACGTGCCACATCACCCACAACCTCTGGATCTGTATGGTGTGTG
GACACATAGGCTGCGGGCGTTATACACAGGAACACGCCAACGGGCACTTT
CGCAACTCCCGACACGCGTTCAGGCGAGATATAATGCTTTCCCTCCCTTT
TTCGTCTCTTGTACCATCACAGCCTCAGCTGTACTGCGAGACGTGCCACA
TCACCCACAACCTCTGGATCTGTATGGTGTGTGGACACATAGGCTGCGGG
CGTTATACACAGGAACACGCCAACGGGCACTTTCGCAACTCCCGACACGC
GTTCAGGCGAGATATA
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