mRNA_H-elongata_contig162561.3971.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig162561.3971.1
Unique NamemRNA_H-elongata_contig162561.3971.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig162561.3971.1 vs. uniprot
Match: D7FKF6_ECTSI (VASt domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKF6_ECTSI)

HSP 1 Score: 84.7 bits (208), Expect = 2.630e-17
Identity = 38/40 (95.00%), Postives = 40/40 (100.00%), Query Frame = 1 
Query:  127 DFSCAVESRILLHGRMYVTDTFVCFYSNLFGFEKMIKIPF 246
            DFSCAVESRILLHGRMYVT+TFVCFYSNLFGFEK+IKIPF
Sbjct:   36 DFSCAVESRILLHGRMYVTNTFVCFYSNLFGFEKIIKIPF 75
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BLAST of mRNA_H-elongata_contig162561.3971.1 vs. uniprot
Match: A0A6H5L0Q2_9PHAE (VASt domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0Q2_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 2.640e-17
Identity = 38/40 (95.00%), Postives = 40/40 (100.00%), Query Frame = 1 
Query:  127 DFSCAVESRILLHGRMYVTDTFVCFYSNLFGFEKMIKIPF 246
            DFSCAVESRILLHGRMYVT+TFVCFYSNLFGFEK+IKIPF
Sbjct:   75 DFSCAVESRILLHGRMYVTNTFVCFYSNLFGFEKIIKIPF 114
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BLAST of mRNA_H-elongata_contig162561.3971.1 vs. uniprot
Match: F0Y4G3_AURAN (GRAM domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y4G3_AURAN)

HSP 1 Score: 75.9 bits (185), Expect = 2.640e-16
Identity = 31/40 (77.50%), Postives = 37/40 (92.50%), Query Frame = 1 
Query:  127 DFSCAVESRILLHGRMYVTDTFVCFYSNLFGFEKMIKIPF 246
            DFSCA+E +ILLHGR+YVT+ F+CFYSNLFGFEK IKIP+
Sbjct:    2 DFSCAIERKILLHGRLYVTERFICFYSNLFGFEKKIKIPY 41
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BLAST of mRNA_H-elongata_contig162561.3971.1 vs. uniprot
Match: A0A7S2STC3_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2STC3_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 2.730e-15
Identity = 34/40 (85.00%), Postives = 37/40 (92.50%), Query Frame = 1 
Query:  127 DFSCAVESRILLHGRMYVTDTFVCFYSNLFGFEKMIKIPF 246
            DFSCAVE +ILLHGRMYVTD F+CFYSNLFGFEK IKIP+
Sbjct:   44 DFSCAVERKILLHGRMYVTDKFICFYSNLFGFEKKIKIPY 83
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BLAST of mRNA_H-elongata_contig162561.3971.1 vs. uniprot
Match: A0A482S830_9ARCH (GRAM domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S830_9ARCH)

HSP 1 Score: 72.4 bits (176), Expect = 4.180e-15
Identity = 30/42 (71.43%), Postives = 36/42 (85.71%), Query Frame = 1 
Query:  121 LADFSCAVESRILLHGRMYVTDTFVCFYSNLFGFEKMIKIPF 246
            L DFSCAVES +LLHGRMY++  F+CFYSNLFG EK I+IP+
Sbjct:    4 LLDFSCAVESTVLLHGRMYISTRFICFYSNLFGLEKKIRIPY 45
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BLAST of mRNA_H-elongata_contig162561.3971.1 vs. uniprot
Match: W7TDU9_9STRA (Gram domain-containing protein 1a n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TDU9_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 3.080e-14
Identity = 33/40 (82.50%), Postives = 36/40 (90.00%), Query Frame = 1 
Query:  127 DFSCAVESRILLHGRMYVTDTFVCFYSNLFGFEKMIKIPF 246
            D SCAVES+ILLHGR+Y+TD FVCFYSN FGFEK IKIPF
Sbjct:  119 DASCAVESKILLHGRIYITDKFVCFYSNFFGFEKKIKIPF 158
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BLAST of mRNA_H-elongata_contig162561.3971.1 vs. uniprot
Match: A0A8J2ST97_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2ST97_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 3.240e-14
Identity = 31/40 (77.50%), Postives = 37/40 (92.50%), Query Frame = 1 
Query:  127 DFSCAVESRILLHGRMYVTDTFVCFYSNLFGFEKMIKIPF 246
            DFSCA+E +ILLHGR+YVT+ F+CFYSNLFGFEK IKIP+
Sbjct:   63 DFSCAIERKILLHGRLYVTERFICFYSNLFGFEKKIKIPY 102
[Close]
BLAST of mRNA_H-elongata_contig162561.3971.1 vs. uniprot
Match: A0A7S3NLX8_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NLX8_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 3.390e-14
Identity = 31/40 (77.50%), Postives = 37/40 (92.50%), Query Frame = 1 
Query:  127 DFSCAVESRILLHGRMYVTDTFVCFYSNLFGFEKMIKIPF 246
            DFSCA+E +ILLHGR+YVT+ F+CFYSNLFGFEK IKIP+
Sbjct:  167 DFSCAIERKILLHGRLYVTERFICFYSNLFGFEKKIKIPY 206
[Close]
BLAST of mRNA_H-elongata_contig162561.3971.1 vs. uniprot
Match: A0A836CDE2_9STRA (GRAM domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDE2_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 3.420e-13
Identity = 27/40 (67.50%), Postives = 36/40 (90.00%), Query Frame = 1 
Query:  127 DFSCAVESRILLHGRMYVTDTFVCFYSNLFGFEKMIKIPF 246
            DFSCAV+SR+L+HGR+Y+T   + FYSN+FGFEK+I+IPF
Sbjct:    2 DFSCAVQSRVLMHGRLYITPGHLLFYSNIFGFEKIIRIPF 41
[Close]
BLAST of mRNA_H-elongata_contig162561.3971.1 vs. uniprot
Match: A0A7S1U683_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U683_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 3.180e-12
Identity = 27/42 (64.29%), Postives = 35/42 (83.33%), Query Frame = 1 
Query:  121 LADFSCAVESRILLHGRMYVTDTFVCFYSNLFGFEKMIKIPF 246
            L+DFSC+VES++ LHG MYVT  F+CFYSN FG+EK I +P+
Sbjct:   41 LSDFSCSVESKMTLHGHMYVTTRFICFYSNFFGYEKKILLPY 82
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig162561.3971.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FKF6_ECTSI2.630e-1795.00VASt domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5L0Q2_9PHAE2.640e-1795.00VASt domain-containing protein (Fragment) n=1 Tax=... [more]
F0Y4G3_AURAN2.640e-1677.50GRAM domain-containing protein (Fragment) n=1 Tax=... [more]
A0A7S2STC3_9STRA2.730e-1585.00Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A482S830_9ARCH4.180e-1571.43GRAM domain-containing protein n=1 Tax=archaeon Ta... [more]
W7TDU9_9STRA3.080e-1482.50Gram domain-containing protein 1a n=1 Tax=Nannochl... [more]
A0A8J2ST97_9STRA3.240e-1477.50Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S3NLX8_9STRA3.390e-1477.50Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A836CDE2_9STRA3.420e-1367.50GRAM domain-containing protein (Fragment) n=1 Tax=... [more]
A0A7S1U683_9STRA3.180e-1264.29Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig162561contigH-elongata_contig162561:473..724 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score84.7
Seed ortholog evalue2.2e-14
Seed eggNOG ortholog2880.D7FKF6
Preferred nameVAD1
GOsGO:0001101,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0006950,GO:0006952,GO:0008150,GO:0009605,GO:0009607,GO:0009617,GO:0009719,GO:0009723,GO:0009725,GO:0009751,GO:0010033,GO:0010941,GO:0012505,GO:0014070,GO:0042221,GO:0042493,GO:0042742,GO:0043067,GO:0043069,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0046677,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051704,GO:0051707,GO:0060548,GO:0065007,GO:0098542,GO:1901700
EggNOG free text desc.intracellular sterol transport
EggNOG OGsKOG1032@1,KOG1032@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionGRAM domain
Ec32 orthologEc-12_002240.1
Exons1
Model size252
Cds size252
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929951.0915449-CDS-H-elongata_contig162561:472..7241622929951.0915449-CDS-H-elongata_contig162561:472..724Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig162561 473..724 +
1691679220.4927695-CDS-H-elongata_contig162561:472..7241691679220.4927695-CDS-H-elongata_contig162561:472..724Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig162561 473..724 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig162561.3971.1prot_H-elongata_contig162561.3971.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig162561 473..724 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig162561.3971.1

>prot_H-elongata_contig162561.3971.1 ID=prot_H-elongata_contig162561.3971.1|Name=mRNA_H-elongata_contig162561.3971.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=84bp
PRGSNYIEILSLYQNPEVEEKRGPTNQLQAKSRRASSLDRLADFSCAVES
RILLHGRMYVTDTFVCFYSNLFGFEKMIKIPFW*
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mRNA from alignment at H-elongata_contig162561:473..724+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig162561.3971.1 ID=mRNA_H-elongata_contig162561.3971.1|Name=mRNA_H-elongata_contig162561.3971.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=252bp|location=Sequence derived from alignment at H-elongata_contig162561:473..724+ (Himanthalia elongata Himel1 dioecious)
CCTCGTGGGAGCAACTACATTGAGATCTTGAGCCTTTATCAGAACCCTGA
GGTAGAAGAAAAGCGGGGCCCGACGAATCAACTCCAAGCGAAATCCCGCC
GCGCCTCATCGCTGGACCGCCTGGCAGATTTCTCGTGCGCTGTGGAGAGC
CGCATCCTCCTCCACGGCCGAATGTACGTGACCGACACTTTCGTCTGTTT
CTACAGCAACCTCTTCGGCTTTGAAAAAATGATCAAGATTCCCTTTTGGT
GA
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Coding sequence (CDS) from alignment at H-elongata_contig162561:473..724+

>mRNA_H-elongata_contig162561.3971.1 ID=mRNA_H-elongata_contig162561.3971.1|Name=mRNA_H-elongata_contig162561.3971.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=504bp|location=Sequence derived from alignment at H-elongata_contig162561:473..724+ (Himanthalia elongata Himel1 dioecious)
CCTCGTGGGAGCAACTACATTGAGATCTTGAGCCTTTATCAGAACCCTGA
GGTAGAAGAAAAGCGGGGCCCGACGAATCAACTCCAAGCGAAATCCCGCC
GCGCCTCATCGCTGGACCGCCTGGCAGATTTCTCGTGCGCTGTGGAGAGC
CGCATCCTCCTCCACGGCCGAATGTACGTGACCGACACTTTCGTCTGTTT
CTACAGCAACCTCTTCGGCTTTGAAAAAATGATCAAGATTCCCTTTTGGT
GACCTCGTGGGAGCAACTACATTGAGATCTTGAGCCTTTATCAGAACCCT
GAGGTAGAAGAAAAGCGGGGCCCGACGAATCAACTCCAAGCGAAATCCCG
CCGCGCCTCATCGCTGGACCGCCTGGCAGATTTCTCGTGCGCTGTGGAGA
GCCGCATCCTCCTCCACGGCCGAATGTACGTGACCGACACTTTCGTCTGT
TTCTACAGCAACCTCTTCGGCTTTGAAAAAATGATCAAGATTCCCTTTTG
GTGA
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