mRNA_H-elongata_contig162555.3970.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig162555.3970.1
Unique NamemRNA_H-elongata_contig162555.3970.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig162555.3970.1 vs. uniprot
Match: D7FWL0_ECTSI (Adenylosuccinate synthetase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWL0_ECTSI)

HSP 1 Score: 125 bits (315), Expect = 1.260e-32
Identity = 57/66 (86.36%), Postives = 63/66 (95.45%), Query Frame = 1 
Query:    1 VDILSQNYAICARVAGGSNAGHTIVVGDKIFKFHLLPSGMLHPSTMGVIGNGVVVHVPTLIREIQA 198
            VDILSQNY ICARVAGGSNAGHTIVVGDK FKFHLLPSGMLHP TMGVIGNGVVVH+PTL++E+++
Sbjct:   78 VDILSQNYNICARVAGGSNAGHTIVVGDKTFKFHLLPSGMLHPGTMGVIGNGVVVHIPTLLKEMKS 143
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BLAST of mRNA_H-elongata_contig162555.3970.1 vs. uniprot
Match: A0A836CHU9_9STRA (Adenylosuccinate synthetase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHU9_9STRA)

HSP 1 Score: 108 bits (270), Expect = 2.010e-26
Identity = 49/65 (75.38%), Postives = 58/65 (89.23%), Query Frame = 1 
Query:    1 VDILSQNYAICARVAGGSNAGHTIVVGDKIFKFHLLPSGMLHPSTMGVIGNGVVVHVPTLIREIQ 195
            VDIL+Q Y +CARVAGGSNAGHTIVV  K FKFHLLPSGML+P++ GVIGNGVVVH+PTL+ E++
Sbjct:   31 VDILAQRYDVCARVAGGSNAGHTIVVDGKKFKFHLLPSGMLNPNSTGVIGNGVVVHIPTLLEEMR 95
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BLAST of mRNA_H-elongata_contig162555.3970.1 vs. uniprot
Match: A0A7S2Y1Y3_9STRA (Adenylosuccinate synthetase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y1Y3_9STRA)

HSP 1 Score: 102 bits (255), Expect = 4.040e-24
Identity = 44/66 (66.67%), Postives = 58/66 (87.88%), Query Frame = 1 
Query:    1 VDILSQNYAICARVAGGSNAGHTIVVGDKIFKFHLLPSGMLHPSTMGVIGNGVVVHVPTLIREIQA 198
            VD+L+ +Y+ICARVAGGSNAGHTIVV    +KFHL+PSGML+P  + V+GNGVVVHVPT+++E++A
Sbjct:   99 VDLLTHDYSICARVAGGSNAGHTIVVDGVTYKFHLIPSGMLNPEAVCVVGNGVVVHVPTMLKELEA 164
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BLAST of mRNA_H-elongata_contig162555.3970.1 vs. uniprot
Match: A0A812S4T5_SYMMI (Adenylosuccinate synthetase n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812S4T5_SYMMI)

HSP 1 Score: 102 bits (255), Expect = 4.150e-24
Identity = 46/65 (70.77%), Postives = 56/65 (86.15%), Query Frame = 1 
Query:    1 VDILSQNYAICARVAGGSNAGHTIVVGDKIFKFHLLPSGMLHPSTMGVIGNGVVVHVPTLIREIQ 195
            VD+LS +Y IC RVAGGSNAGHTIVV  K +KFHL+PSG+LHP+T  VIGNGVVVHVP+L+ E++
Sbjct:  103 VDVLSGSYDICCRVAGGSNAGHTIVVKGKTYKFHLIPSGILHPTTTCVIGNGVVVHVPSLLEELR 167
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BLAST of mRNA_H-elongata_contig162555.3970.1 vs. uniprot
Match: A0A1E7FLI0_9STRA (Adenylosuccinate synthetase n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FLI0_9STRA)

HSP 1 Score: 100 bits (249), Expect = 2.230e-23
Identity = 42/65 (64.62%), Postives = 55/65 (84.62%), Query Frame = 1 
Query:    1 VDILSQNYAICARVAGGSNAGHTIVVGDKIFKFHLLPSGMLHPSTMGVIGNGVVVHVPTLIREIQ 195
            VD+LSQ Y +CARVAGGSNAGHTIVV D  +KFHLLPSG+L+P  +G++GNGVV+H+P+ + E+ 
Sbjct:   49 VDMLSQEYDVCARVAGGSNAGHTIVVNDIKYKFHLLPSGILNPEAIGIVGNGVVIHLPSFLTELD 113
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BLAST of mRNA_H-elongata_contig162555.3970.1 vs. uniprot
Match: A0A7S2XU40_9STRA (Adenylosuccinate synthetase (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XU40_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 2.620e-23
Identity = 46/66 (69.70%), Postives = 54/66 (81.82%), Query Frame = 1 
Query:    1 VDILSQNYAICARVAGGSNAGHTIVVGDKIFKFHLLPSGMLHPSTMGVIGNGVVVHVPTLIREIQA 198
            VDILSQ Y +CARVAGGSNAGHTIVVG   +KFHLLPSG+L+   M VIGNGVVVH+P+ + EI +
Sbjct:  114 VDILSQEYDVCARVAGGSNAGHTIVVGGTKYKFHLLPSGILNEKAMCVIGNGVVVHLPSFLNEIDS 179
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BLAST of mRNA_H-elongata_contig162555.3970.1 vs. uniprot
Match: A0A448ZEJ2_9STRA (Adenylosuccinate synthetase n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZEJ2_9STRA)

HSP 1 Score: 100 bits (249), Expect = 3.380e-23
Identity = 42/65 (64.62%), Postives = 56/65 (86.15%), Query Frame = 1 
Query:    1 VDILSQNYAICARVAGGSNAGHTIVVGDKIFKFHLLPSGMLHPSTMGVIGNGVVVHVPTLIREIQ 195
            VD+LSQ Y +CARVAGGSNAGHTIVV    +KFHLLPSG+L+P  +G++GNGVV+H+P+ ++EI+
Sbjct:  183 VDMLSQEYDVCARVAGGSNAGHTIVVDGVKYKFHLLPSGILNPDAIGIVGNGVVIHLPSFLKEIE 247
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BLAST of mRNA_H-elongata_contig162555.3970.1 vs. uniprot
Match: PURA_PHATC (Adenylosuccinate synthetase n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=PURA_PHATC)

HSP 1 Score: 99.4 bits (246), Expect = 7.730e-23
Identity = 43/66 (65.15%), Postives = 56/66 (84.85%), Query Frame = 1 
Query:    1 VDILSQNYAICARVAGGSNAGHTIVVGDKIFKFHLLPSGMLHPSTMGVIGNGVVVHVPTLIREIQA 198
            VD+LSQ+Y +CARVAGGSNAGHTIVV  K +KFHLLPSG+L+P+   VIGNGVV+H+P+ + E+ +
Sbjct:  110 VDLLSQDYDVCARVAGGSNAGHTIVVQGKKYKFHLLPSGVLNPNATCVIGNGVVIHIPSFLNELDS 175
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BLAST of mRNA_H-elongata_contig162555.3970.1 vs. uniprot
Match: A0A7S4AP10_9STRA (Adenylosuccinate synthetase n=2 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4AP10_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 8.790e-23
Identity = 44/65 (67.69%), Postives = 54/65 (83.08%), Query Frame = 1 
Query:    1 VDILSQNYAICARVAGGSNAGHTIVVGDKIFKFHLLPSGMLHPSTMGVIGNGVVVHVPTLIREIQ 195
            VD+LSQ Y +CARVAGGSNAGHTIVV    +KFHLLPSG+L+P  +GV+GNGVVVH+P+ + EI 
Sbjct:  203 VDMLSQEYDVCARVAGGSNAGHTIVVDGVKYKFHLLPSGILNPDAIGVVGNGVVVHLPSFLTEID 267
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BLAST of mRNA_H-elongata_contig162555.3970.1 vs. uniprot
Match: A0A7S0HL16_9CRYP (Adenylosuccinate synthetase (Fragment) n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0HL16_9CRYP)

HSP 1 Score: 91.7 bits (226), Expect = 1.320e-22
Identity = 40/65 (61.54%), Postives = 51/65 (78.46%), Query Frame = 1 
Query:    1 VDILSQNYAICARVAGGSNAGHTIVVGDKIFKFHLLPSGMLHPSTMGVIGNGVVVHVPTLIREIQ 195
            VD+L ++  I AR  GGSNAGHTI VG  ++KFHLLPSG++HP+T  VIGNGVVVH+P+   EI+
Sbjct:   20 VDVLCRDMDIVARCQGGSNAGHTIKVGKSVYKFHLLPSGLVHPNTKCVIGNGVVVHIPSFFNEIE 84
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig162555.3970.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FWL0_ECTSI1.260e-3286.36Adenylosuccinate synthetase n=2 Tax=Ectocarpus Tax... [more]
A0A836CHU9_9STRA2.010e-2675.38Adenylosuccinate synthetase n=1 Tax=Tribonema minu... [more]
A0A7S2Y1Y3_9STRA4.040e-2466.67Adenylosuccinate synthetase n=1 Tax=Fibrocapsa jap... [more]
A0A812S4T5_SYMMI4.150e-2470.77Adenylosuccinate synthetase n=1 Tax=Symbiodinium m... [more]
A0A1E7FLI0_9STRA2.230e-2364.62Adenylosuccinate synthetase n=1 Tax=Fragilariopsis... [more]
A0A7S2XU40_9STRA2.620e-2369.70Adenylosuccinate synthetase (Fragment) n=1 Tax=Att... [more]
A0A448ZEJ2_9STRA3.380e-2364.62Adenylosuccinate synthetase n=1 Tax=Pseudo-nitzsch... [more]
PURA_PHATC7.730e-2365.15Adenylosuccinate synthetase n=2 Tax=Phaeodactylum ... [more]
A0A7S4AP10_9STRA8.790e-2367.69Adenylosuccinate synthetase n=2 Tax=Pseudo-nitzsch... [more]
A0A7S0HL16_9CRYP1.320e-2261.54Adenylosuccinate synthetase (Fragment) n=1 Tax=Han... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig162555contigH-elongata_contig162555:904..1101 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score124.4
Seed ortholog evalue2e-26
Seed eggNOG ortholog2880.D7FWL0
Preferred nameADSS
KEGG rclassRC00458,RC00459
KEGG koko:K01939
KEGG ReactionR01135
KEGG Pathwayko00230,ko00250,ko01100,map00230,map00250,map01100
KEGG ModuleM00049
GOsGO:0000166,GO:0001882,GO:0001883,GO:0002376,GO:0003674,GO:0003676,GO:0003677,GO:0003688,GO:0003690,GO:0003779,GO:0003824,GO:0003924,GO:0004019,GO:0005488,GO:0005515,GO:0005525,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006082,GO:0006106,GO:0006139,GO:0006163,GO:0006164,GO:0006167,GO:0006520,GO:0006531,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0007275,GO:0007517,GO:0007519,GO:0008092,GO:0008150,GO:0008152,GO:0009058,GO:0009066,GO:0009116,GO:0009117,GO:0009119,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009163,GO:0009165,GO:0009167,GO:0009168,GO:0009259,GO:0009260,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009888,GO:0009987,GO:0010035,GO:0010038,GO:0014706,GO:0014902,GO:0014904,GO:0016020,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016874,GO:0016879,GO:0017076,GO:0017111,GO:0017144,GO:0018130,GO:0019001,GO:0019438,GO:0019637,GO:0019693,GO:0019725,GO:0019752,GO:0030154,GO:0032501,GO:0032502,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0034404,GO:0034641,GO:0034654,GO:0035639,GO:0036094,GO:0042221,GO:0042278,GO:0042301,GO:0042451,GO:0042455,GO:0042592,GO:0042692,GO:0042802,GO:0042803,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043565,GO:0043648,GO:0044208,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0044877,GO:0046033,GO:0046040,GO:0046085,GO:0046086,GO:0046128,GO:0046129,GO:0046390,GO:0046483,GO:0046686,GO:0046716,GO:0046983,GO:0048046,GO:0048468,GO:0048513,GO:0048731,GO:0048741,GO:0048747,GO:0048856,GO:0048869,GO:0050896,GO:0051015,GO:0051146,GO:0051716,GO:0055001,GO:0055002,GO:0055086,GO:0060249,GO:0060537,GO:0060538,GO:0061061,GO:0061483,GO:0065007,GO:0065008,GO:0070887,GO:0071241,GO:0071248,GO:0071276,GO:0071704,GO:0071944,GO:0072521,GO:0072522,GO:0090407,GO:0097159,GO:0097367,GO:1901135,GO:1901137,GO:1901265,GO:1901293,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901657,GO:1901659,GO:1990837
EggNOG free text desc.adenylosuccinate synthase activity
EggNOG OGsCOG0104@1,KOG1355@2759
EC6.3.4.4
COG Functional cat.F
BiGG ReactioniRC1080.CRv4_Au5_s17_g7726_t1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAdenylosuccinate synthetase
Ec32 orthologEc-11_002310.1
Exons1
Model size198
Cds size198
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929951.045252-CDS-H-elongata_contig162555:903..11011622929951.045252-CDS-H-elongata_contig162555:903..1101Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig162555 904..1101 +
1691679220.4756167-CDS-H-elongata_contig162555:903..11011691679220.4756167-CDS-H-elongata_contig162555:903..1101Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig162555 904..1101 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig162555.3970.1prot_H-elongata_contig162555.3970.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig162555 904..1101 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig162555.3970.1

>prot_H-elongata_contig162555.3970.1 ID=prot_H-elongata_contig162555.3970.1|Name=mRNA_H-elongata_contig162555.3970.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=66bp
VDILSQNYAICARVAGGSNAGHTIVVGDKIFKFHLLPSGMLHPSTMGVIG
NGVVVHVPTLIREIQA
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mRNA from alignment at H-elongata_contig162555:904..1101+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig162555.3970.1 ID=mRNA_H-elongata_contig162555.3970.1|Name=mRNA_H-elongata_contig162555.3970.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=198bp|location=Sequence derived from alignment at H-elongata_contig162555:904..1101+ (Himanthalia elongata Himel1 dioecious)
GTGGACATACTTTCCCAGAACTACGCAATCTGCGCTCGCGTGGCGGGGGG
ATCGAACGCGGGCCACACGATCGTGGTCGGGGACAAGATTTTCAAGTTCC
ACCTTTTACCCTCGGGCATGCTGCATCCCTCTACCATGGGCGTCATCGGA
AACGGCGTCGTGGTGCACGTCCCGACTCTCATCAGGGAGATCCAGGCA
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Coding sequence (CDS) from alignment at H-elongata_contig162555:904..1101+

>mRNA_H-elongata_contig162555.3970.1 ID=mRNA_H-elongata_contig162555.3970.1|Name=mRNA_H-elongata_contig162555.3970.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=396bp|location=Sequence derived from alignment at H-elongata_contig162555:904..1101+ (Himanthalia elongata Himel1 dioecious)
GTGGACATACTTTCCCAGAACTACGCAATCTGCGCTCGCGTGGCGGGGGG
ATCGAACGCGGGCCACACGATCGTGGTCGGGGACAAGATTTTCAAGTTCC
ACCTTTTACCCTCGGGCATGCTGCATCCCTCTACCATGGGCGTCATCGGA
AACGGCGTCGTGGTGCACGTCCCGACTCTCATCAGGGAGATCCAGGCAGT
GGACATACTTTCCCAGAACTACGCAATCTGCGCTCGCGTGGCGGGGGGAT
CGAACGCGGGCCACACGATCGTGGTCGGGGACAAGATTTTCAAGTTCCAC
CTTTTACCCTCGGGCATGCTGCATCCCTCTACCATGGGCGTCATCGGAAA
CGGCGTCGTGGTGCACGTCCCGACTCTCATCAGGGAGATCCAGGCA
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