mRNA_H-elongata_contig16242.3965.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig16242.3965.1 vs. uniprot
Match: D7FPJ4_ECTSI (Vacuolar sorting receptor, putative (ISS) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPJ4_ECTSI) HSP 1 Score: 114 bits (284), Expect = 3.750e-30 Identity = 57/99 (57.58%), Postives = 73/99 (73.74%), Query Frame = 1
Query: 127 IVLVDRGEVSIIEKVLKTQTAGAKGVIVVDNGSCGQEFEYCG----VQDGGFSREDGTHAWTGVKIPVVLVSEAEGQRLKGAMRLRTVVFERLGEQLVE 411
+VL +RGEV ++EK+LK QTAGA GVIVVDNG C CG +DGGF++ DG HAW+GVKIP V+VS A+G+R +G M L+ +V E LGEQLV+
Sbjct: 5 VVLFERGEVPVVEKILKAQTAGAVGVIVVDNGGCDDGLVDCGRLGGARDGGFAKRDGVHAWSGVKIPAVMVSAADGERFRGMMLLQKIVVEGLGEQLVQ 103
BLAST of mRNA_H-elongata_contig16242.3965.1 vs. uniprot
Match: A0A482SJ43_9ARCH (PA domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SJ43_9ARCH) HSP 1 Score: 112 bits (281), Expect = 2.330e-28 Identity = 57/138 (41.30%), Postives = 87/138 (63.04%), Query Frame = 1
Query: 1 SIVPGLAPYHGLRDFRVEGDVAYAVPNKCQSDIL-NVKEIIGRIVLVDRGEVSIIEKVLKTQTAGAKGVIVVDNGSCGQEFEYCG-----VQDGGFSREDGTHAWTGVKIPVVLVSEAEGQRLKGAMRLRTVVFERLG 396
SI+P L +G+ ++ V G++ Y VPN + L N ++ RI VDRGE+S+++KVLK Q A A GV++ D+GSC ++F YCG +Q+GGF+ D +W V+IPVV+V+ RL+ AM +++V LG
Sbjct: 56 SILPSLNAKYGVDEYSVTGELVYCVPNYAEGPFLANDHQLSDRIAFVDRGEISLLDKVLKIQEANALGVVIADDGSCYEDFHYCGPRAGSLQEGGFAAYDNEQSWLAVEIPVVMVTSTNADRLRDAMGIKSVYIPGLG 193
BLAST of mRNA_H-elongata_contig16242.3965.1 vs. uniprot
Match: A0A6A5AAA1_9STRA (PA domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5AAA1_9STRA) HSP 1 Score: 108 bits (270), Expect = 5.410e-26 Identity = 63/138 (45.65%), Postives = 80/138 (57.97%), Query Frame = 1
Query: 7 VPGLAPYHGLRDFRVEGDVAYAVPNKCQSDILNVKEIIGRIVLVDRGEVSIIEKVLKTQTAGAKGVIVVDNGSCGQEFEYCGV----QDGGFSREDGTHAWTGVKIPVVLVSEAEGQRLKGAMRLRTVVFERLGEQLV 408
VP YH FRV GD+ YAVPN D+ N ++ GR+VLVDRG+V I +K + Q AG G++VVD+G CG F CGV + GF +D W + IPVVLV + +G R+KGAM L V LG Q V
Sbjct: 154 VPAWESYHNPDVFRVYGDIVYAVPNTALDDLYNGHQVDGRLVLVDRGDVPIADKARRVQEAGGTGMVVVDSGECGAAFA-CGVLGSPRQNGFLEQDEWVKWRDMHIPVVLVLQPDGDRIKGAMDLVQVDMPDLGLQYV 290
BLAST of mRNA_H-elongata_contig16242.3965.1 vs. uniprot
Match: W4FSY6_9STRA (PA domain-containing protein n=8 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FSY6_9STRA) HSP 1 Score: 105 bits (263), Expect = 2.120e-25 Identity = 61/139 (43.88%), Postives = 80/139 (57.55%), Query Frame = 1
Query: 4 IVPGLAPYHGLRDFRVEGDVAYAVPNKCQSDILNVKEIIGRIVLVDRGEVSIIEKVLKTQTAGAKGVIVVDNGSCGQEFEYCGV----QDGGFSREDGTHAWTGVKIPVVLVSEAEGQRLKGAMRLRTVVFERLGEQLV 408
+VP YH FRV GD+ YAVPN D+ N ++ GR+VLVDRG+V I +K + Q AG G++VVD+G CG F CGV + GF +D W + IPVVLV + +G R+K AM L + LG Q V
Sbjct: 103 LVPAWESYHNPDVFRVYGDIVYAVPNTALDDLYNGHQVDGRLVLVDRGDVPIADKARRVQEAGGTGMVVVDSGECGAAFA-CGVLGSPRQNGFLEQDEWVKWRDMHIPVVLVLQPDGDRIKAAMDLVQMDMPDLGLQYV 240
BLAST of mRNA_H-elongata_contig16242.3965.1 vs. uniprot
Match: A0A485LS24_9STRA (Aste57867_24352 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LS24_9STRA) HSP 1 Score: 103 bits (257), Expect = 6.790e-25 Identity = 55/127 (43.31%), Postives = 72/127 (56.69%), Query Frame = 1
Query: 1 SIVPGLAPYHGLRDFRVEGDVAYAVPNKCQSDILNVKEIIGRIVLVDRGEVSIIEKVLKTQTAGAKGVIVVDNGSCGQEFEYCGV----QDGGFSREDGTHAWTGVKIPVVLVSEAEGQRLKGAMRL 369
S VP ++ F V G++ YAVPN D+ N + GRI LVDRG+V I+EKV + AG GV+VVD+G CG F CGV GF +D W ++IPVVLV +G R+K A+ L
Sbjct: 63 SFVPAWGSHYNPDSFHVHGEIVYAVPNTANEDLYNAHHVHGRIALVDRGDVPIVEKVKRVHEAGGVGVVVVDSGECGAGFT-CGVLGTPTSNGFLEQDEWFKWKSIRIPVVLVRRDDGDRIKAAIDL 188
BLAST of mRNA_H-elongata_contig16242.3965.1 vs. uniprot
Match: A0A418E1Q2_9STRA (PA domain-containing protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A418E1Q2_9STRA) HSP 1 Score: 95.5 bits (236), Expect = 5.800e-22 Identity = 55/121 (45.45%), Postives = 72/121 (59.50%), Query Frame = 1
Query: 58 DVAYAVPNKCQSDILNVKEIIGRIVLVDRGEVSIIEKVLKTQTAGAKGVIVVDNGSCGQEFEYCGV----QDGGFSREDGTHAWTGVKIPVVLVSEAEGQRLKGAMRLRTVVFERLGEQLV 408
D+ YAVPN D+ N ++ GR+VLVDRG+V I +K + Q AG G++VVD+G CG F CGV + GF +D W + IPVVLV + +G R+KGAM L V LG Q V
Sbjct: 62 DIVYAVPNTALDDLYNGHQVDGRLVLVDRGDVPIADKARRVQEAGGTGMVVVDSGECGAAFA-CGVLGSPRQNGFLEQDEWVKWRDMHIPVVLVLQPDGDRIKGAMDLVQVDMPDLGLQYV 181
BLAST of mRNA_H-elongata_contig16242.3965.1 vs. uniprot
Match: A0A6G0W7Z3_9STRA (PA domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0W7Z3_9STRA) HSP 1 Score: 96.7 bits (239), Expect = 6.120e-22 Identity = 50/114 (43.86%), Postives = 70/114 (61.40%), Query Frame = 1
Query: 40 DFRVEGDVAYAVPNKCQSDILNVKEIIGRIVLVDRGEVSIIEKVLKTQTAGAKGVIVVDNGSCGQEFEYCGVQDG----GFSREDGTHAWTGVKIPVVLVSEAEGQRLKGAMRL 369
D+ V+G++AYAVPN D+ N+ ++ GRIVLVDRG+V I+EKV + Q AG V++VD+G C FE CG F +D + W + IPVVL+ +G R+K M L
Sbjct: 73 DYHVQGEIAYAVPNTANDDLFNIHQLEGRIVLVDRGDVPILEKVERVQEAGGIAVVLVDDGECSDGFE-CGSLGSRSTHNFLEQDDSFRWNHIVIPVVLILHDDGMRIKARMSL 185
BLAST of mRNA_H-elongata_contig16242.3965.1 vs. uniprot
Match: A0A397CPJ1_9STRA (PA domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397CPJ1_9STRA) HSP 1 Score: 90.5 bits (223), Expect = 1.170e-20 Identity = 53/124 (42.74%), Postives = 72/124 (58.06%), Query Frame = 1
Query: 49 VEGDVAYAVPNKCQSDILNVKEIIGRIVLVDRGEVSIIEKVLKTQTAGAKGVIVVDNGSCGQEFEYCGV----QDGGFSREDGTHAWTGVKIPVVLVSEAEGQRLKGAMRLRTVVFERLGEQLV 408
+E + YAVPN D+ N ++ GR+VLVDRG+V I +K + Q AG G++VVD+G CG F CGV + GF +D W + IPVVLV + +G R+K AM L + LG Q V
Sbjct: 1 MEVHIVYAVPNTALDDLYNGHQVDGRLVLVDRGDVPIADKARRVQEAGGTGMVVVDSGECGAAFA-CGVLGSPRQNGFLEQDEWVKWRDMHIPVVLVLQPDGDRIKAAMDLVQMDMPDLGLQYV 123
BLAST of mRNA_H-elongata_contig16242.3965.1 vs. uniprot
Match: D8LI37_ECTSI (PA domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI37_ECTSI) HSP 1 Score: 74.3 bits (181), Expect = 2.290e-13 Identity = 43/112 (38.39%), Postives = 63/112 (56.25%), Query Frame = 1
Query: 37 RDFRVEGDVAYAVPNKCQSDILNVKEIIGRIVLVDRGEVSIIEKVLKTQTAGAKGVIVVDNGSCGQEFEYCGVQDG----GFSREDGTHAWTGVKIPVVLVSEAEGQRLKGA 360
R F+V+ +V A P +S++ N + + RIV+V RG++ I+ KVL Q AGA GVIV D+G CG F V G++ D W V++PVVL+ + +RL A
Sbjct: 78 RSFKVKSEVVVAQPADARSELENGRFVRNRIVVVQRGDIPIVHKVLAAQRAGALGVIVADDGRCGGSFGQLCVYGSDPPEGWAALDMPRPWLDVRVPVVLMLREDAERLTAA 189
BLAST of mRNA_H-elongata_contig16242.3965.1 vs. uniprot
Match: A0A2R5GKD5_9STRA (PA domain-containing protein n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GKD5_9STRA) HSP 1 Score: 72.4 bits (176), Expect = 4.450e-13 Identity = 47/139 (33.81%), Postives = 72/139 (51.80%), Query Frame = 1
Query: 1 SIVPGLAPYHGLRDFRVEGDVAYAVPNKCQSDILNVKEIIGRIVLVDRGE-VSIIEKVLKTQTAGAKGVIVVDN-GSCGQEFEYCGVQDG---------GFSREDGTHAWTGVKIPVVLVSEAEGQRLKGAMRLRTVVF 384
S + +HG + V+G +A AVPN + I+N ++ R+ LV RG V+++EKVL+ Q AGA VI+VD C + F YCG G GF+ +D +W V+IP +L+ + +L L T+
Sbjct: 23 SFIDSWDAHHGPVKYHVDGRLAIAVPNDAREAIINGHQVKDRLTLVYRGGGVTLLEKVLRVQEAGASAVIIVDEEDGCDENF-YCGPFLGQRPADRLSLGFAHQDLASSWRSVRIPAILIRREDALKLTRWENLGTITL 160 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig16242.3965.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig16242.3965.1 >prot_H-elongata_contig16242.3965.1 ID=prot_H-elongata_contig16242.3965.1|Name=mRNA_H-elongata_contig16242.3965.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=143bp SIVPGLAPYHGLRDFRVEGDVAYAVPNKCQSDILNVKEIIGRIVLVDRGEback to top mRNA from alignment at H-elongata_contig16242:5874..6730- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig16242.3965.1 ID=mRNA_H-elongata_contig16242.3965.1|Name=mRNA_H-elongata_contig16242.3965.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=857bp|location=Sequence derived from alignment at H-elongata_contig16242:5874..6730- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig16242:5874..6730- >mRNA_H-elongata_contig16242.3965.1 ID=mRNA_H-elongata_contig16242.3965.1|Name=mRNA_H-elongata_contig16242.3965.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=858bp|location=Sequence derived from alignment at H-elongata_contig16242:5874..6730- (Himanthalia elongata Himel1 dioecious)back to top |