mRNA_H-elongata_contig162292.3960.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig162292.3960.1
Unique NamemRNA_H-elongata_contig162292.3960.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig162292.3960.1 vs. uniprot
Match: D8LRC0_ECTSI (W2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRC0_ECTSI)

HSP 1 Score: 189 bits (479), Expect = 8.450e-57
Identity = 89/93 (95.70%), Postives = 93/93 (100.00%), Query Frame = 1 
Query:    1 RYKMPRVVGKVEGRGNGIKTVIFNIMDLSLALKRNPGEVCKFFGTELGAQTRYNEENERAIVNGAHTNATLQQLVHKYVELFVLCPNCRLPES 279
            RYKMPRV+GKVEGRGNGIKTVIFN+MDLSLALKR+PGEVCKFFGTELGAQTRYNEE+ERAIVNGAHTNATLQQLVHKYVELFVLCPNCRLPES
Sbjct:   19 RYKMPRVIGKVEGRGNGIKTVIFNVMDLSLALKRDPGEVCKFFGTELGAQTRYNEEDERAIVNGAHTNATLQQLVHKYVELFVLCPNCRLPES 111
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BLAST of mRNA_H-elongata_contig162292.3960.1 vs. uniprot
Match: B8BW00_THAPS (W2 domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BW00_THAPS)

HSP 1 Score: 147 bits (370), Expect = 1.140e-40
Identity = 68/93 (73.12%), Postives = 79/93 (84.95%), Query Frame = 1 
Query:    1 RYKMPRVVGKVEGRGNGIKTVIFNIMDLSLALKRNPGEVCKFFGTELGAQTRYNEENERAIVNGAHTNATLQQLVHKYVELFVLCPNCRLPES 279
            RYKMP V GK+EG+GNGIKTVI NI D+ L+L R+ GEV KFFG ELGAQT YN E +RA+VNGAHT+  LQQ+VHKY+ELFVLCPNCRLPE+
Sbjct:   22 RYKMPTVYGKIEGKGNGIKTVIPNISDVGLSLHRDAGEVNKFFGCELGAQTTYNTETDRAVVNGAHTDQVLQQMVHKYIELFVLCPNCRLPET 114
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BLAST of mRNA_H-elongata_contig162292.3960.1 vs. uniprot
Match: A0A7S2KDW7_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2KDW7_9STRA)

HSP 1 Score: 146 bits (369), Expect = 1.270e-40
Identity = 68/93 (73.12%), Postives = 80/93 (86.02%), Query Frame = 1 
Query:    1 RYKMPRVVGKVEGRGNGIKTVIFNIMDLSLALKRNPGEVCKFFGTELGAQTRYNEENERAIVNGAHTNATLQQLVHKYVELFVLCPNCRLPES 279
            RYKMP+VVGK+EGRGNG KTVI NI +L+L+L R+PGEV KFFGTELGAQT Y++E  RA+VNG HT+A LQQ VHKYVE FV+CPNC LPE+
Sbjct:   21 RYKMPKVVGKLEGRGNGSKTVIVNISELALSLHRDPGEVNKFFGTELGAQTTYSDETNRAVVNGHHTDAVLQQAVHKYVEAFVICPNCGLPET 113
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BLAST of mRNA_H-elongata_contig162292.3960.1 vs. uniprot
Match: A0A7S3DU57_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S3DU57_9STRA)

HSP 1 Score: 140 bits (352), Expect = 3.930e-40
Identity = 66/93 (70.97%), Postives = 77/93 (82.80%), Query Frame = 1 
Query:    1 RYKMPRVVGKVEGRGNGIKTVIFNIMDLSLALKRNPGEVCKFFGTELGAQTRYNEENERAIVNGAHTNATLQQLVHKYVELFVLCPNCRLPES 279
            RYKMP V GK+EG GNGIKTV+ NI D+  +L R PGEV KFFGTELGAQ+RY+ E +RAIVNGAHT+A LQ L++KYVE FVLCPNC LPE+
Sbjct:   23 RYKMPAVYGKIEGSGNGIKTVVPNITDVGTSLHRAPGEVNKFFGTELGAQSRYSAETDRAIVNGAHTDAVLQDLINKYVEKFVLCPNCGLPET 115
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BLAST of mRNA_H-elongata_contig162292.3960.1 vs. uniprot
Match: A0A1Z5JLW0_FISSO (Translation initiation factor 5 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JLW0_FISSO)

HSP 1 Score: 144 bits (363), Expect = 1.120e-39
Identity = 63/93 (67.74%), Postives = 81/93 (87.10%), Query Frame = 1 
Query:    1 RYKMPRVVGKVEGRGNGIKTVIFNIMDLSLALKRNPGEVCKFFGTELGAQTRYNEENERAIVNGAHTNATLQQLVHKYVELFVLCPNCRLPES 279
            RYKMP V GK+EG GNGIKTV+ N++D++ +L R PGEV KFFGTE+GAQ+RY+ + +RAIVNGAHT+ATLQ+L+H+Y+E FVLCP CRLPE+
Sbjct:   23 RYKMPAVFGKIEGSGNGIKTVLVNVLDVANSLHREPGEVSKFFGTEMGAQSRYSADTDRAIVNGAHTDATLQELMHRYIEKFVLCPTCRLPET 115
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BLAST of mRNA_H-elongata_contig162292.3960.1 vs. uniprot
Match: A0A7S1H590_9STRA (Hypothetical protein (Fragment) n=1 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1H590_9STRA)

HSP 1 Score: 138 bits (348), Expect = 1.190e-39
Identity = 64/93 (68.82%), Postives = 76/93 (81.72%), Query Frame = 1 
Query:    1 RYKMPRVVGKVEGRGNGIKTVIFNIMDLSLALKRNPGEVCKFFGTELGAQTRYNEENERAIVNGAHTNATLQQLVHKYVELFVLCPNCRLPES 279
            RYKMP V GK+EGRGNGIKTVI NI D++ +L R P EV KFFG ELGAQT Y  +  RA+VNGAHT+ATLQ L+H+Y+E FV+CPNCRLPE+
Sbjct:   23 RYKMPAVFGKIEGRGNGIKTVIPNIDDVAFSLHRKPAEVNKFFGCELGAQTSYAADTSRAVVNGAHTDATLQSLMHRYIENFVICPNCRLPET 115
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BLAST of mRNA_H-elongata_contig162292.3960.1 vs. uniprot
Match: A0A7S1D9Q5_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D9Q5_CYCTE)

HSP 1 Score: 143 bits (360), Expect = 3.730e-39
Identity = 66/93 (70.97%), Postives = 77/93 (82.80%), Query Frame = 1 
Query:    1 RYKMPRVVGKVEGRGNGIKTVIFNIMDLSLALKRNPGEVCKFFGTELGAQTRYNEENERAIVNGAHTNATLQQLVHKYVELFVLCPNCRLPES 279
            RYKMP V GK+EGRGNGIKTVI NI D+ L+L R  GEV KFFGTELGAQT YN + +RA+VNGAHT+ TLQ L+H+Y+E FVLCPNC LPE+
Sbjct:   23 RYKMPAVYGKIEGRGNGIKTVIPNISDVGLSLHREAGEVTKFFGTELGAQTTYNPDTDRAVVNGAHTDDTLQDLMHRYIEKFVLCPNCSLPET 115
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BLAST of mRNA_H-elongata_contig162292.3960.1 vs. uniprot
Match: A0A7S3V5E2_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3V5E2_9STRA)

HSP 1 Score: 142 bits (359), Expect = 5.050e-39
Identity = 65/93 (69.89%), Postives = 79/93 (84.95%), Query Frame = 1 
Query:    1 RYKMPRVVGKVEGRGNGIKTVIFNIMDLSLALKRNPGEVCKFFGTELGAQTRYNEENERAIVNGAHTNATLQQLVHKYVELFVLCPNCRLPES 279
            RYKMP V+GK+EG+GNGIKTVI N+ DL+L+L R+PGEV KFFG E+GAQT YNE ++RA+VNGAH++  LQ  VHKYVE FVLCPNC LPE+
Sbjct:   19 RYKMPSVMGKIEGKGNGIKTVIVNVYDLALSLHRDPGEVNKFFGCEMGAQTTYNETDDRAVVNGAHSDGELQGCVHKYVEKFVLCPNCGLPET 111
[Close]
BLAST of mRNA_H-elongata_contig162292.3960.1 vs. uniprot
Match: A0A6V2MCK3_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2MCK3_9STRA)

HSP 1 Score: 142 bits (358), Expect = 7.740e-39
Identity = 65/93 (69.89%), Postives = 79/93 (84.95%), Query Frame = 1 
Query:    1 RYKMPRVVGKVEGRGNGIKTVIFNIMDLSLALKRNPGEVCKFFGTELGAQTRYNEENERAIVNGAHTNATLQQLVHKYVELFVLCPNCRLPES 279
            RYKMP V GK+EGRGNGIKTVI NI +++L+L R PGEV KFFG ELGAQT YN + +RA+VNGAHT++ LQ +VH+Y+E FVLCPNCRLPE+
Sbjct:   22 RYKMPTVYGKIEGRGNGIKTVIPNISEVALSLHRPPGEVNKFFGCELGAQTTYNADTDRAVVNGAHTDSVLQNMVHRYIEGFVLCPNCRLPET 114
[Close]
BLAST of mRNA_H-elongata_contig162292.3960.1 vs. uniprot
Match: B7G289_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G289_PHATC)

HSP 1 Score: 142 bits (357), Expect = 1.110e-38
Identity = 65/93 (69.89%), Postives = 78/93 (83.87%), Query Frame = 1 
Query:    1 RYKMPRVVGKVEGRGNGIKTVIFNIMDLSLALKRNPGEVCKFFGTELGAQTRYNEENERAIVNGAHTNATLQQLVHKYVELFVLCPNCRLPES 279
            RYKMP V GK+EG GNGIKTVI NI +++L+L R PGEV KFFGTELGAQTRY+ E +RA+VNGAH +A LQ L+H+Y+E FVLCPNC LPE+
Sbjct:   23 RYKMPAVFGKIEGSGNGIKTVIPNITEVALSLHRQPGEVNKFFGTELGAQTRYSAETDRAVVNGAHMDAVLQDLMHRYIERFVLCPNCNLPET 115
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig162292.3960.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LRC0_ECTSI8.450e-5795.70W2 domain-containing protein n=2 Tax=Ectocarpus Ta... [more]
B8BW00_THAPS1.140e-4073.12W2 domain-containing protein n=1 Tax=Thalassiosira... [more]
A0A7S2KDW7_9STRA1.270e-4073.12Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A7S3DU57_9STRA3.930e-4070.97Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]
A0A1Z5JLW0_FISSO1.120e-3967.74Translation initiation factor 5 n=2 Tax=Fistulifer... [more]
A0A7S1H590_9STRA1.190e-3968.82Hypothetical protein (Fragment) n=1 Tax=Thalassion... [more]
A0A7S1D9Q5_CYCTE3.730e-3970.97Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A0A7S3V5E2_9STRA5.050e-3969.89Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A6V2MCK3_9STRA7.740e-3969.89Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
B7G289_PHATC1.110e-3869.89Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig162292contigH-elongata_contig162292:64..671 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score183.0
Seed ortholog evalue6.4e-44
Seed eggNOG ortholog2880.D8LRC0
Preferred nameEIF5
KEGG koko:K03262,ko:K10683
KEGG Pathwayko03013,ko03440,ko04214,map03013,map03440,map04214
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464
EggNOG free text desc.translation initiation factor activity
EggNOG OGsCOG1601@1,KOG2767@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03012,ko03019,ko03036,ko04121
Hectar predicted targeting categoryother localisation
Exons2
Model size279
Cds size270
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig162292.3960.1prot_H-elongata_contig162292.3960.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig162292 64..662 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929950.1304352-CDS-H-elongata_contig162292:63..1921622929950.1304352-CDS-H-elongata_contig162292:63..192Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig162292 64..192 -
1691679220.0963383-CDS-H-elongata_contig162292:63..1921691679220.0963383-CDS-H-elongata_contig162292:63..192Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig162292 64..192 -
1622929950.1447682-CDS-H-elongata_contig162292:521..6621622929950.1447682-CDS-H-elongata_contig162292:521..662Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig162292 522..662 -
1691679220.1062927-CDS-H-elongata_contig162292:521..6621691679220.1062927-CDS-H-elongata_contig162292:521..662Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig162292 522..662 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929950.1563218-UTR-H-elongata_contig162292:662..6711622929950.1563218-UTR-H-elongata_contig162292:662..671Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig162292 663..671 -
1691679220.113776-UTR-H-elongata_contig162292:662..6711691679220.113776-UTR-H-elongata_contig162292:662..671Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig162292 663..671 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig162292.3960.1

>prot_H-elongata_contig162292.3960.1 ID=prot_H-elongata_contig162292.3960.1|Name=mRNA_H-elongata_contig162292.3960.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=90bp
MPRVVGKVEGRGNGIKTVIFNIMDLSLALKRNPGEVCKFFGTELGAQTRY
NEENERAIVNGAHTNATLQQLVHKYVELFVLCPNCRLPES
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mRNA from alignment at H-elongata_contig162292:64..671-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig162292.3960.1 ID=mRNA_H-elongata_contig162292.3960.1|Name=mRNA_H-elongata_contig162292.3960.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=608bp|location=Sequence derived from alignment at H-elongata_contig162292:64..671- (Himanthalia elongata Himel1 dioecious)
AGGTACAAAATGCCCCGCGTGGTCGGCAAGGTCGAGGGCAGGGGTAACGG
CATCAAGACCGTGATCTTCAACATCATGGACCTGTCCCTCGCCCTCAAGA
GGAACCCCGGAGAGGTCTGCAAGTTTTTCGGTACCGAGCTCGGCGCCCAG
GTGAGCTGCCAGACAGGAACCCCCAAGAGGAACACAATTGTACGTGATAT
ATGTGTGAGGTTTTTACTCTGCTATAGAAATGATATTTTCTGTGCTGCGT
TACCCGTTGGCTCGTATTCCACAAGTTTTGGTCTGCATGAAAAACAACTC
TCATTTGTATGCGCCCGCAGCAGAGCAGCACTTGAGGGCAACAATCGGAT
AACGGGTGGAGGCACGAAAGTGTCGCGCTTGACCTGACTACGGTACGCGT
CAACCCTCCCTTCCATTTTCCCCTTCCCCCCAAACGTGCTGTATCCTGTG
GAACTCCGTCGACGGATTCTGCCCGTCAGACCCGCTACAACGAGGAGAAC
GAGCGCGCTATCGTGAACGGTGCCCACACAAACGCAACGCTGCAGCAGCT
CGTACATAAATACGTGGAGCTATTCGTGCTCTGCCCCAACTGTCGCCTTC
CGGAGTCT
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Coding sequence (CDS) from alignment at H-elongata_contig162292:64..671-

>mRNA_H-elongata_contig162292.3960.1 ID=mRNA_H-elongata_contig162292.3960.1|Name=mRNA_H-elongata_contig162292.3960.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=540bp|location=Sequence derived from alignment at H-elongata_contig162292:64..671- (Himanthalia elongata Himel1 dioecious)
ATGCCCCGCGTGGTCGGCAAGGTCGAGGGCAGGGGTAACGGCATCAAGAC
CGTGATCTTCAACATCATGGACCTGTCCCTCGCCCTCAAGAGGAACCCCG
GAGAGGTCTGCAAGTTTTTCGGTACCGAGCTCGGCGCCCAGATGCCCCGC
GTGGTCGGCAAGGTCGAGGGCAGGGGTAACGGCATCAAGACCGTGATCTT
CAACATCATGGACCTGTCCCTCGCCCTCAAGAGGAACCCCGGAGAGGTCT
GCAAGTTTTTCGGTACCGAGCTCGGCGCCCAGACCCGCTACAACGAGGAG
AACGAGCGCGCTATCGTGAACGGTGCCCACACAAACGCAACGCTGCAGCA
GCTCGTACATAAATACGTGGAGCTATTCGTGCTCTGCCCCAACTGTCGCC
TTCCGGAGTCTACCCGCTACAACGAGGAGAACGAGCGCGCTATCGTGAAC
GGTGCCCACACAAACGCAACGCTGCAGCAGCTCGTACATAAATACGTGGA
GCTATTCGTGCTCTGCCCCAACTGTCGCCTTCCGGAGTCT
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