mRNA_H-elongata_contig162246.3957.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig162246.3957.1
Unique NamemRNA_H-elongata_contig162246.3957.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig162246.3957.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig162246contigH-elongata_contig162246:1157..1291 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionZinc finger, RING/FYVE/PHD-type
Ec32 orthologEc-04_001330.1
Exons1
Model size135
Cds size135
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929949.9878793-CDS-H-elongata_contig162246:1156..12911622929949.9878793-CDS-H-elongata_contig162246:1156..1291Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig162246 1157..1291 -
1691679220.0542989-CDS-H-elongata_contig162246:1156..12911691679220.0542989-CDS-H-elongata_contig162246:1156..1291Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig162246 1157..1291 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig162246.3957.1prot_H-elongata_contig162246.3957.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig162246 1157..1291 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig162246.3957.1

>prot_H-elongata_contig162246.3957.1 ID=prot_H-elongata_contig162246.3957.1|Name=mRNA_H-elongata_contig162246.3957.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=45bp
SYERHAILQWFSECKTNHRPCSSPMSGAVIASETVTSNYALKSSI
back to top

mRNA from alignment at H-elongata_contig162246:1157..1291-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig162246.3957.1 ID=mRNA_H-elongata_contig162246.3957.1|Name=mRNA_H-elongata_contig162246.3957.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=135bp|location=Sequence derived from alignment at H-elongata_contig162246:1157..1291- (Himanthalia elongata Himel1 dioecious)
AGCTACGAGCGGCACGCCATTCTTCAGTGGTTCTCCGAGTGCAAGACCAA
CCACAGGCCCTGCAGCTCACCCATGTCGGGCGCGGTCATTGCCAGTGAGA
CCGTCACGAGTAATTACGCTCTCAAGAGCAGCATT
back to top

Coding sequence (CDS) from alignment at H-elongata_contig162246:1157..1291-

>mRNA_H-elongata_contig162246.3957.1 ID=mRNA_H-elongata_contig162246.3957.1|Name=mRNA_H-elongata_contig162246.3957.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=270bp|location=Sequence derived from alignment at H-elongata_contig162246:1157..1291- (Himanthalia elongata Himel1 dioecious)
AGCTACGAGCGGCACGCCATTCTTCAGTGGTTCTCCGAGTGCAAGACCAA
CCACAGGCCCTGCAGCTCACCCATGTCGGGCGCGGTCATTGCCAGTGAGA
CCGTCACGAGTAATTACGCTCTCAAGAGCAGCATTAGCTACGAGCGGCAC
GCCATTCTTCAGTGGTTCTCCGAGTGCAAGACCAACCACAGGCCCTGCAG
CTCACCCATGTCGGGCGCGGTCATTGCCAGTGAGACCGTCACGAGTAATT
ACGCTCTCAAGAGCAGCATT
back to top