mRNA_H-elongata_contig162208.3956.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig162208.3956.1
Unique NamemRNA_H-elongata_contig162208.3956.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig162208.3956.1 vs. uniprot
Match: D8LIA4_ECTSI (Kinesin-associated protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIA4_ECTSI)

HSP 1 Score: 74.7 bits (182), Expect = 1.990e-14
Identity = 37/49 (75.51%), Postives = 39/49 (79.59%), Query Frame = 1 
Query:    1 FLHIKKVFGENKDRAKERGVVEPLVRFVPCSCEPLVVMTLRLLYNLSFD 147
            FL    V  ENKDRAKE GV   LVRFVPCSC+PL+VMTLRLLYNLSFD
Sbjct:  355 FLKKLSVLEENKDRAKECGVAGCLVRFVPCSCDPLIVMTLRLLYNLSFD 403
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BLAST of mRNA_H-elongata_contig162208.3956.1 vs. uniprot
Match: A0A836C6Y4_9STRA (Kinesin-associated protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C6Y4_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 2.940e-12
Identity = 32/49 (65.31%), Postives = 37/49 (75.51%), Query Frame = 1 
Query:    1 FLHIKKVFGENKDRAKERGVVEPLVRFVPCSCEPLVVMTLRLLYNLSFD 147
            FL    +F ENKDR KE  V   +V+FVPCSCEPL +M+LRLLYNLSFD
Sbjct:  342 FLKKLSIFEENKDREKEAQVAAKVVKFVPCSCEPLTLMSLRLLYNLSFD 390
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BLAST of mRNA_H-elongata_contig162208.3956.1 vs. uniprot
Match: A0A7S3GZU8_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GZU8_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 2.090e-9
Identity = 29/49 (59.18%), Postives = 37/49 (75.51%), Query Frame = 1 
Query:    1 FLHIKKVFGENKDRAKERGVVEPLVRFVPCSCEPLVVMTLRLLYNLSFD 147
            FL    + GENK+  K  GVVE L RFVPCS +PL++++LRLL+NLSFD
Sbjct:  410 FLKKLCIVGENKEAMKRLGVVEILNRFVPCSSQPLIMISLRLLFNLSFD 458
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BLAST of mRNA_H-elongata_contig162208.3956.1 vs. uniprot
Match: A0A812QE41_SYMMI (KAP115 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812QE41_SYMMI)

HSP 1 Score: 54.7 bits (130), Expect = 2.280e-7
Identity = 25/49 (51.02%), Postives = 35/49 (71.43%), Query Frame = 1 
Query:    1 FLHIKKVFGENKDRAKERGVVEPLVRFVPCSCEPLVVMTLRLLYNLSFD 147
            FL    +F ENK+  K+RG++  L + +PCS +PL+  TLRLL+NLSFD
Sbjct:   28 FLKKLSIFEENKNSFKQRGILVKLSKLLPCSSQPLMHATLRLLFNLSFD 76
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BLAST of mRNA_H-elongata_contig162208.3956.1 vs. uniprot
Match: UPI001402F5EF (kinesin-associated protein 3 isoform X1 n=2 Tax=Petromyzon marinus TaxID=7757 RepID=UPI001402F5EF)

HSP 1 Score: 54.3 bits (129), Expect = 3.120e-7
Identity = 28/49 (57.14%), Postives = 34/49 (69.39%), Query Frame = 1 
Query:    1 FLHIKKVFGENKDRAKERGVVEPLVRFVPCSCEPLVVMTLRLLYNLSFD 147
            FL    +F ENK+   E GVVE L R VPC+ E L+ +TLRLL+NLSFD
Sbjct:  336 FLKKLSIFIENKNDMAELGVVEKLTRLVPCAHEDLLNITLRLLFNLSFD 384
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BLAST of mRNA_H-elongata_contig162208.3956.1 vs. uniprot
Match: A0A482RY74_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RY74_9ARCH)

HSP 1 Score: 51.2 bits (121), Expect = 3.800e-6
Identity = 25/49 (51.02%), Postives = 35/49 (71.43%), Query Frame = 1 
Query:    1 FLHIKKVFGENKDRAKERGVVEPLVRFVPCSCEPLVVMTLRLLYNLSFD 147
            FL    VF ENK+  K+  +V+ + +F+ CS +PLV+M LRLL+NLSFD
Sbjct:  336 FLKKLSVFEENKEAFKQCLLVDHVSKFLACSSQPLVLMVLRLLFNLSFD 384
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BLAST of mRNA_H-elongata_contig162208.3956.1 vs. uniprot
Match: A0A3B3DRY4_ORYME (Kinesin associated protein 3 n=7 Tax=Oryzias TaxID=8089 RepID=A0A3B3DRY4_ORYME)

HSP 1 Score: 48.5 bits (114), Expect = 3.440e-5
Identity = 26/49 (53.06%), Postives = 31/49 (63.27%), Query Frame = 1 
Query:    1 FLHIKKVFGENKDRAKERGVVEPLVRFVPCSCEPLVVMTLRLLYNLSFD 147
            FL    +F ENK+   E   VE L R VPC  E L+ +TLRLL+NLSFD
Sbjct:  331 FLKKLSIFLENKNDMAEVDTVEKLGRLVPCEHEDLMNLTLRLLFNLSFD 379
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BLAST of mRNA_H-elongata_contig162208.3956.1 vs. uniprot
Match: K3X421_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X421_GLOUD)

HSP 1 Score: 47.8 bits (112), Expect = 6.430e-5
Identity = 23/49 (46.94%), Postives = 32/49 (65.31%), Query Frame = 1 
Query:    1 FLHIKKVFGENKDRAKERGVVEPLVRFVPCSCEPLVVMTLRLLYNLSFD 147
            FL    +F ENKD   E  VVE L+R+  C+ +  + M+L+LL+NLSFD
Sbjct:  220 FLKKLSIFEENKDTMVELVVVEKLIRYARCNHDKTIQMSLKLLFNLSFD 268
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig162208.3956.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D8LIA4_ECTSI1.990e-1475.51Kinesin-associated protein n=1 Tax=Ectocarpus sili... [more]
A0A836C6Y4_9STRA2.940e-1265.31Kinesin-associated protein n=1 Tax=Tribonema minus... [more]
A0A7S3GZU8_9STRA2.090e-959.18Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A812QE41_SYMMI2.280e-751.02KAP115 protein n=1 Tax=Symbiodinium microadriaticu... [more]
UPI001402F5EF3.120e-757.14kinesin-associated protein 3 isoform X1 n=2 Tax=Pe... [more]
A0A482RY74_9ARCH3.800e-651.02Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A3B3DRY4_ORYME3.440e-553.06Kinesin associated protein 3 n=7 Tax=Oryzias TaxID... [more]
K3X421_GLOUD6.430e-546.94Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig162208contigH-elongata_contig162208:6..152 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score75.1
Seed ortholog evalue1e-11
Seed eggNOG ortholog2880.D8LIA4
Preferred nameKIFAP3
GOsGO:0000226,GO:0000228,GO:0000793,GO:0000794,GO:0002376,GO:0002478,GO:0002495,GO:0002504,GO:0003008,GO:0003674,GO:0003774,GO:0003777,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005737,GO:0005783,GO:0005794,GO:0005813,GO:0005815,GO:0005829,GO:0005856,GO:0005871,GO:0005875,GO:0005886,GO:0005929,GO:0005930,GO:0006810,GO:0006890,GO:0006928,GO:0006996,GO:0007010,GO:0007017,GO:0007018,GO:0007154,GO:0007163,GO:0007165,GO:0007600,GO:0007605,GO:0007606,GO:0007608,GO:0008088,GO:0008089,GO:0008092,GO:0008104,GO:0008150,GO:0008285,GO:0009987,GO:0010638,GO:0010639,GO:0010941,GO:0010970,GO:0012505,GO:0015630,GO:0016020,GO:0016043,GO:0016192,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016939,GO:0017111,GO:0019882,GO:0019884,GO:0019886,GO:0019894,GO:0022407,GO:0022409,GO:0022607,GO:0023052,GO:0030030,GO:0030031,GO:0030155,GO:0030705,GO:0030951,GO:0030952,GO:0030993,GO:0031344,GO:0031345,GO:0031346,GO:0031503,GO:0031974,GO:0031981,GO:0032391,GO:0032501,GO:0032838,GO:0032991,GO:0033036,GO:0033043,GO:0035720,GO:0035735,GO:0035869,GO:0036064,GO:0042073,GO:0042127,GO:0042981,GO:0042995,GO:0043005,GO:0043066,GO:0043067,GO:0043069,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044087,GO:0044089,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044447,GO:0044459,GO:0044463,GO:0044464,GO:0044782,GO:0045724,GO:0045785,GO:0046586,GO:0046587,GO:0046907,GO:0047496,GO:0048002,GO:0048193,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050794,GO:0050877,GO:0050896,GO:0050954,GO:0051128,GO:0051129,GO:0051130,GO:0051179,GO:0051234,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0051716,GO:0060271,GO:0060491,GO:0060548,GO:0065003,GO:0065007,GO:0070013,GO:0070925,GO:0071840,GO:0071944,GO:0072383,GO:0072384,GO:0072386,GO:0097014,GO:0097458,GO:0097542,GO:0097730,GO:0097731,GO:0097733,GO:0098590,GO:0098930,GO:0099111,GO:0099518,GO:0099568,GO:0120025,GO:0120031,GO:0120032,GO:0120033,GO:0120034,GO:0120035,GO:0120036,GO:0120038,GO:1902017,GO:1902018,GO:1902115,GO:1902116,GO:1902117,GO:1902855,GO:1902856,GO:1902857,GO:1905515,GO:1990075
EggNOG free text desc.positive regulation of calcium-dependent cell-cell adhesion
EggNOG OGsKOG1222@1,KOG1222@2759
COG Functional cat.M
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size147
Cds size147
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929949.9391334-CDS-H-elongata_contig162208:5..1521622929949.9391334-CDS-H-elongata_contig162208:5..152Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig162208 6..152 -
1691679220.0401807-CDS-H-elongata_contig162208:5..1521691679220.0401807-CDS-H-elongata_contig162208:5..152Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig162208 6..152 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig162208.3956.1prot_H-elongata_contig162208.3956.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig162208 6..152 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig162208.3956.1

>prot_H-elongata_contig162208.3956.1 ID=prot_H-elongata_contig162208.3956.1|Name=mRNA_H-elongata_contig162208.3956.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=49bp
FLHIKKVFGENKDRAKERGVVEPLVRFVPCSCEPLVVMTLRLLYNLSFD
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mRNA from alignment at H-elongata_contig162208:6..152-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig162208.3956.1 ID=mRNA_H-elongata_contig162208.3956.1|Name=mRNA_H-elongata_contig162208.3956.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=147bp|location=Sequence derived from alignment at H-elongata_contig162208:6..152- (Himanthalia elongata Himel1 dioecious)
TTTTTGCATATAAAAAAGGTTTTCGGGGAAAACAAGGACCGGGCGAAGGA
GCGCGGAGTGGTGGAGCCCCTCGTCCGCTTCGTGCCATGCTCCTGCGAGC
CCCTTGTCGTGATGACGCTCAGACTGCTCTACAATCTCAGCTTCGAC
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Coding sequence (CDS) from alignment at H-elongata_contig162208:6..152-

>mRNA_H-elongata_contig162208.3956.1 ID=mRNA_H-elongata_contig162208.3956.1|Name=mRNA_H-elongata_contig162208.3956.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=294bp|location=Sequence derived from alignment at H-elongata_contig162208:6..152- (Himanthalia elongata Himel1 dioecious)
TTTTTGCATATAAAAAAGGTTTTCGGGGAAAACAAGGACCGGGCGAAGGA
GCGCGGAGTGGTGGAGCCCCTCGTCCGCTTCGTGCCATGCTCCTGCGAGC
CCCTTGTCGTGATGACGCTCAGACTGCTCTACAATCTCAGCTTCGACTTT
TTGCATATAAAAAAGGTTTTCGGGGAAAACAAGGACCGGGCGAAGGAGCG
CGGAGTGGTGGAGCCCCTCGTCCGCTTCGTGCCATGCTCCTGCGAGCCCC
TTGTCGTGATGACGCTCAGACTGCTCTACAATCTCAGCTTCGAC
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