mRNA_H-elongata_contig162135.3952.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig162135.3952.1
Unique NamemRNA_H-elongata_contig162135.3952.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig162135.3952.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig162135contigH-elongata_contig162135:132..524 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size393
Cds size384
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929949.5863984-UTR-H-elongata_contig162135:131..1401622929949.5863984-UTR-H-elongata_contig162135:131..140Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig162135 132..140 +
1691679219.8901272-UTR-H-elongata_contig162135:131..1401691679219.8901272-UTR-H-elongata_contig162135:131..140Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig162135 132..140 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929949.6337073-CDS-H-elongata_contig162135:140..5241622929949.6337073-CDS-H-elongata_contig162135:140..524Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig162135 141..524 +
1691679219.89969-CDS-H-elongata_contig162135:140..5241691679219.89969-CDS-H-elongata_contig162135:140..524Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig162135 141..524 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig162135.3952.1prot_H-elongata_contig162135.3952.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig162135 141..524 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig162135.3952.1

>prot_H-elongata_contig162135.3952.1 ID=prot_H-elongata_contig162135.3952.1|Name=mRNA_H-elongata_contig162135.3952.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=128bp
MLREAPPRQSFARRGLPAIVAAPSPVPRPPQGRRREGSSLSPSPPSPSRS
SAGMSFDNRRTFRDGGDVEDGKQECGEKIASSKKRPQPSARAPRVPTSDR
TPKRAETTLAEAGVETAATGQPLSLSTR
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mRNA from alignment at H-elongata_contig162135:132..524+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig162135.3952.1 ID=mRNA_H-elongata_contig162135.3952.1|Name=mRNA_H-elongata_contig162135.3952.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=393bp|location=Sequence derived from alignment at H-elongata_contig162135:132..524+ (Himanthalia elongata Himel1 dioecious)
CTGGATGAGATGCTCCGTGAAGCTCCCCCGCGGCAATCATTTGCCCGGCG
CGGCTTGCCAGCCATCGTCGCCGCTCCTTCGCCCGTTCCCCGCCCACCAC
AGGGCCGCCGTCGTGAAGGCTCTTCACTATCGCCTTCGCCGCCATCGCCG
TCTAGATCCTCGGCAGGGATGAGCTTCGACAATAGACGTACTTTTCGAGA
TGGTGGCGATGTCGAGGATGGCAAACAAGAATGTGGCGAAAAAATAGCGT
CCTCAAAGAAAAGGCCACAACCATCGGCCCGTGCTCCTCGGGTGCCGACA
TCTGATAGAACTCCAAAACGAGCGGAGACCACCTTGGCAGAGGCGGGTGT
GGAAACTGCGGCGACTGGGCAGCCGTTGTCCCTGTCGACGCGC
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Coding sequence (CDS) from alignment at H-elongata_contig162135:132..524+

>mRNA_H-elongata_contig162135.3952.1 ID=mRNA_H-elongata_contig162135.3952.1|Name=mRNA_H-elongata_contig162135.3952.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=768bp|location=Sequence derived from alignment at H-elongata_contig162135:132..524+ (Himanthalia elongata Himel1 dioecious)
ATGCTCCGTGAAGCTCCCCCGCGGCAATCATTTGCCCGGCGCGGCTTGCC
AGCCATCGTCGCCGCTCCTTCGCCCGTTCCCCGCCCACCACAGGGCCGCC
GTCGTGAAGGCTCTTCACTATCGCCTTCGCCGCCATCGCCGTCTAGATCC
TCGGCAGGGATGAGCTTCGACAATAGACGTACTTTTCGAGATGGTGGCGA
TGTCGAGGATGGCAAACAAGAATGTGGCGAAAAAATAGCGTCCTCAAAGA
AAAGGCCACAACCATCGGCCCGTGCTCCTCGGGTGCCGACATCTGATAGA
ACTCCAAAACGAGCGGAGACCACCTTGGCAGAGGCGGGTGTGGAAACTGC
GGCGACTGGGCAGCCGTTGTCCCTGTCGACGCGCATGCTCCGTGAAGCTC
CCCCGCGGCAATCATTTGCCCGGCGCGGCTTGCCAGCCATCGTCGCCGCT
CCTTCGCCCGTTCCCCGCCCACCACAGGGCCGCCGTCGTGAAGGCTCTTC
ACTATCGCCTTCGCCGCCATCGCCGTCTAGATCCTCGGCAGGGATGAGCT
TCGACAATAGACGTACTTTTCGAGATGGTGGCGATGTCGAGGATGGCAAA
CAAGAATGTGGCGAAAAAATAGCGTCCTCAAAGAAAAGGCCACAACCATC
GGCCCGTGCTCCTCGGGTGCCGACATCTGATAGAACTCCAAAACGAGCGG
AGACCACCTTGGCAGAGGCGGGTGTGGAAACTGCGGCGACTGGGCAGCCG
TTGTCCCTGTCGACGCGC
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