mRNA_H-elongata_contig162074.3948.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig162074.3948.1
Unique NamemRNA_H-elongata_contig162074.3948.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig162074.3948.1 vs. uniprot
Match: A0A6P1E889_9GAMM (Tetratricopeptide repeat-containing protein n=1 Tax=Thiorhodococcus mannitoliphagus TaxID=329406 RepID=A0A6P1E889_9GAMM)

HSP 1 Score: 50.4 bits (119), Expect = 2.260e-6
Identity = 22/38 (57.89%), Postives = 30/38 (78.95%), Query Frame = 1 
Query:   16 KGNHVEAESLHRRALEMRTRALGPSHLDVAATLNNLAV 129
            +G + EAESL++RALE+R   LGP HL+V  +LNNLA+
Sbjct:    3 QGRYAEAESLNKRALEIRQEILGPEHLEVGTSLNNLAL 40
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BLAST of mRNA_H-elongata_contig162074.3948.1 vs. uniprot
Match: A0A7S1C9P3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C9P3_9STRA)

HSP 1 Score: 50.4 bits (119), Expect = 7.020e-6
Identity = 24/38 (63.16%), Postives = 29/38 (76.32%), Query Frame = 1 
Query:   31 EAESLHRRALEMRTRALGPSHLDVAATLNNLAVSLKAQ 144
            EAE++HRRAL MR   LGPSH+D+A +LNNLA  L  Q
Sbjct:  176 EAEAMHRRALAMREELLGPSHVDIALSLNNLANLLDEQ 213
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BLAST of mRNA_H-elongata_contig162074.3948.1 vs. uniprot
Match: A0A7S1C7G2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C7G2_9STRA)

HSP 1 Score: 47.4 bits (111), Expect = 3.470e-5
Identity = 23/38 (60.53%), Postives = 28/38 (73.68%), Query Frame = 1 
Query:   16 KGNHVEAESLHRRALEMRTRALGPSHLDVAATLNNLAV 129
            +G   EAE L RRAL MR +  GPSH+DVA +LNNLA+
Sbjct:   87 QGRFDEAEPLLRRALAMREKLFGPSHVDVAQSLNNLAL 124
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BLAST of mRNA_H-elongata_contig162074.3948.1 vs. uniprot
Match: A0A1I3XVU7_9DELT (Tfp pilus assembly protein PilF (Fragment) n=1 Tax=Desulfomicrobium apsheronum TaxID=52560 RepID=A0A1I3XVU7_9DELT)

HSP 1 Score: 48.9 bits (115), Expect = 3.540e-5
Identity = 21/41 (51.22%), Postives = 33/41 (80.49%), Query Frame = 1 
Query:    4 LFPYKGNHVEAESLHRRALEMRTRALGPSHLDVAATLNNLA 126
            L+  +G++ +AESL++R+L +R +ALGP H DVA +L+NLA
Sbjct:    1 LYDNQGDYAQAESLYKRSLAIREKALGPDHPDVATSLSNLA 41
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BLAST of mRNA_H-elongata_contig162074.3948.1 vs. uniprot
Match: A0A1D8CZR2_CHLLM (TIR domain-containing protein n=2 Tax=Chlorobaculum limnaeum TaxID=274537 RepID=A0A1D8CZR2_CHLLM)

HSP 1 Score: 48.5 bits (114), Expect = 4.890e-5
Identity = 21/40 (52.50%), Postives = 32/40 (80.00%), Query Frame = 1 
Query:   16 KGNHVEAESLHRRALEMRTRALGPSHLDVAATLNNLAVSL 135
            +G +V+AE+++RR +E+R + LG  HLDVA ++NNLAV L
Sbjct:  573 RGLYVDAETIYRRIIEIREKQLGSDHLDVAESINNLAVLL 612
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BLAST of mRNA_H-elongata_contig162074.3948.1 vs. uniprot
Match: A0A1F4GZ05_9PROT (Uncharacterized protein n=2 Tax=unclassified Betaproteobacteria TaxID=33809 RepID=A0A1F4GZ05_9PROT)

HSP 1 Score: 48.1 bits (113), Expect = 6.160e-5
Identity = 20/43 (46.51%), Postives = 32/43 (74.42%), Query Frame = 1 
Query:    1 FLFPYKGNHVEAESLHRRALEMRTRALGPSHLDVAATLNNLAV 129
            +++  +G + +AE ++RR+L +  + LGP HLDVA +LNNLAV
Sbjct:   72 YVYQTQGRYADAEPMYRRSLAIYEKVLGPEHLDVADSLNNLAV 114
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig162074.3948.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6P1E889_9GAMM2.260e-657.89Tetratricopeptide repeat-containing protein n=1 Ta... [more]
A0A7S1C9P3_9STRA7.020e-663.16Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A7S1C7G2_9STRA3.470e-560.53Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A1I3XVU7_9DELT3.540e-551.22Tfp pilus assembly protein PilF (Fragment) n=1 Tax... [more]
A0A1D8CZR2_CHLLM4.890e-552.50TIR domain-containing protein n=2 Tax=Chlorobaculu... [more]
A0A1F4GZ05_9PROT6.160e-546.51Uncharacterized protein n=2 Tax=unclassified Betap... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig162074contigH-elongata_contig162074:1056..1226 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size171
Cds size171
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929948.994977-CDS-H-elongata_contig162074:1055..12261622929948.994977-CDS-H-elongata_contig162074:1055..1226Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig162074 1056..1226 +
1691679219.7609472-CDS-H-elongata_contig162074:1055..12261691679219.7609472-CDS-H-elongata_contig162074:1055..1226Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig162074 1056..1226 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig162074.3948.1prot_H-elongata_contig162074.3948.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig162074 1056..1226 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig162074.3948.1

>prot_H-elongata_contig162074.3948.1 ID=prot_H-elongata_contig162074.3948.1|Name=mRNA_H-elongata_contig162074.3948.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=57bp
FLFPYKGNHVEAESLHRRALEMRTRALGPSHLDVAATLNNLAVSLKAQPG
EMGVAV*
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mRNA from alignment at H-elongata_contig162074:1056..1226+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig162074.3948.1 ID=mRNA_H-elongata_contig162074.3948.1|Name=mRNA_H-elongata_contig162074.3948.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=171bp|location=Sequence derived from alignment at H-elongata_contig162074:1056..1226+ (Himanthalia elongata Himel1 dioecious)
TTCTTGTTCCCCTACAAGGGTAATCACGTGGAGGCCGAGAGCTTGCACCG
CCGTGCCCTGGAGATGCGTACCCGGGCGCTGGGGCCAAGCCACCTCGACG
TCGCCGCGACGCTCAACAATCTCGCCGTGTCCCTGAAGGCACAGCCCGGT
GAGATGGGTGTTGCCGTTTGA
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Coding sequence (CDS) from alignment at H-elongata_contig162074:1056..1226+

>mRNA_H-elongata_contig162074.3948.1 ID=mRNA_H-elongata_contig162074.3948.1|Name=mRNA_H-elongata_contig162074.3948.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=342bp|location=Sequence derived from alignment at H-elongata_contig162074:1056..1226+ (Himanthalia elongata Himel1 dioecious)
TTCTTGTTCCCCTACAAGGGTAATCACGTGGAGGCCGAGAGCTTGCACCG
CCGTGCCCTGGAGATGCGTACCCGGGCGCTGGGGCCAAGCCACCTCGACG
TCGCCGCGACGCTCAACAATCTCGCCGTGTCCCTGAAGGCACAGCCCGGT
GAGATGGGTGTTGCCGTTTGATTCTTGTTCCCCTACAAGGGTAATCACGT
GGAGGCCGAGAGCTTGCACCGCCGTGCCCTGGAGATGCGTACCCGGGCGC
TGGGGCCAAGCCACCTCGACGTCGCCGCGACGCTCAACAATCTCGCCGTG
TCCCTGAAGGCACAGCCCGGTGAGATGGGTGTTGCCGTTTGA
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