mRNA_H-elongata_contig162054.3947.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig162054.3947.1
Unique NamemRNA_H-elongata_contig162054.3947.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig162054.3947.1 vs. uniprot
Match: D7G6K1_ECTSI (CRM domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6K1_ECTSI)

HSP 1 Score: 96.3 bits (238), Expect = 2.930e-23
Identity = 60/116 (51.72%), Postives = 72/116 (62.07%), Query Frame = 1 
Query:   13 QELWTRPRKHLMSVGKAGVKPSHVRSLKELVEAHTLVKVKVNIPGADYDKVGLQLCGRQSVSGTDASMGDAENHSTEAFSTASPAP-VSVVTSRAKQNMILFAKAGFLTTLADDRT 357
            +ELW R +K L+SVGK G+KPSHVRSL  L+ AHTLVKVKVNIP AD ++VGL+L G+    G     GD +         ASPA  VSVVT    Q +ILFA   FL + A   T
Sbjct:   23 EELWMRVKKQLISVGKGGIKPSHVRSLNSLIAAHTLVKVKVNIPNADLEEVGLELAGK---GGLALGGGDGDE--------ASPAVGVSVVTVNPNQKVILFANTEFLASQARGET 127
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BLAST of mRNA_H-elongata_contig162054.3947.1 vs. uniprot
Match: A0A6H5JP08_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP08_9PHAE)

HSP 1 Score: 95.1 bits (235), Expect = 5.790e-22
Identity = 57/115 (49.57%), Postives = 70/115 (60.87%), Query Frame = 1 
Query:   13 QELWTRPRKHLMSVGKAGVKPSHVRSLKELVEAHTLVKVKVNIPGADYDKVGLQLCGRQSVSGTDASMGDAENHSTEAFSTASPAPVSVVTSRAKQNMILFAKAGFLTTLADDRT 357
            +ELW R +K L+SVGK G+KPSHVRSL  L+ AHTLVKVKVNIP AD ++VGL+L G+    G  +  GD +  S           VSVVT    Q +ILFA   FL + A   T
Sbjct:  100 EELWMRVKKQLISVGKGGIKPSHVRSLNSLIAAHTLVKVKVNIPNADLEEVGLELVGK---GGLKSGGGDGDEASRAVG-------VSVVTVNPNQKVILFANTDFLASQARGET 204
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BLAST of mRNA_H-elongata_contig162054.3947.1 vs. uniprot
Match: A0A835YHR7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YHR7_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 8.770e-11
Identity = 27/49 (55.10%), Postives = 38/49 (77.55%), Query Frame = 1 
Query:   13 QELWTRPRKHLMSVGKAGVKPSHVRSLKELVEAHTLVKVKVNIPGADYD 159
            +ELW +P+K L+ +G+ GV  SHVRSL +LV+ HT+V+VKVN  GA Y+
Sbjct:   66 EELWRKPKKELLKIGQGGVTASHVRSLTDLVQHHTIVRVKVNTKGASYE 114
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BLAST of mRNA_H-elongata_contig162054.3947.1 vs. uniprot
Match: A0A7S1Y095_9STRA (Hypothetical protein (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1Y095_9STRA)

HSP 1 Score: 51.2 bits (121), Expect = 1.280e-5
Identity = 22/44 (50.00%), Postives = 31/44 (70.45%), Query Frame = 1 
Query:    7 GWQELWTRPRKHLMSVGKAGVKPSHVRSLKELVEAHTLVKVKVN 138
            G ++ W   RK LMS+G  G  P+H  SL++L+EAHT +KVK+N
Sbjct:    7 GVEKAWRFLRKQLMSIGSKGAGPTHGNSLRQLLEAHTTIKVKIN 50
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BLAST of mRNA_H-elongata_contig162054.3947.1 vs. uniprot
Match: A0A7S0WR80_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Chlamydomonas leiostraca TaxID=1034604 RepID=A0A7S0WR80_9CHLO)

HSP 1 Score: 52.0 bits (123), Expect = 2.530e-5
Identity = 32/70 (45.71%), Postives = 42/70 (60.00%), Query Frame = 1 
Query:   16 ELWTRPRKHLMSVGKAGVKPSHVRSLKELVEAHTLVKVKVNIPGADYDKVGLQLCGRQSVSGTDASMGDA 225
            +LW+   + LM +GK G + SH+RSL ELV AHTLVKV++N            L G Q V+G  AS G+A
Sbjct:  122 QLWSACSRALMKLGKGGAQESHIRSLGELVGAHTLVKVQLN----------GDLSGLQQVAGDLASGGNA 181
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig162054.3947.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7G6K1_ECTSI2.930e-2351.72CRM domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JP08_9PHAE5.790e-2249.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YHR7_9STRA8.770e-1155.10Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S1Y095_9STRA1.280e-550.00Hypothetical protein (Fragment) n=1 Tax=Grammatoph... [more]
A0A7S0WR80_9CHLO2.530e-545.71Hypothetical protein (Fragment) n=1 Tax=Chlamydomo... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig162054contigH-elongata_contig162054:574..1198 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRNA-binding, CRM domain
Ec32 orthologEc-05_006480.1
Exons2
Model size357
Cds size357
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929948.9145398-CDS-H-elongata_contig162054:573..7981622929948.9145398-CDS-H-elongata_contig162054:573..798Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig162054 574..798 -
1691679219.744776-CDS-H-elongata_contig162054:573..7981691679219.744776-CDS-H-elongata_contig162054:573..798Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig162054 574..798 -
1622929948.9311478-CDS-H-elongata_contig162054:1066..11981622929948.9311478-CDS-H-elongata_contig162054:1066..1198Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig162054 1067..1198 -
1691679219.7526004-CDS-H-elongata_contig162054:1066..11981691679219.7526004-CDS-H-elongata_contig162054:1066..1198Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig162054 1067..1198 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig162054.3947.1prot_H-elongata_contig162054.3947.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig162054 574..1198 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig162054.3947.1

>prot_H-elongata_contig162054.3947.1 ID=prot_H-elongata_contig162054.3947.1|Name=mRNA_H-elongata_contig162054.3947.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=119bp
MCGWQELWTRPRKHLMSVGKAGVKPSHVRSLKELVEAHTLVKVKVNIPGA
DYDKVGLQLCGRQSVSGTDASMGDAENHSTEAFSTASPAPVSVVTSRAKQ
NMILFAKAGFLTTLADDRT
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mRNA from alignment at H-elongata_contig162054:574..1198-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig162054.3947.1 ID=mRNA_H-elongata_contig162054.3947.1|Name=mRNA_H-elongata_contig162054.3947.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=625bp|location=Sequence derived from alignment at H-elongata_contig162054:574..1198- (Himanthalia elongata Himel1 dioecious)
ATGTGCGGCTGGCAGGAGCTATGGACAAGACCAAGGAAACACCTCATGAG
TGTGGGAAAGGCTGGGGTCAAGCCGAGTCACGTGCGCTCGCTCAAGGAGC
TTGTCGAGGCACACACCCTGGTGAAAGTTAAGGTGCTAATACCGTCTCCC
CAAGAGTCGGCACTCTAATAAAATTATTCTCTCAAACGAGCGACAGCCTC
TACTAGCAAATATAGCACCTCAATTTTGTATATTTTACAGGGAGGCAAGT
AGTGGGCGCCATTGTCTTTTGCCGGCGCCATTGTCTGAACAGGGTATACA
AATAAAATGCTGCTGCGAGCAGAATACACTCGAGTTGCGCGTGACACGTT
ACGTAAGGTGATTAACTCATTGCTCAATCACACGATCGCACATCGCCCAG
GTCAACATACCCGGCGCGGACTACGACAAGGTCGGCCTGCAGCTGTGCGG
AAGGCAGAGCGTTAGCGGTACCGATGCTTCAATGGGGGATGCAGAAAATC
ACTCAACAGAGGCGTTTTCGACGGCCAGCCCAGCGCCAGTTTCTGTCGTC
ACGAGCCGCGCGAAGCAGAACATGATCCTTTTCGCCAAGGCGGGGTTCTT
GACCACGCTCGCCGATGACAGAACA
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Coding sequence (CDS) from alignment at H-elongata_contig162054:574..1198-

>mRNA_H-elongata_contig162054.3947.1 ID=mRNA_H-elongata_contig162054.3947.1|Name=mRNA_H-elongata_contig162054.3947.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=714bp|location=Sequence derived from alignment at H-elongata_contig162054:574..1198- (Himanthalia elongata Himel1 dioecious)
ATGTGCGGCTGGCAGGAGCTATGGACAAGACCAAGGAAACACCTCATGAG
TGTGGGAAAGGCTGGGGTCAAGCCGAGTCACGTGCGCTCGCTCAAGGAGC
TTGTCGAGGCACACACCCTGGTGAAAGTTAAGATGTGCGGCTGGCAGGAG
CTATGGACAAGACCAAGGAAACACCTCATGAGTGTGGGAAAGGCTGGGGT
CAAGCCGAGTCACGTGCGCTCGCTCAAGGAGCTTGTCGAGGCACACACCC
TGGTGAAAGTTAAGGTCAACATACCCGGCGCGGACTACGACAAGGTCGGC
CTGCAGCTGTGCGGAAGGCAGAGCGTTAGCGGTACCGATGCTTCAATGGG
GGATGCAGAAAATCACTCAACAGAGGCGTTTTCGACGGCCAGCCCAGCGC
CAGTTTCTGTCGTCACGAGCCGCGCGAAGCAGAACATGATCCTTTTCGCC
AAGGCGGGGTTCTTGACCACGCTCGCCGATGACAGAACAGTCAACATACC
CGGCGCGGACTACGACAAGGTCGGCCTGCAGCTGTGCGGAAGGCAGAGCG
TTAGCGGTACCGATGCTTCAATGGGGGATGCAGAAAATCACTCAACAGAG
GCGTTTTCGACGGCCAGCCCAGCGCCAGTTTCTGTCGTCACGAGCCGCGC
GAAGCAGAACATGATCCTTTTCGCCAAGGCGGGGTTCTTGACCACGCTCG
CCGATGACAGAACA
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