mRNA_H-elongata_contig161888.3942.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig161888.3942.1
Unique NamemRNA_H-elongata_contig161888.3942.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig161888.3942.1 vs. uniprot
Match: A0A0G4EGA8_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4EGA8_VITBC)

HSP 1 Score: 134 bits (336), Expect = 4.070e-35
Identity = 58/91 (63.74%), Postives = 70/91 (76.92%), Query Frame = 1 
Query:    1 GKDLSFVDLMYTPFLERMSASLPYYKGLRVRGNPRWPFISRWFDAMDTREVYRGAKSDYYTHCHDLPPQIGGCRVEAEGVPFKDEIDGKDG 273
            G D+S VDLMYT FLERM+ASLPY+KGL VRG  RWP + RWFDAM++R  ++  KSDYYTHC DLPPQ+G C    EG PF+  IDG++G
Sbjct:  266 GDDISLVDLMYTSFLERMAASLPYFKGLVVRGEGRWPNVERWFDAMESRPTFKYIKSDYYTHCQDLPPQVGPCGKLLEGAPFRATIDGQNG 356
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BLAST of mRNA_H-elongata_contig161888.3942.1 vs. uniprot
Match: A0A7S0M898_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0M898_9CRYP)

HSP 1 Score: 132 bits (333), Expect = 4.180e-35
Identity = 55/91 (60.44%), Postives = 66/91 (72.53%), Query Frame = 1 
Query:    1 GKDLSFVDLMYTPFLERMSASLPYYKGLRVRGNPRWPFISRWFDAMDTREVYRGAKSDYYTHCHDLPPQIGGCRVEAEGVPFKDEIDGKDG 273
            G + S VD MY PFLERM+ASLPYYKGL +RGNPRWP ++ WFDAM++   + G + DYYTHCHDLPPQIG C       P+ D IDG+ G
Sbjct:  304 GSETSMVDCMYAPFLERMAASLPYYKGLVIRGNPRWPHVNAWFDAMESLPSFSGIQGDYYTHCHDLPPQIGNCFSHPSAQPYADAIDGRGG 394
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BLAST of mRNA_H-elongata_contig161888.3942.1 vs. uniprot
Match: A0A7S0DPE6_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0DPE6_9EUKA)

HSP 1 Score: 130 bits (327), Expect = 4.540e-35
Identity = 54/84 (64.29%), Postives = 67/84 (79.76%), Query Frame = 1 
Query:   13 SFVDLMYTPFLERMSASLPYYKGLRVRGNPRWPFISRWFDAMDTREVYRGAKSDYYTHCHDLPPQIGGCRVEAEGVPFKDEIDG 264
            S VD MY PFLERM+AS+PYYKGL  RGNPRW +I++WFDAM++R  ++G +SDYYTHCHDLPPQIGG +   +   + DEIDG
Sbjct:  145 SMVDCMYAPFLERMAASVPYYKGLIFRGNPRWSYINKWFDAMESRPSFKGIQSDYYTHCHDLPPQIGGAQFSGDHKRYTDEIDG 228
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BLAST of mRNA_H-elongata_contig161888.3942.1 vs. uniprot
Match: A0A250X2Q2_9CHLO (GST N-terminal domain-containing protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250X2Q2_9CHLO)

HSP 1 Score: 130 bits (328), Expect = 8.780e-35
Identity = 53/91 (58.24%), Postives = 68/91 (74.73%), Query Frame = 1 
Query:    1 GKDLSFVDLMYTPFLERMSASLPYYKGLRVRGNPRWPFISRWFDAMDTREVYRGAKSDYYTHCHDLPPQIGGCRVEAEGVPFKDEIDGKDG 273
            G+D+S VD+ +TP LER +ASL YYKG  +RG  RWP I RWFDAM+ R+ Y G +SDYYTHCHDLPPQ+GGC + ++G      +DG+DG
Sbjct:  115 GQDISLVDITFTPMLERAAASLAYYKGYYMRGQGRWPAIDRWFDAMEQRDTYMGTRSDYYTHCHDLPPQLGGCEMNSDGKAVSAMLDGRDG 205
[Close]
BLAST of mRNA_H-elongata_contig161888.3942.1 vs. uniprot
Match: A0A7S3Z860_9EUKA (Hypothetical protein n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3Z860_9EUKA)

HSP 1 Score: 131 bits (329), Expect = 4.100e-34
Identity = 54/89 (60.67%), Postives = 68/89 (76.40%), Query Frame = 1 
Query:    1 GKDLSFVDLMYTPFLERMSASLPYYKGLRVRGNPRWPFISRWFDAMDTREVYRGAKSDYYTHCHDLPPQIGGCRVEAEGVPFKDEIDGK 267
            GKD++ VD M+ PFLERM+AS+PYYKG+  R NPRW  I+ WF+AM+TR  +RG +SDYYTH HDLPPQ+GGC+       + DEIDGK
Sbjct:  259 GKDVTLVDFMFAPFLERMAASMPYYKGIVFRNNPRWGRITEWFEAMETRPSFRGIQSDYYTHVHDLPPQVGGCQFSGNHQKYTDEIDGK 347
[Close]
BLAST of mRNA_H-elongata_contig161888.3942.1 vs. uniprot
Match: A0A7S3B130_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3B130_9EUKA)

HSP 1 Score: 121 bits (304), Expect = 1.410e-33
Identity = 53/91 (58.24%), Postives = 62/91 (68.13%), Query Frame = 1 
Query:    1 GKDLSFVDLMYTPFLERMSASLPYYKGLRVRGNPRWPFISRWFDAMDTREVYRGAKSDYYTHCHDLPPQIGGCRVEAEGVPFKDEIDGKDG 273
            G +LS VD M+ PFLERM+ASLPYYK L +R  P WP + RWF AM+ R  YR  +SD+YTH HDLPPQ+G C    E   F D IDG DG
Sbjct:   41 GSELSLVDCMFAPFLERMAASLPYYKALPLRRQPEWPCLERWFLAMEARPSYRHIQSDFYTHVHDLPPQVGRCAAVPEAAAFADAIDGTDG 131
[Close]
BLAST of mRNA_H-elongata_contig161888.3942.1 vs. uniprot
Match: A0A7S1SG57_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1SG57_9CHLO)

HSP 1 Score: 127 bits (320), Expect = 2.740e-33
Identity = 56/91 (61.54%), Postives = 66/91 (72.53%), Query Frame = 1 
Query:    1 GKDLSFVDLMYTPFLERMSASLPYYKGLRVRGNPRWPFISRWFDAMDTREVYRGAKSDYYTHCHDLPPQIGGCRVEAEGVPFKDEIDGKDG 273
            G D+S VD+ YTPFLERM ASL YYKGLRVR   RWP +  WFDAM+TR  Y G +SD+YTH HDLPPQ+GGC    +G   +  IDG+DG
Sbjct:  276 GADISLVDMNYTPFLERMDASLLYYKGLRVRDPLRWPAVCAWFDAMETRPTYLGTRSDFYTHVHDLPPQLGGCAPHPDGEAARAAIDGEDG 366
[Close]
BLAST of mRNA_H-elongata_contig161888.3942.1 vs. uniprot
Match: A0A7S4GL72_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4GL72_9EUGL)

HSP 1 Score: 127 bits (318), Expect = 1.160e-32
Identity = 52/90 (57.78%), Postives = 66/90 (73.33%), Query Frame = 1 
Query:    1 GKDLSFVDLMYTPFLERMSASLPYYKGLRVRGNPRWPFISRWFDAMDTREVYRGAKSDYYTHCHDLPPQIGGCRVEAEGVPFKDEIDGKD 270
            G     VD+M+ PFLER++AS+PY+KGL VR NPRWP I+ W+DAMD R  Y   KSD+YTHCHDLPPQ+GGC   A+    + E+DG+D
Sbjct:  233 GDGFGIVDIMFAPFLERIAASIPYFKGLPVRRNPRWPHINAWYDAMDRRPAYAPTKSDFYTHCHDLPPQLGGCHSAADAKRCQAEVDGQD 322
[Close]
BLAST of mRNA_H-elongata_contig161888.3942.1 vs. uniprot
Match: A0A7S3VY26_9SPIT (Hypothetical protein n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3VY26_9SPIT)

HSP 1 Score: 126 bits (317), Expect = 2.140e-32
Identity = 56/92 (60.87%), Postives = 67/92 (72.83%), Query Frame = 1 
Query:    1 GKDLSFVDLMYTPFLERMSASLPYYKGLRVRGNPRWPFISRWFDAMDTREVYRGAKSDYYTHCHDLPPQIGGCRVEA-EGVPFKDEIDGKDG 273
            GK+LS VD M+ PFLERM+ASLPYYKGL +R  P+WP +  WF AM+++  YR   SD+YTHCHDLPPQIG C+V   E   F D IDG DG
Sbjct:  260 GKELSMVDCMFAPFLERMAASLPYYKGLPIRRQPQWPNVEAWFLAMESKPSYRNIASDFYTHCHDLPPQIGRCQVSGPEAQAFADRIDGADG 351
[Close]
BLAST of mRNA_H-elongata_contig161888.3942.1 vs. uniprot
Match: A0A835SFF9_CHLIN (Uncharacterized protein n=4 Tax=Chlamydomonas TaxID=3052 RepID=A0A835SFF9_CHLIN)

HSP 1 Score: 125 bits (314), Expect = 4.070e-32
Identity = 52/91 (57.14%), Postives = 63/91 (69.23%), Query Frame = 1 
Query:    1 GKDLSFVDLMYTPFLERMSASLPYYKGLRVRGNPRWPFISRWFDAMDTREVYRGAKSDYYTHCHDLPPQIGGCRVEAEGVPFKDEIDGKDG 273
            G D+S VD+ + P LER +ASL YYKG  +RG  RWP + RWF AM+TR  Y G +SDYYTH HDLPPQ+GGC +  EG P    +DG DG
Sbjct:  223 GSDISLVDITFAPMLERAAASLTYYKGFHLRGQGRWPAVDRWFAAMETRPTYLGTRSDYYTHAHDLPPQLGGCGMHEEGEPLAAALDGTDG 313
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig161888.3942.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0G4EGA8_VITBC4.070e-3563.74Uncharacterized protein n=1 Tax=Vitrella brassicaf... [more]
A0A7S0M898_9CRYP4.180e-3560.44Hypothetical protein (Fragment) n=1 Tax=Cryptomona... [more]
A0A7S0DPE6_9EUKA4.540e-3564.29Hypothetical protein (Fragment) n=1 Tax=Amorphochl... [more]
A0A250X2Q2_9CHLO8.780e-3558.24GST N-terminal domain-containing protein n=1 Tax=C... [more]
A0A7S3Z860_9EUKA4.100e-3460.67Hypothetical protein n=1 Tax=Lotharella globosa Ta... [more]
A0A7S3B130_9EUKA1.410e-3358.24Hypothetical protein (Fragment) n=1 Tax=Haptolina ... [more]
A0A7S1SG57_9CHLO2.740e-3361.54Hypothetical protein (Fragment) n=1 Tax=Tetraselmi... [more]
A0A7S4GL72_9EUGL1.160e-3257.78Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
A0A7S3VY26_9SPIT2.140e-3260.87Hypothetical protein n=1 Tax=Strombidinopsis acumi... [more]
A0A835SFF9_CHLIN4.070e-3257.14Uncharacterized protein n=4 Tax=Chlamydomonas TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig161888contigH-elongata_contig161888:577..1138 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score117.5
Seed ortholog evalue3e-24
Seed eggNOG ortholog227086.JGI_V11_71920
KEGG rclassRC00004,RC00069,RC00840,RC00948,RC01704,RC01705,RC01706,RC01758,RC01759,RC01765,RC01767,RC01769,RC02243,RC02527,RC02939,RC02940,RC02942,RC02943,RC02944
KEGG koko:K00799
KEGG TC1.A.12.2.2,1.A.12.3.2
KEGG ReactionR03522,R07002,R07003,R07004,R07023,R07024,R07025,R07026,R07069,R07070,R07083,R07084,R07091,R07092,R07093,R07094,R07100,R07113,R07116,R08280,R09409,R11905
KEGG Pathwayko00480,ko00980,ko00982,ko00983,ko01524,ko05200,ko05204,ko05225,ko05418,map00480,map00980,map00982,map00983,map01524,map05200,map05204,map05225,map05418
EggNOG free text desc.chloride channel activity
EggNOG OGsKOG1422@1,KOG1422@2759
EC2.5.1.18
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko02000
Hectar predicted targeting categoryother localisation
Exons2
Model size273
Cds size246
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig161888.3942.1prot_H-elongata_contig161888.3942.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig161888 577..1111 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929948.4026268-CDS-H-elongata_contig161888:576..7271622929948.4026268-CDS-H-elongata_contig161888:576..727Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig161888 577..727 -
1691679219.5667078-CDS-H-elongata_contig161888:576..7271691679219.5667078-CDS-H-elongata_contig161888:576..727Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig161888 577..727 -
1622929948.4160461-CDS-H-elongata_contig161888:1016..11111622929948.4160461-CDS-H-elongata_contig161888:1016..1111Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig161888 1017..1111 -
1691679219.5806258-CDS-H-elongata_contig161888:1016..11111691679219.5806258-CDS-H-elongata_contig161888:1016..1111Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig161888 1017..1111 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929948.434412-UTR-H-elongata_contig161888:1111..11381622929948.434412-UTR-H-elongata_contig161888:1111..1138Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig161888 1112..1138 -
1691679219.5980673-UTR-H-elongata_contig161888:1111..11381691679219.5980673-UTR-H-elongata_contig161888:1111..1138Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig161888 1112..1138 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig161888.3942.1

>prot_H-elongata_contig161888.3942.1 ID=prot_H-elongata_contig161888.3942.1|Name=mRNA_H-elongata_contig161888.3942.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=82bp
MYTPFLERMSASLPYYKGLRVRGNPRWPFISRWFDAMDTREVYRGAKSDY
YTHCHDLPPQIGGCRVEAEGVPFKDEIDGKDG
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mRNA from alignment at H-elongata_contig161888:577..1138-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig161888.3942.1 ID=mRNA_H-elongata_contig161888.3942.1|Name=mRNA_H-elongata_contig161888.3942.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=562bp|location=Sequence derived from alignment at H-elongata_contig161888:577..1138- (Himanthalia elongata Himel1 dioecious)
GGGAAAGACCTATCGTTCGTCGATCTCATGTACACCCCTTTCCTCGAGCG
CATGAGTGCGTCCCTCCCCTACTACAAGGGTCTACGAGTCCGGGGCAATC
CAAGATGGCCATTCATCAGCAGGTGCCACGCGAGAGGTCTGAGATGTTTC
GGTCGGGCGGCTTCTTCCTTTCCTTGCTTCCTTGGAATCGCGACCAATCG
CGACCTGACGTTTTTCTAGAACTGTGTATCGGCGGCATGATTTTATACTC
CCTCGAGGTTGGGTGACATTGTTGCGCTTTTTGTCCTCTTCGTCCCCGCG
AGAGGGCACGCCGCTGCTTTTTGCGTGAACTCCGTGCGCCACCTAATCGA
CGGCGTCTTTCGCTACTATACATGGGTGAAGAATACCTCCAGTTTACGCC
GCGATGTGCAGATGGTTCGACGCCATGGACACGCGCGAGGTTTACCGCGG
AGCCAAGTCGGACTACTACACCCACTGCCACGACCTGCCCCCGCAGATCG
GGGGTTGCCGTGTGGAGGCGGAGGGGGTACCGTTCAAGGACGAGATTGAC
GGCAAGGACGGT
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Coding sequence (CDS) from alignment at H-elongata_contig161888:577..1138-

>mRNA_H-elongata_contig161888.3942.1 ID=mRNA_H-elongata_contig161888.3942.1|Name=mRNA_H-elongata_contig161888.3942.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=492bp|location=Sequence derived from alignment at H-elongata_contig161888:577..1138- (Himanthalia elongata Himel1 dioecious)
ATGTACACCCCTTTCCTCGAGCGCATGAGTGCGTCCCTCCCCTACTACAA
GGGTCTACGAGTCCGGGGCAATCCAAGATGGCCATTCATCAGCAGATGTA
CACCCCTTTCCTCGAGCGCATGAGTGCGTCCCTCCCCTACTACAAGGGTC
TACGAGTCCGGGGCAATCCAAGATGGCCATTCATCAGCAGATGGTTCGAC
GCCATGGACACGCGCGAGGTTTACCGCGGAGCCAAGTCGGACTACTACAC
CCACTGCCACGACCTGCCCCCGCAGATCGGGGGTTGCCGTGTGGAGGCGG
AGGGGGTACCGTTCAAGGACGAGATTGACGGCAAGGACGGTATGGTTCGA
CGCCATGGACACGCGCGAGGTTTACCGCGGAGCCAAGTCGGACTACTACA
CCCACTGCCACGACCTGCCCCCGCAGATCGGGGGTTGCCGTGTGGAGGCG
GAGGGGGTACCGTTCAAGGACGAGATTGACGGCAAGGACGGT
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