mRNA_H-elongata_contig16187.3940.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig16187.3940.1
Unique NamemRNA_H-elongata_contig16187.3940.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig16187.3940.1 vs. uniprot
Match: D7FTW0_ECTSI (RGS domain-containing protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTW0_ECTSI)

HSP 1 Score: 205 bits (521), Expect = 1.800e-54
Identity = 132/302 (43.71%), Postives = 179/302 (59.27%), Query Frame = 1 
Query:    1 RKVDDLFNISTELTVVTGLFVIYAVGQECLYYYSSWG----MTWIGDFLPFVISIAVFWASVVDPQIRLAYDDLAAPKRNNANRVLLSVIREYRCTAQSASSGFSSGVSGDSEDEGEGERRSNSLQ--GRRGQETKVTEEVWNFERLASTPLLAAAFEDYARRALCHESVLFLSEVSRYQGGYYS----GSSDTPGTSQYSTFSRITDTFIRDGSCEEVNISHTDKKILVNVSENGREKFEQMDENERRWVFTKAYVEVKNMLEANLLLRFLQSDQFQSVRAQRENVTAMTMSPC*RRMLMS 876
            R VDDLF+ISTEL +VT    +  + QE       WG      W+ + L  +  I +F  S+V P  RLA D  AA +RN ANRVL      +                 D+   G+ ER  +  +  GRR +  K   ++W+FER+  TPLLA AFEDY++RALCHES LFLSEVSRYQ G Y+     SS +   +Q+ TF  ITDTFI+ GS EEVNIS  ++K+++ +   G E FE +++ ERR +F +AY+ VK MLEANLLLRFL +D+F+S+  Q+EN   M  SP   R+++S
Sbjct:  220 RNVDDLFSISTELIIVTATIGLITIVQEID---GLWGGCYERRWLANNLSVLFMIVLFGVSIVAPLRRLASDPFAATRRNYANRVLPDHTEPHSIGGNRL----------DAVRRGQSERGDDRGRDGGRRSRSHKQDIDLWDFERIVRTPLLAVAFEDYSKRALCHESFLFLSEVSRYQNGDYATTIRASSGSSFPTQFGTFCYITDTFIKAGSPEEVNISDKERKLILALYHKGEELFEDVNDAERRMIFRRAYLAVKRMLEANLLLRFLNTDRFKSLEMQKENTQVMVDSPPQARVVVS 508
[Close]
BLAST of mRNA_H-elongata_contig16187.3940.1 vs. uniprot
Match: D7G2T7_ECTSI (RGS domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2T7_ECTSI)

HSP 1 Score: 199 bits (505), Expect = 4.750e-52
Identity = 155/389 (39.85%), Postives = 196/389 (50.39%), Query Frame = 1 
Query:    1 RKVDDLFNISTELTVVTGLFVIYAVGQECLYYYSSWG----MTWIGDFLPFVISIAVFWASVVDPQIRLAYDDLAAPKRNNANRVLLSVIREYRCTAQSASSGFSSGVSGD-------SEDEG---EGE----------------------------------------------------------RRSNSLQ------------------------------GRRGQETKVTEEVWNFERLASTPLLAAAFEDYARRALCHESVLFLSEVSRYQGGYYSGSSDTP---GTSQYSTFSRITDTFIRDGSCEEVNISHTDKKILVNVSENGREKFEQMDENERRWVFTKAYVEVKNMLEANLLLRFLQSDQFQSVRAQRENVTAMTMSP 852
            R VDDLFNIS EL +VT   V  AV Q+     + WG      W+G+ +   I+  +F  S+VDP  RLA D LAA KRN A+RVLLS  R    +    +SG SSG S D       SE+E    EG+                                                          ++S+S+                               G RG+  +   EVWNFERLA TPLLA AFEDY++RALCHESVLFL+EVSRYQ   Y+  +        SQ+ TF  IT+TFI+ GS EEVNIS  DKK ++ + + G E FE ++E ERR +F +AY+EVK+MLEANLL RFL +D+F+SVR QRENV  M  SP
Sbjct:  137 RNVDDLFNISKELLLVTVAIVCLAVVQKAA---AEWGGVYEQRWVGNNISIFIAAVLFGISIVDPLRRLAMDPLAATKRNYADRVLLS--RTAPDSTVRTASGVSSGRSRDPSRIRANSEEEARLEEGDLGGVLDKDETTTAGDVSNVVASAVVGNGVITTSTADTNDAVAAGTWNEREPINTSVFTKQSSSVSNDTSIGGNRRDVVQRGPRERAFFRGRRGGGGGRGRPEREEMEVWNFERLARTPLLAVAFEDYSKRALCHESVLFLTEVSRYQHEDYATPTKDAIRSSPSQFGTFCYITNTFIKAGSPEEVNISDADKKRILELYQKGEEHFEDVNEEERRLIFGRAYLEVKSMLEANLLRRFLNTDRFKSVRMQRENVQTMMDSP 520
[Close]
BLAST of mRNA_H-elongata_contig16187.3940.1 vs. uniprot
Match: D7G2T5_ECTSI (RGS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2T5_ECTSI)

HSP 1 Score: 179 bits (454), Expect = 1.670e-47
Identity = 98/155 (63.23%), Postives = 119/155 (76.77%), Query Frame = 1 
Query:  400 EVWNFERLASTPLLAAAFEDYARRALCHESVLFLSEVSRYQGGYYSGS----SDTPGTSQYSTFSRITDTFIRDGSCEEVNISHTDKKILVNVSENGREKFEQMDENERRWVFTKAYVEVKNMLEANLLLRFLQSDQFQSVRAQRENVTAMTMSP 852
            EVWNFERLA TPLLAAAFEDY++RALCHESVLFLSEVSRYQ   Y+ S    S++   +Q+ TF  ITDTFI+ GS EEVNIS  DKK +++V   G E F  ++E +RR +F+ AY+EVK+MLEANLL RFL +D+F+SVR QRENV AM  SP
Sbjct:  118 EVWNFERLARTPLLAAAFEDYSKRALCHESVLFLSEVSRYQSDDYATSARPSSESSCPTQFGTFCYITDTFIKGGSPEEVNISDADKKAILDVYHKGEESFGGVNEEDRRMIFSPAYLEVKSMLEANLLRRFLNTDRFKSVRMQRENVQAMMDSP 272
[Close]
BLAST of mRNA_H-elongata_contig16187.3940.1 vs. uniprot
Match: D7G2T8_ECTSI (RGS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2T8_ECTSI)

HSP 1 Score: 182 bits (462), Expect = 1.740e-45
Identity = 96/153 (62.75%), Postives = 121/153 (79.08%), Query Frame = 1 
Query:  400 EVWNFERLASTPLLAAAFEDYARRALCHESVLFLSEVSRYQGGYYSGSSDTPGT--SQYSTFSRITDTFIRDGSCEEVNISHTDKKILVNVSENGREKFEQMDENERRWVFTKAYVEVKNMLEANLLLRFLQSDQFQSVRAQRENVTAMTMSP 852
            EVW+FERL  TPLLAAAFEDY++RALCHESVLFLSEVSRYQ   Y+  ++  GT  +Q+ TF  ITDTFI+ G+ EEVNIS  D+K+++ + + G E FE+++E ERR VF ++Y+EVK+MLEANLL RFL +DQF+SVR QRENV AM  SP
Sbjct:  459 EVWDFERLGRTPLLAAAFEDYSKRALCHESVLFLSEVSRYQNDDYATPTNAAGTCPTQFGTFCYITDTFIKAGAPEEVNISDKDRKLILELYQKGEESFEEVNEEERRMVFKRSYLEVKSMLEANLLRRFLNTDQFKSVRKQRENVQAMMDSP 611
[Close]
BLAST of mRNA_H-elongata_contig16187.3940.1 vs. uniprot
Match: A0A6H5L7K1_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7K1_9PHAE)

HSP 1 Score: 175 bits (444), Expect = 4.310e-44
Identity = 142/371 (38.27%), Postives = 175/371 (47.17%), Query Frame = 1 
Query:    4 KVDDLFNISTELTVVTGLFVIYAVGQECLYYYSSWGMTWIGDFLPFVISIAVFWASVVDPQIRLAYDDLAAPKRNNANRVLLS--------VIREYRCTA---------QSASSGFSSGVSGDSEDEGEGE--------------------------------------------------RRSNSLQGRRG----------------QETKVTEEVWNFERLASTPLLAAAFEDYARRALCHESVLFLSEVSRYQGGYYSGSSDTPGTSQYSTFSRITDTFIRDGSCEEVNISHTDKKILVNVSENGREKFEQMDENERRWVFTKAYVEVKNMLEANLLLRFLQSDQFQSVRAQR-----ENVTAMTMSP 852
            KVDDLFNIS EL +VT LF+I A+G +C  YY      W G  L F I+ AVF  SVV P   LA D LA  K+   +R +L+        V    + TA         + AS     G+ GD  DE + +                                                  +  N    R G                   +   E W+FERLA  PL+AAAFE Y R+ALCHE VLFL EVSRYQ G +   +   G SQY  F RI D FIR GS EEV+IS  ++K L+ ++  G   FE   E ERR VF +AY+EVK MLE NLL RFLQ+D+F+SVRAQR     EN   +  SP
Sbjct:  102 KVDDLFNISRELIIVTILFLILAIGIKCGLYYEV--DMWTGGNLNFFITAAVFGVSVVGPLRLLAVDPLAGSKQRCMDRAVLARRDTRSEDVSYSAKATADIRGSSRAVRVASRKLEEGLYGDGVDENDDDGCDTTPXXXXXXXXXXXXXXXATSLYDEPPPANLSPSPSPGDPGAGNWQYQGINFCTSRGGGAGXXXXXXXXXXXXXXXXEEMVEAWDFERLARKPLVAAAFEAYTRKALCHECVLFLREVSRYQSGDFPEPAGLSGPSQYQAFCRINDVFIRPGSREEVSISGVERKRLMELAHKGDVLFEAGTEEERRLVFARAYLEVKTMLEDNLLRRFLQTDRFKSVRAQRRMMQRENFPTVAASP 470
[Close]
BLAST of mRNA_H-elongata_contig16187.3940.1 vs. uniprot
Match: D7FTW2_ECTSI (RGS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTW2_ECTSI)

HSP 1 Score: 165 bits (418), Expect = 1.600e-41
Identity = 91/174 (52.30%), Postives = 122/174 (70.11%), Query Frame = 1 
Query:  367 GRRGQETKVTEEVWNFERLASTPLLAAAFEDYARRALCHESVLFLSEVSRYQGGYYS----GSSDTPGTSQYSTFSRITDTFIRDGSCEEVNISHTDKKILVNVSENGREKFEQMDENERRWVFTKAYVEVKNMLEANLLLRFLQSDQFQSVRAQRENVTAMTMSPC*RRMLMS 876
            GRR +  K   ++W+FER+  TPLLA AFEDY++RALCHES LFLSEVSRYQ G Y+     SS +   +Q+ TF  ITDTFI+ GS EEVNIS  ++K+++ +   G E FE ++  ERR +F +AY+ VK MLEANLLLRFL +D+F+S+  Q+EN   M  SP   R+++S
Sbjct:  196 GRRSRSHKQDIDLWDFERIVRTPLLAVAFEDYSKRALCHESFLFLSEVSRYQNGDYATTKRASSGSSFPTQFGTFCYITDTFIKAGSHEEVNISDKERKLILALYHKGEELFEDVNVEERRMIFRRAYLAVKRMLEANLLLRFLNTDRFKSLEMQKENTQVMVDSPPQARVVVS 369
[Close]
BLAST of mRNA_H-elongata_contig16187.3940.1 vs. uniprot
Match: A0A6H5LEP9_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LEP9_9PHAE)

HSP 1 Score: 166 bits (421), Expect = 1.880e-40
Identity = 93/154 (60.39%), Postives = 118/154 (76.62%), Query Frame = 1 
Query:  400 EVWNFERLASTPLLAAAFEDYARRALCHESVLFLSEVSRYQGGYYSGSSDTP-GT--SQYSTFSRITDTFIRDGSCEEVNISHTDKKILVNVSENGREKFEQMDENERRWVFTKAYVEVKNMLEANLLLRFLQSDQFQSVRAQRENVTAMTMSP 852
            EVW+FERL  TPLLAAAFEDY++RALCHESVLFLSEVSRYQ   Y+  ++   GT  +Q+ TF  ITDTFI+ G+ EEVNI    +K+++ + + G E FE+++E ERR VF ++Y+ VK+MLEANLL RFL +DQF+SVR QRENV AM  SP
Sbjct:  388 EVWDFERLGRTPLLAAAFEDYSKRALCHESVLFLSEVSRYQNDDYATPTNAAAGTCPTQFGTFCFITDTFIKAGAPEEVNI----RKLILELYQKGEESFEEVNEEERRMVFKRSYLAVKSMLEANLLRRFLNTDQFKSVRKQRENVQAMMDSP 537
[Close]
BLAST of mRNA_H-elongata_contig16187.3940.1 vs. uniprot
Match: A0A6H5JE98_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE98_9PHAE)

HSP 1 Score: 166 bits (419), Expect = 8.510e-40
Identity = 89/166 (53.61%), Postives = 118/166 (71.08%), Query Frame = 1 
Query:  367 GRRGQETKVTEEVWNFERLASTPLLAAAFEDYARRALCHESVLFLSEVSRYQGGYYS----GSSDTPGTSQYSTFSRITDTFIRDGSCEEVNISHTDKKILVNVSENGREKFEQMDENERRWVFTKAYVEVKNMLEANLLLRFLQSDQFQSVRAQRENVTAMTMSP 852
            GRR +  K   ++W+FER+  TPLLA AFEDY+++ALCHES LFLSEVSRYQ G Y+     SS +   +Q+ TF  ITDTFI+ GS EEVNIS  ++K+++ +   G E FE ++E ERR +F +AY+ VK MLEANLLLRFL +D+F+SV  Q+E+   M  SP
Sbjct:  438 GRRSRSHKQDIDIWDFERIVRTPLLAVAFEDYSKKALCHESFLFLSEVSRYQNGDYAMATRASSGSSCPTQFGTFCYITDTFIKAGSPEEVNISDKERKLILALYHKGEELFEDVNEEERRMIFRRAYLAVKRMLEANLLLRFLNTDRFKSVEMQKEDTQVMVDSP 603
[Close]
BLAST of mRNA_H-elongata_contig16187.3940.1 vs. uniprot
Match: D7FTV9_ECTSI (RGS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTV9_ECTSI)

HSP 1 Score: 140 bits (354), Expect = 1.640e-35
Identity = 83/155 (53.55%), Postives = 102/155 (65.81%), Query Frame = 1 
Query:  400 EVWNFERLASTPLLAAAFEDYARRALCHESVLFLSEVSRYQGGYYS----GSSDTPGTSQYSTFSRITDTFIRDGSCEEVNISHTDKKILVNVSENGREKFEQMDENERRWVFTKAYVEVKNMLEANLLLRFLQSDQFQSVRAQRENVTAMTMSP 852
            EVW+FER+ASTPLLAAAFEDY++RALCHESVLFLSEVSRYQ   Y      SS +    Q+ +F  ITDTFI+ GS EEVNI                           R +F++A+ +VKNMLEANL+LRFL +D+F++VR QREN+ AM  SP
Sbjct:    2 EVWDFERIASTPLLAAAFEDYSKRALCHESVLFLSEVSRYQNNNYPMPTRASSASSPRIQFGSFCYITDTFIKAGSPEEVNI---------------------------RMIFSRAHRDVKNMLEANLVLRFLNTDRFKNVRVQRENMKAMMGSP 129
[Close]
BLAST of mRNA_H-elongata_contig16187.3940.1 vs. uniprot
Match: D7FTW1_ECTSI (RGS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTW1_ECTSI)

HSP 1 Score: 143 bits (361), Expect = 5.440e-33
Identity = 84/155 (54.19%), Postives = 102/155 (65.81%), Query Frame = 1 
Query:  400 EVWNFERLASTPLLAAAFEDYARRALCHESVLFLSEVSRYQGGYYS----GSSDTPGTSQYSTFSRITDTFIRDGSCEEVNISHTDKKILVNVSENGREKFEQMDENERRWVFTKAYVEVKNMLEANLLLRFLQSDQFQSVRAQRENVTAMTMSP 852
            EVW+FER+ASTPLLAAAFEDY++RALCHESVLFLSEVSRYQ   Y      SS +    Q+ +F  ITDTFI+ GS EEVNI                           R +F++AY +VKNMLEANL+LRFL +D+F++VR QREN+ AM  SP
Sbjct:  338 EVWDFERIASTPLLAAAFEDYSKRALCHESVLFLSEVSRYQNNNYPMPTRASSASSPRIQFGSFCYITDTFIKAGSSEEVNI---------------------------RMIFSRAYRDVKNMLEANLVLRFLNTDRFKNVRVQRENMKAMMGSP 465
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig16187.3940.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
D7FTW0_ECTSI1.800e-5443.71RGS domain-containing protein n=2 Tax=Ectocarpus s... [more]
D7G2T7_ECTSI4.750e-5239.85RGS domain-containing protein n=2 Tax=Ectocarpus T... [more]
D7G2T5_ECTSI1.670e-4763.23RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G2T8_ECTSI1.740e-4562.75RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5L7K1_9PHAE4.310e-4438.27RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FTW2_ECTSI1.600e-4152.30RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5LEP9_9PHAE1.880e-4060.39RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JE98_9PHAE8.510e-4053.61RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FTV9_ECTSI1.640e-3553.55RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FTW1_ECTSI5.440e-3354.19RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig16187contigH-elongata_contig16187:415..7236 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score70.9
Seed ortholog evalue9.8e-10
Seed eggNOG ortholog2880.D8LLA9
EggNOG free text desc.Regulator of G protein signaling domain
EggNOG OGs2D0MX@1,2SERP@2759
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-12_002920.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Exons8
Model size2175
Cds size747
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig16187.3940.1prot_H-elongata_contig16187.3940.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig16187 1802..6801 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929948.1204627-UTR-H-elongata_contig16187:414..10501622929948.1204627-UTR-H-elongata_contig16187:414..1050Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig16187 415..1050 -
1691679219.4348326-UTR-H-elongata_contig16187:414..10501691679219.4348326-UTR-H-elongata_contig16187:414..1050Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig16187 415..1050 -
1622929948.1370502-UTR-H-elongata_contig16187:1120..18011622929948.1370502-UTR-H-elongata_contig16187:1120..1801Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig16187 1121..1801 -
1691679219.444898-UTR-H-elongata_contig16187:1120..18011691679219.444898-UTR-H-elongata_contig16187:1120..1801Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig16187 1121..1801 -
1622929948.261044-UTR-H-elongata_contig16187:6801..68391622929948.261044-UTR-H-elongata_contig16187:6801..6839Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig16187 6802..6839 -
1691679219.519606-UTR-H-elongata_contig16187:6801..68391691679219.519606-UTR-H-elongata_contig16187:6801..6839Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig16187 6802..6839 -
1622929948.2769022-UTR-H-elongata_contig16187:7163..72361622929948.2769022-UTR-H-elongata_contig16187:7163..7236Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig16187 7164..7236 -
1691679219.5341985-UTR-H-elongata_contig16187:7163..72361691679219.5341985-UTR-H-elongata_contig16187:7163..7236Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig16187 7164..7236 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929948.1539054-CDS-H-elongata_contig16187:1801..19431622929948.1539054-CDS-H-elongata_contig16187:1801..1943Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16187 1802..1943 -
1691679219.4531631-CDS-H-elongata_contig16187:1801..19431691679219.4531631-CDS-H-elongata_contig16187:1801..1943Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16187 1802..1943 -
1622929948.1665814-CDS-H-elongata_contig16187:2306..23871622929948.1665814-CDS-H-elongata_contig16187:2306..2387Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16187 2307..2387 -
1691679219.4610991-CDS-H-elongata_contig16187:2306..23871691679219.4610991-CDS-H-elongata_contig16187:2306..2387Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16187 2307..2387 -
1622929948.1925783-CDS-H-elongata_contig16187:2852..29721622929948.1925783-CDS-H-elongata_contig16187:2852..2972Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16187 2853..2972 -
1691679219.4691787-CDS-H-elongata_contig16187:2852..29721691679219.4691787-CDS-H-elongata_contig16187:2852..2972Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16187 2853..2972 -
1622929948.2122064-CDS-H-elongata_contig16187:3565..38081622929948.2122064-CDS-H-elongata_contig16187:3565..3808Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16187 3566..3808 -
1691679219.4784749-CDS-H-elongata_contig16187:3565..38081691679219.4784749-CDS-H-elongata_contig16187:3565..3808Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16187 3566..3808 -
1622929948.234395-CDS-H-elongata_contig16187:4221..43231622929948.234395-CDS-H-elongata_contig16187:4221..4323Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16187 4222..4323 -
1691679219.4877613-CDS-H-elongata_contig16187:4221..43231691679219.4877613-CDS-H-elongata_contig16187:4221..4323Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16187 4222..4323 -
1622929948.2495494-CDS-H-elongata_contig16187:6742..68011622929948.2495494-CDS-H-elongata_contig16187:6742..6801Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16187 6743..6801 -
1691679219.4998293-CDS-H-elongata_contig16187:6742..68011691679219.4998293-CDS-H-elongata_contig16187:6742..6801Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16187 6743..6801 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig16187.3940.1

>prot_H-elongata_contig16187.3940.1 ID=prot_H-elongata_contig16187.3940.1|Name=mRNA_H-elongata_contig16187.3940.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=249bp
MTWIGDFLPFVISIAVFWASVVDPQIRLAYDDLAAPKRNNANRVLLSVIR
EYRCTAQSASSGFSSGVSGDSEDEGEGERRSNSLQGRRGQETKVTEEVWN
FERLASTPLLAAAFEDYARRALCHESVLFLSEVSRYQGGYYSGSSDTPGT
SQYSTFSRITDTFIRDGSCEEVNISHTDKKILVNVSENGREKFEQMDENE
RRWVFTKAYVEVKNMLEANLLLRFLQSDQFQSVRAQRENVTAMTMSPC*
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mRNA from alignment at H-elongata_contig16187:415..7236-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig16187.3940.1 ID=mRNA_H-elongata_contig16187.3940.1|Name=mRNA_H-elongata_contig16187.3940.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=6822bp|location=Sequence derived from alignment at H-elongata_contig16187:415..7236- (Himanthalia elongata Himel1 dioecious)
AGGAAGGTGGACGACTTATTCAACATCAGCACTGAGCTTACCGTAGTCAC
CGGCCTTTTCGTCATCTATGCAGGTGACAGCCGTGTTTCTCTTGCGCGCG
CTGCTTTAAAAACGCATAATTTATTTGCGCTCCTGTGGCGAACCGATTGA
ATCCCCCCCCCTGACCTCCCAAGGCCAAAAGGGAACCTGTGGAAGCGCGC
AGCGATATTGCAATTTTAGATAGGCAATAGAGAAAAATAAATATGAAATA
AAAGTAATACCTGCTTTCGCTAGGTCCGCGTGCAAATACGGTAATCTCGC
CTCCCTCGCTTCTCTTTCGTCCCCCTCTCGACTATGAAACACACGACAAC
AACTTTGCGTGCCTTCCTTGTCAACTGTTTTTTTGGGGGCTTCCAAGTTG
GCCAGGAATGCTTGTACTACTACAGCAGCTGGGGCATGACCTGGATCGGA
GACTTTCTACCGTTTGTCATCTCGATAGCCGTGTTCTGGGCCAGGCGAGT
ATCACTTCCCCGCTAGCTGTGATACAGCACCCATGCCTTCAAAGTGCGTG
GATCGATTATTTTCATGACGCTCGCCGGGGACCTTGGGTCTCGATCGAGG
GCCCAGCATGGCGATGGTTATTTTCCTTTCTCGAGCAAGTCAGCATAATA
TTAATAGATGATAGATGATATAGTATTGGCCAAAAAGGGGTACTGTATAT
AACCACCTCGGTTTGTTGCCAAAACGTTTTCTCGCAAAAAAACACATATT
ATTCTAGTCCAAGCTCTCTAAACATGCGTACTAATAATATTTCACAGCAC
GTCATTTTTTTGAAAACGAAAAGCAGAGGCTACCTCCACGTGGCCATTCA
TCTCCGCGATTACCCGATTACCCCCGTTTGTCGTGGTAGACCCCGTTTTG
ACTATCTGCCAGCCAATCAGCTTCGCGGAGGGCGCCATCCCTGTTAATCA
TAATTGGCCTCGAAAACGATGCGTCGCGCTTCGGTTCCACTCAAAACATA
AAATCCATTGAGCATTGGGAAGAGCATACCGCAGCGCGACTTCCTACATC
TTTTCGGTTGGCGATCAATTTTACAGCCCCACTTTGGATGTTCAAATGTA
CTAGAAGACATCCTTTACCGGGAGAGTAAGACACAACGTCGGGCAGATGT
AGAACACGCGCTGCAGCCTCGCTTTCGAATTGCTAAAATGCATTGGTCGT
ATGTTGTCAAAAAGTACAAAGTACAAAGGCAAAATTGGCTACCCTTATGA
AGTCCCCGAGAGAAGCGAAGTAAGCCGAACAACCAGCGCAATAAATCACC
GAAAAAAACCGTTGGAATCGTCGCACTGCGCAGTGCTTAAGCACGTGCGG
AAATGGGTATGTCAAATGTGCTCAGGTTCACGTCCAACACGCCTGTTATA
CAATAGCGTCGCATTGAATATTACGTCAACAGACTTCTAGAAACCGCCAC
TACTCAATAGGTAACTTCGCCACTTAACATACATATCGCTACTACTGTAC
CCACAAAATATGCAAAATAAATAAGACATATTATGATATGCAGAATGTCG
CGCAGCGGTATCGGGTTGATCCCTTTTCTCTGCTATATATATATGTGATA
AACAACCACCATATGTTCTTGACAAGGCTTCAAAGCTTTCAAGTTTCAAG
TAGAACAAAAGTGCGATGCAGGTGAGATGTCCGTCATTGGGGCGACTAAT
GATCAGTAGGGGTGACGTCCTCTGCGAAGCTGATTGACTGACATATAACC
AAAAGGGGTCCACCCATGGCAAGTTCATTTTTTTTAAAATAAAAAGGGCT
ACTCGTAGACTAGAGCTGAATAGCATGTATGTATGTATGTATGTATGTAT
TTGAGGTTACCTCCCGTTTTTATTTTTCCAAAAAGGGATGCGATGTGGAA
TATTAGAGGATTAAGAGGGAAGTATAGTGGACGGGAGTGCCTTCTGGGCG
CCCTCAAAGCTTTCGCTATAATTGCCGATCAGCTGGTGATTGCAGCCCAG
GACGAGGGGGGATGGTGCAAAATGACAGTGGAACAAGGGGAGGAACGTTA
CGCTTCATGACCAAACGGATCGCTGTAGAGAAAGTCAGGACTGGACTACT
ACGGCATGCTGCAGTAGTATACCCGAACGTTATGTGAAGGAGCAAGGAGA
GGATATCCCAGAGGAACCATGCTCGTGCTGGTTTGCTCCGTATATATACA
TAGTTGATTAGCTACAGTGGCGTGGACTTGTATCCTTCGGGCGCTTTTTG
GCGTTACATTTTTTTTTTTTTATGTTTCGTTTCGTTTTGTCTTTTTTTTT
ATGGAACCCGCGGCTTTTCGTTCAATCGTTTTCCAACAAGCAGTCTTCTT
TCCGACAGCCACGCGCACAGCTGTGTTTTCTTTTTGGAGATGCCGCTTTT
TCTAAGTATCATGTACATTATTACCGTTTCCTTTTGTATCGAGGGTAGGT
ATTATAGTACATTTTCCTTCAGAATGGTATTTTTCTACCTGGTGACCACG
GGCTGGATTTGAACATCAAATTCAAATCAAAGTGCTTGGCCTGGATGTAT
TTTTGCGAGTACCTTTATTTTCTAACGAAACCGGCGGTATAATAACCCTT
TTTGGTCATTACCTTATATATATATATTATACAGGTAATATATATATATA
TATATATATTAAATGGGCTGGGGTCGGATGTTTGATCGATAGCGCTTGAT
GACGACTCGGTTGCGTGGCGTTCCTCGTGGTATAACATGTACAAGGTTTA
GCCCTCTGAGTCCTTCCTTGTGGTTCTCTTAGCCAATACTCTACTTCGTA
TCAAAGCAGCGTACATGTGCCTCCACTGCGATTTAAAAAGAATTGAAGAC
AAAAACCTGGCTACCGCAAACCAACAAAAAAGAACGTACGAATTTACTCG
CCCAACGACACAGCGTGGTGGACCCGCAAATTCGGCTGGCATATGACGAT
CTAGCGGCTCCCAAAAGAAATAACGCGAACCGGGTCCTTCTCAGCGTCAT
CAGGGAATACCGATGGTGAGCTGCTGCATTCCTCGTGACGAGTTATCAAA
CGTTTTTTTGTCTGTTGCGTCATAAACAAAGTGTTTTTTGTTTGTTTGTT
TTATGTGATTGACATTTCACGCGCCACGCCGAAAGTACCTTCGGAAGTAT
GTATGAGATGCGCCGTTGCGATGTCCGTTTAGAATGGCATACTTACCCAG
ACATTATATTCTGACGAGTGGTCGATTATCCTCATAAACAAAACATGCTA
AGCTTTCTATAATAGTTGGACATTTCTTCCTTTCGCGTCCGTCAGCAGAA
AATAACGGGCATATCCTTAGCCTAAAATATCGTAAGTCACCAACAAAATC
ATATTTCCCTACCACCCGTTATCGCATCCTCGTGCGTATCTGGGGGGGGG
GGTGAACTTGTGACCACGCCTTGACTAGCACGGCGCAGTCGGCATCTTCT
GGGTTTTCTTCGGGCGTCAGCGGTGACAGCGAAGACGAGGGGGAGGGTGA
AAGACGATCCAACAGCCTTCAGGGCCGTAGGGGGCAAGAAACGAAGGTAA
CCGAGGAAGTGTGGAACTTCGAACGGCTGGCAAGCACGCCTTTGCTCGCT
GCTGCGTTCGAGGACTACGCTCGGCGAGCACTATGCCACGAGTCGGTACT
GTTTCTGAGCGAGGTCTCTAGGTGAGATTATACCATGGTCTATGAGCACC
TAACATCCCCGCAAGGAGCGGTTTTCCTGCGCCTTGTGTCAATTCTCTTC
GCTATTTGGTCTTGGTGGTCTCTAGGCGGGTAGCTTCGCAAAAAATGGCA
CAAATTCTCTCTTAGGCGTTCCACACGCCCATTCGGGCCGAACCTTTTAC
CGACGTCGTAGGACAACGTGCGTACCGTGCGGGATGCTTCCTTGAGAACC
GAAGATTATAGTTGAAGATATCGCTTTTTTTGGAGACCGTGTTGCCCATC
TGCTGGCCTCTGCAAGAATTGTGACCAATTAGTCTACGACATGACCTCAC
CCTACCCCCTCGCCCCAATTGTTGTCGGTTTAAGCGTGGTTCACTGTAGT
AGAGCAGCAGGATTCCACTCGCTCAGAATGTAGCGCTGCGAGAAGAGCGC
TGGGGGTTTGAAAGTTTGGCTATAGTTAGGAAGGCGTATATGATGCAGCC
TCGGGTCGTTCGCGAGTCGGGACGGAGGCGCAGAGTGGTTGAATCGGTTC
ATCAGCAACCCACAACGATATCTTCCCTGTATGTCTTGATATGTTTTGTG
CACCATTCACTCAGGTATCAGGGCGGGTATTACTCGGGTTCTTCAGATAC
ACCCGGTACCTCGCAGTACAGCACTTTCTCTCGCATCACAGATACTTTCA
TCAGGGATGGCTCATGCGAGGAGGTAAACATCAGGTACGTTTGTCTTGGA
TCCACTCGAAGGCTATATTTTGCTGAAATGGCGGGGAAAACACCGATCGT
TGTCAACTGCGGGCGACCACATCTGAGTTTTGCCATCCCCAATCTTGCGG
AGCGATTTCTGTTCGGTGGAAAACACTATTAATATTACTAGTCTAGTTAC
GACGTGTAGAGATCGTGCCTGAGATCGAACATGCTAAGGGCGATTATTGC
ATGAGATTTGCCGTGAGATCGTCTGGACCACACGGGCATGTTGCTATTGG
AAACATTAGACGTGCGTGATGCAAGACCCTACGCATACTCCCACCAACCC
CGACTTTCAACACAGATCGGAACGGTAGCTGTTTTCTTAAAAACGAGATG
GTGAATGGTTTGATCGAATTTTTGCTGCCTTCTTCTCCCCACTCTTCCCC
TATATAAAAGTTATGCACTGTTCTGTTTTATATACGCGTGCCACTTCAGT
CACACGGACAAGAAAATACTTGTAAACGTATCCGAAAATGGTCGAGAAAA
GTTCGAGCAAATGGACGAGAATGAACGGAGGTGAACAGGTGGAACTATGT
AGATTCCTCACGTAGGAGACTAGCCCAGGGGACAAATTACGTATCGTTGT
TGTTGCATCTCGGGGGTTGTTGTTACATTTTGTACATAGTCGTCAGTTTT
CGCGGACGCCTGATGTTTTGATCGAGGGTCTCCCCGTAGCACTGCCGTCC
GTGGAGAACACTGAGATGATTGCATCGCATCGCGAGTCTGCCTCGTGTGT
CGCTGGTTACATTTTGAAGAGTGGCAAGTACTGCATGCATTCGGGAGGCC
AGTTTCGAAGAAGCAGGCGTATAGATGTATTGAGGTTCGTAAACCTTTTA
CTTCTAACCCCGTTTTCCCCAACGTCACCGTTTCCTTCCAAAGATGGGTG
TTCACGAAGGCGTACGTCGAGGTGAAAAACATGCTGGAGGCCAACCTCCT
TCTACGTTTCCTGCAGTCCGACCAGTTCCAGAGCGTACGGGCGCAGCGGG
AAAACGTAACGGCTATGACGATGTCCCCGTGTTAAAGGAGAATGCTTATG
AGCGAAGCACGCTGCTTAGCCTTAACACGTTTTGGATACACGGCGGAGCA
ACGAACCCCGATTAGAGTCTGATAGCTTGTAGTTTGTCGAGAAAGTAAAG
TTTTCTCAATCAAGTTGGTGTTTTGAGTGGTGTGCTTAGTGGGGTGTTAT
AAAAAATATATAATGTGTGGGTTTTGAAGGATTTTATCCAAGTTGTGCTT
ATCGATACAAAGGGGCATGCAGAGTGGTGTTAAGCACGGGTGCTTGTTTG
CTTGGGGTACTTCCGTCACAAGCTTGTTTGCTGCATTATGCTAATGAAAA
CATTGATAATGAGCGAGATTTAAGAGATTGAGCGCAGCGCTTGCGCTACT
GACGTTGAGAATGCACGCTTATGCGGCGAACGTCCTAGATACCGTTGGAG
CGAGGAGGGTGTTGGAGGAGGGACGTAAGCCGTCAATCTCTTTTCAACTA
AGTACGCTCCCAGAAAAGGGTGCATCGGTGCGTATTTTGAAGGGTTTAAA
GTTCTTGTTACGGTTTGTGGTTGTTCCTCAATTGTCTTCTAATGCCTCGA
GAGCAAAAAATGTGCATCGTCCTTCTAAGTTATAACTCCGGCCTAGTACA
GTTAACGCAAGCTTAGCCCGCTGGTTTAGAAGGAGGTATCACGCGTTCCC
ATGAAAGAATGCTAGAGTATTATGCTTTACTCATTCTTATAAAAGTACAG
GAATGTTGTCTCGAAAATGATTTGTACCCATTGTAGTTGTTAATTCCGCG
TAGTAACCGTTCATTTGCGGGAAAATATCCCCAGCGAAATGAACTTGATG
TTGGGACGAGCGTGATATCCAAGCTGTTCGCCAAAATTAGACACAGCCCC
CCGTTTTATACATTTGACGTAAGCTCTCCGGATTCCCGATTGCTGTATTG
GACGTTTAGCGTATCTGCCCGTCACCGAGTGTCGCCATATACATGCGCAA
CGTCGACATGTCGAAATTTGGCATTCCCCGATGGTGATACTATGTGTCGA
AGTGTTTCCATGCTATAGGTAATGGTGTGATGCGCCAATACGGTCGTTAT
TCCTCTATATTGCCAACGACCGCAAGTTTCCGCCGTAGCGTTTACCACTT
TTGGTCGTCTCTACGTGGTATTTGATAGAGGGCTCCGCGTATTTCACGTG
TAGAATCGAAAACTCTAGTTATTCTGTACAGAGCTATGCGTGCTACTCTC
GGTACATTACGATGCCTTTTGGTGGCAAAAACTTCGAAGTAATATAGAGC
GGCTTGTAAAACTTACTTCGATTTATACCTTTGAAGAATGTATATAAAGT
ACTGTATCTAGTATGTGCTCTTGACAATTTCATTTTGTTCGAGGCTTTTG
GTCGGCTTTGCCCGTTATAGGC
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Coding sequence (CDS) from alignment at H-elongata_contig16187:415..7236-

>mRNA_H-elongata_contig16187.3940.1 ID=mRNA_H-elongata_contig16187.3940.1|Name=mRNA_H-elongata_contig16187.3940.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1494bp|location=Sequence derived from alignment at H-elongata_contig16187:415..7236- (Himanthalia elongata Himel1 dioecious)
ATGACCTGGATCGGAGACTTTCTACCGTTTGTCATCTCGATAGCCGTGTT
CTGGGCCAGATGACCTGGATCGGAGACTTTCTACCGTTTGTCATCTCGAT
AGCCGTGTTCTGGGCCAGCGTGGTGGACCCGCAAATTCGGCTGGCATATG
ACGATCTAGCGGCTCCCAAAAGAAATAACGCGAACCGGGTCCTTCTCAGC
GTCATCAGGGAATACCGATGCGTGGTGGACCCGCAAATTCGGCTGGCATA
TGACGATCTAGCGGCTCCCAAAAGAAATAACGCGAACCGGGTCCTTCTCA
GCGTCATCAGGGAATACCGATGCACGGCGCAGTCGGCATCTTCTGGGTTT
TCTTCGGGCGTCAGCGGTGACAGCGAAGACGAGGGGGAGGGTGAAAGACG
ATCCAACAGCCTTCAGGGCCGTAGGGGGCAAGAAACGAAGGTAACCGAGG
AAGTGTGGAACTTCGAACGGCTGGCAAGCACGCCTTTGCTCGCTGCTGCG
TTCGAGGACTACGCTCGGCGAGCACTATGCCACGAGTCGGTACTGTTTCT
GAGCGAGGTCTCTAGCACGGCGCAGTCGGCATCTTCTGGGTTTTCTTCGG
GCGTCAGCGGTGACAGCGAAGACGAGGGGGAGGGTGAAAGACGATCCAAC
AGCCTTCAGGGCCGTAGGGGGCAAGAAACGAAGGTAACCGAGGAAGTGTG
GAACTTCGAACGGCTGGCAAGCACGCCTTTGCTCGCTGCTGCGTTCGAGG
ACTACGCTCGGCGAGCACTATGCCACGAGTCGGTACTGTTTCTGAGCGAG
GTCTCTAGGTATCAGGGCGGGTATTACTCGGGTTCTTCAGATACACCCGG
TACCTCGCAGTACAGCACTTTCTCTCGCATCACAGATACTTTCATCAGGG
ATGGCTCATGCGAGGAGGTAAACATCAGGTATCAGGGCGGGTATTACTCG
GGTTCTTCAGATACACCCGGTACCTCGCAGTACAGCACTTTCTCTCGCAT
CACAGATACTTTCATCAGGGATGGCTCATGCGAGGAGGTAAACATCAGTC
ACACGGACAAGAAAATACTTGTAAACGTATCCGAAAATGGTCGAGAAAAG
TTCGAGCAAATGGACGAGAATGAACGGAGTCACACGGACAAGAAAATACT
TGTAAACGTATCCGAAAATGGTCGAGAAAAGTTCGAGCAAATGGACGAGA
ATGAACGGAGATGGGTGTTCACGAAGGCGTACGTCGAGGTGAAAAACATG
CTGGAGGCCAACCTCCTTCTACGTTTCCTGCAGTCCGACCAGTTCCAGAG
CGTACGGGCGCAGCGGGAAAACGTAACGGCTATGACGATGTCCCCGTGTT
AAATGGGTGTTCACGAAGGCGTACGTCGAGGTGAAAAACATGCTGGAGGC
CAACCTCCTTCTACGTTTCCTGCAGTCCGACCAGTTCCAGAGCGTACGGG
CGCAGCGGGAAAACGTAACGGCTATGACGATGTCCCCGTGTTAA
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