mRNA_H-elongata_contig161714.3937.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig161714.3937.1
Unique NamemRNA_H-elongata_contig161714.3937.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig161714.3937.1 vs. uniprot
Match: D7FX13_ECTSI (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FX13_ECTSI)

HSP 1 Score: 159 bits (403), Expect = 5.410e-47
Identity = 73/95 (76.84%), Postives = 86/95 (90.53%), Query Frame = 1 
Query:    1 RYPFYALSIARMCPPALKWMRYTAFIVLYPLGFASELGTWIVGLPHMKALGLPALLPGLPGGSVVYLLYAYILFAFATAAPKLYLHMLRQRKKQL 285
            RYPFYAL+IA MCPP L+W+RY+AF++LYPLGFA ELGTWIVGLPH+KA+GLP + PGLP GS +Y+LYAYI+FAFA  APKLY+HMLRQRKKQL
Sbjct:  135 RYPFYALNIAGMCPPVLQWLRYSAFVLLYPLGFAGELGTWIVGLPHIKAVGLPGV-PGLPEGSSIYVLYAYIVFAFAIGAPKLYMHMLRQRKKQL 228
[Close]
BLAST of mRNA_H-elongata_contig161714.3937.1 vs. uniprot
Match: A0A835Z8Y0_9STRA (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8Y0_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 1.700e-23
Identity = 49/98 (50.00%), Postives = 68/98 (69.39%), Query Frame = 1 
Query:    1 RYPFYALSIARMCPPALKWMRYTAFIVLYPLGFASELGTWIVGLPHMKALGLPALLPGLPGGSVVYLLYAYILFAFATAAPKLYLHMLRQRKKQLAPP 294
            RYP+YA ++  +CP  L W+RY+AF++LYPLGFA+E+G ++V  PHMKA G    + GLP G    +L AY+LFA A  A  L+ +ML+ RK+QL  P
Sbjct:   89 RYPYYATNLLEICPDFLHWLRYSAFMLLYPLGFAAEVGCFVVAYPHMKA-GDKYRIEGLPEGGQFAVLGAYMLFAHAIGALTLFKYMLKARKRQLRQP 185
[Close]
BLAST of mRNA_H-elongata_contig161714.3937.1 vs. uniprot
Match: A0A6I8PHZ0_ORNAN (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase n=3 Tax=Monotremata TaxID=9255 RepID=A0A6I8PHZ0_ORNAN)

HSP 1 Score: 77.8 bits (190), Expect = 5.260e-15
Identity = 44/107 (41.12%), Postives = 60/107 (56.07%), Query Frame = 1 
Query:    1 RYPFYALSIARMCPPALKWMRYTAFIVLYPLGFASELGTWIVGLPHMKALGLPAL-LPGLPGGSVVYLLYAY-ILFAFATAAPKLYLHMLRQRKKQLAPPREADKAK 315
            RY FY  S+    P  +KW RYT FI LYP+G   EL T    LP ++  GL ++ LP     S  Y  +   ++F++    P+LY HMLRQR+K LAPP    K++
Sbjct:  150 RYSFYTFSLLDHLPYLIKWTRYTLFIALYPMGVTGELLTIYAALPFVRRAGLYSVSLPNKYNFSFDYHAFLILVMFSYIPLFPQLYFHMLRQRRKLLAPPEGPKKSE 256
[Close]
BLAST of mRNA_H-elongata_contig161714.3937.1 vs. uniprot
Match: W5M3L3_LEPOC (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase n=2 Tax=Lepisosteus oculatus TaxID=7918 RepID=W5M3L3_LEPOC)

HSP 1 Score: 77.4 bits (189), Expect = 6.840e-15
Identity = 44/107 (41.12%), Postives = 60/107 (56.07%), Query Frame = 1 
Query:    1 RYPFYALSIARMCPPALKWMRYTAFIVLYPLGFASELGTWIVGLPHMKALGLPAL-LPGLPGGSVVYLLYAYI-LFAFATAAPKLYLHMLRQRKKQLAPPREADKAK 315
            RY FY  S+    P  +KW RYT FIVLYP+G   EL T    LP+++  G+ ++ LP     S  Y  +  + + ++    P+LY HMLRQRKK LAP     KA+
Sbjct:  145 RYSFYTFSLLNHLPYLIKWARYTLFIVLYPMGVTGELLTIYAALPYVRETGMYSIRLPNKFNFSFDYYTFLILTMVSYIPLFPQLYFHMLRQRKKVLAPAEGYSKAE 251
[Close]
BLAST of mRNA_H-elongata_contig161714.3937.1 vs. uniprot
Match: A0A7S1B590_9STRA (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1B590_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 1.030e-14
Identity = 38/95 (40.00%), Postives = 53/95 (55.79%), Query Frame = 1 
Query:    1 RYPFYALSIARMCPPALKWMRYTAFIVLYPLGFASELGTWIVGLPHMKALGLPALLPGLPGGSVVYLLYAYILFAFATAAPKLYLHMLRQRKKQL 285
            RYPFYA S+   CP  L+W+RY+ FIV YPLGF SE+G  I      K          + G  + +L+ +Y+   +    P+LY +M RQR+K L
Sbjct:  119 RYPFYATSVGGFCPKFLQWLRYSQFIVFYPLGFVSEIGVIIAATIKKKQ--------NMFGIDIRWLIASYLFIIYGYYGPQLYWYMFRQRRKSL 205
[Close]
BLAST of mRNA_H-elongata_contig161714.3937.1 vs. uniprot
Match: A0A8J7TJ93_ATRSP (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase (Fragment) n=1 Tax=Atractosteus spatula TaxID=7917 RepID=A0A8J7TJ93_ATRSP)

HSP 1 Score: 77.4 bits (189), Expect = 1.630e-14
Identity = 44/107 (41.12%), Postives = 60/107 (56.07%), Query Frame = 1 
Query:    1 RYPFYALSIARMCPPALKWMRYTAFIVLYPLGFASELGTWIVGLPHMKALGLPAL-LPGLPGGSVVYLLYAYI-LFAFATAAPKLYLHMLRQRKKQLAPPREADKAK 315
            RY FY  S+    P  +KW RYT FIVLYP+G   EL T    LP+++  G+ ++ LP     S  Y  +  + + ++    P+LY HMLRQRKK LAP     KA+
Sbjct:  225 RYSFYTFSLLNHLPYLIKWARYTLFIVLYPMGVTGELLTIYAALPYVRETGMYSIRLPNKFNFSFDYYTFLILTMVSYIPLFPQLYFHMLRQRKKVLAPAEGYSKAE 331
[Close]
BLAST of mRNA_H-elongata_contig161714.3937.1 vs. uniprot
Match: D9IVF2_STRIE (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase n=5 Tax=Echinacea TaxID=7674 RepID=D9IVF2_STRIE)

HSP 1 Score: 74.7 bits (182), Expect = 4.330e-14
Identity = 40/97 (41.24%), Postives = 56/97 (57.73%), Query Frame = 1 
Query:    1 RYPFYALSIARMCPPALKWMRYTAFIVLYPLGFASELGTWIVGLPHMKALGLPALLPGLPGGSVV----YLLYAYILFAFATAAPKLYLHMLRQRKK 279
            RY FY  ++    P  L W+RYT FIVLYP+G   EL T  + LP++K+ GL +L   LP    +    Y +  +++  +    P+LY HMLRQRKK
Sbjct:  112 RYAFYVFALLNRLPYVLMWLRYTLFIVLYPIGVTGELWTIYLALPYVKSTGLYSL--ELPNDYNISFDYYSVLIFLMILYIPIFPRLYSHMLRQRKK 206
[Close]
BLAST of mRNA_H-elongata_contig161714.3937.1 vs. uniprot
Match: A0A5J4Z155_PORPP (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z155_PORPP)

HSP 1 Score: 75.1 bits (183), Expect = 4.950e-14
Identity = 42/114 (36.84%), Postives = 71/114 (62.28%), Query Frame = 1 
Query:    1 RYPFYALSIARM-CPPALKWMRYTAFIVLYPLGFASELGTWIVGLPHMKA--LGLPALLPGLPGGSVVYLLYAYILFAFATAA---PKLYLHMLRQRKKQLA-PPREADKAKTP 321
            R+P Y L + ++ CP  L W+RY+AF++LYP G ++E+G  +V LP++K   +   +L     GG++++  Y + L   A+ A   P +Y++ML+QRK+ L+   R+A K K P
Sbjct:  136 RFPVYVLKLLQVECPSWLNWLRYSAFLLLYPSGISAEIGVVVVSLPYIKQSRVNFVSL-----GGTLIFNFYIFCLCGLASYAYFGPTMYMYMLKQRKRNLSLSGRDATKNKEP 244
[Close]
BLAST of mRNA_H-elongata_contig161714.3937.1 vs. uniprot
Match: A0A7M7N2M7_STRPU (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase n=1 Tax=Strongylocentrotus purpuratus TaxID=7668 RepID=A0A7M7N2M7_STRPU)

HSP 1 Score: 74.7 bits (182), Expect = 5.080e-14
Identity = 40/97 (41.24%), Postives = 56/97 (57.73%), Query Frame = 1 
Query:    1 RYPFYALSIARMCPPALKWMRYTAFIVLYPLGFASELGTWIVGLPHMKALGLPALLPGLPGGSVV----YLLYAYILFAFATAAPKLYLHMLRQRKK 279
            RY FY  ++    P  L W+RYT FIVLYP+G   EL T  + LP++K+ GL +L   LP    +    Y +  +++  +    P+LY HMLRQRKK
Sbjct:  122 RYAFYVFALLNRLPYVLMWLRYTLFIVLYPIGVTGELWTIYLALPYVKSTGLYSL--ELPNDYNISFDYYSVLIFLMILYIPIFPRLYSHMLRQRKK 216
[Close]
BLAST of mRNA_H-elongata_contig161714.3937.1 vs. uniprot
Match: A0A061S8X2_9CHLO (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase (Fragment) n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061S8X2_9CHLO)

HSP 1 Score: 74.3 bits (181), Expect = 5.580e-14
Identity = 42/104 (40.38%), Postives = 62/104 (59.62%), Query Frame = 1 
Query:    1 RYPFYALSIARMCPPALKWMRYTAFIVLYPLGFASELGTWIVGLPHMKALGLPAL-LPGLPGGSVVYLLYAYILFA-FATAAPKLYLHMLRQRKKQLAPPREAD 306
            RYP+YA ++   CP AL W+RYTAFI LYP+G  +E+   +  LP  K  G+ +L +P     +  Y ++ + L A +  A  +LY  +LR R K+LAPPR  +
Sbjct:  109 RYPWYAATLLGRCPHALTWLRYTAFIPLYPVGVLAEVWIILEALPIAKESGMYSLRMPNWANFAFDYPMFLWALLAVYPFAWLQLYAQLLRSRSKKLAPPRPKE 212
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig161714.3937.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FX13_ECTSI5.410e-4776.84Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase... [more]
A0A835Z8Y0_9STRA1.700e-2350.00Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase... [more]
A0A6I8PHZ0_ORNAN5.260e-1541.12Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase... [more]
W5M3L3_LEPOC6.840e-1541.12Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase... [more]
A0A7S1B590_9STRA1.030e-1440.00Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase... [more]
A0A8J7TJ93_ATRSP1.630e-1441.12Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase... [more]
D9IVF2_STRIE4.330e-1441.24Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase... [more]
A0A5J4Z155_PORPP4.950e-1436.84Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase... [more]
A0A7M7N2M7_STRPU5.080e-1441.24Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase... [more]
A0A061S8X2_9CHLO5.580e-1440.38Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig161714contigH-elongata_contig161714:128..1086 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score157.9
Seed ortholog evalue2.6e-36
Seed eggNOG ortholog2880.D7FX13
KEGG rclassRC00770,RC01095
KEGG koko:K10703
KEGG ReactionR07760,R10827
KEGG Pathwayko00062,ko01040,ko01110,ko01212,map00062,map01040,map01110,map01212
KEGG ModuleM00415
EggNOG free text desc.3-hydroxy-lignoceroyl-CoA dehydratase activity
EggNOG OGsCOG5198@1,KOG3187@2759
EC4.2.1.134
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01004
Hectar predicted targeting categorysignal anchor
Exons2
Model size340
Cds size324
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig161714.3937.1prot_H-elongata_contig161714.3937.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig161714 128..1071 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929947.7444866-CDS-H-elongata_contig161714:127..2711622929947.7444866-CDS-H-elongata_contig161714:127..271Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig161714 128..271 +
1691679219.2850046-CDS-H-elongata_contig161714:127..2711691679219.2850046-CDS-H-elongata_contig161714:127..271Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig161714 128..271 +
1622929947.763581-CDS-H-elongata_contig161714:891..10711622929947.763581-CDS-H-elongata_contig161714:891..1071Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig161714 892..1071 +
1691679219.298652-CDS-H-elongata_contig161714:891..10711691679219.298652-CDS-H-elongata_contig161714:891..1071Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig161714 892..1071 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929947.7777078-UTR-H-elongata_contig161714:1071..10861622929947.7777078-UTR-H-elongata_contig161714:1071..1086Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig161714 1072..1086 +
1691679219.3068225-UTR-H-elongata_contig161714:1071..10861691679219.3068225-UTR-H-elongata_contig161714:1071..1086Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig161714 1072..1086 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig161714.3937.1

>prot_H-elongata_contig161714.3937.1 ID=prot_H-elongata_contig161714.3937.1|Name=mRNA_H-elongata_contig161714.3937.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=108bp
RYPFYALSIARMCPPALKWMRYTAFIVLYPLGFASELGTWIVGLPHMKAL
GLPALLPGLPGGSVVYLLYAYILFAFATAAPKLYLHMLRQRKKQLAPPRE
ADKAKTP*
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mRNA from alignment at H-elongata_contig161714:128..1086+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig161714.3937.1 ID=mRNA_H-elongata_contig161714.3937.1|Name=mRNA_H-elongata_contig161714.3937.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=959bp|location=Sequence derived from alignment at H-elongata_contig161714:128..1086+ (Himanthalia elongata Himel1 dioecious)
AGATATCCTTTCTATGCCTTGAGCATCGCGCGCATGTGCCCCCCGGCCCT
TAAATGGATGAGGTACACGGCGTTCATCGTCCTCTACCCCTTGGGTTTCG
CGAGCGAGTTAGGAACGTGGATCGTCGGACTGCCGCACATGAAGGTGAGG
GGGCTGTTTTTCTTCTTCTTTTTATATCTTCTCTTGAAGCCCTGGTCCTG
TTTCGATGTATGTACGTTGATCGAGTTTCGGGTCGGCGGCTAGACTAAAA
AAGGAGTTTTGTAGAGAATGGGGGAGGAGCTGTGGATGATAGATGCTTAA
GCGCGCGCCAACACGCTTGCGGGGCAAAGAGCGGCGCTCGAACGCGACTT
CTACATCGTTGTTCCAGAAGAAGCATAAAGATTGAACGCATCTATATTTC
GTCATTTTTCTTCGTCGGCGAGCGGCGGCGGTTTAATACCCTTCAACGAG
GTAATGATGAACGGCCTGTTGCCAAATTCCCTGTGGAAGAGCCTATACAC
ATTTGGGTTTGAACATTATCTGTGCCGTGTTAGAGTGAGAGATAAAAAGA
CTTACGAGAAATAATTATTCCTCAATCCCGGGAAATTCGAGCATAGGCGT
TCTCACGCATTCCTTTGTCGATCAACGCTGGAGTAGTCGTCGCTTGACAC
GTTTTCGAATGAAGAAACACCTCCACACCCATATACAACGGACGGCGCTG
CTGCCGATTATCATGATTTTGCATTTCTCCCCCTCCCCCATTCTTCACTT
ACCTCCGGGGATAGGCGTTAGGGTTGCCGGCGCTGCTACCAGGCCTGCCG
GGGGGGTCCGTGGTATACCTACTTTACGCCTACATTCTCTTCGCCTTCGC
CACGGCTGCGCCCAAGCTCTACCTGCACATGCTCCGCCAGCGGAAGAAGC
AGTTGGCACCGCCTAGGGAGGCCGACAAGGCCAAAACGCCTTGAGTGTGT
GTCTTTTTT
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Coding sequence (CDS) from alignment at H-elongata_contig161714:128..1086+

>mRNA_H-elongata_contig161714.3937.1 ID=mRNA_H-elongata_contig161714.3937.1|Name=mRNA_H-elongata_contig161714.3937.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=648bp|location=Sequence derived from alignment at H-elongata_contig161714:128..1086+ (Himanthalia elongata Himel1 dioecious)
AGATATCCTTTCTATGCCTTGAGCATCGCGCGCATGTGCCCCCCGGCCCT
TAAATGGATGAGGTACACGGCGTTCATCGTCCTCTACCCCTTGGGTTTCG
CGAGCGAGTTAGGAACGTGGATCGTCGGACTGCCGCACATGAAGAGATAT
CCTTTCTATGCCTTGAGCATCGCGCGCATGTGCCCCCCGGCCCTTAAATG
GATGAGGTACACGGCGTTCATCGTCCTCTACCCCTTGGGTTTCGCGAGCG
AGTTAGGAACGTGGATCGTCGGACTGCCGCACATGAAGGCGTTAGGGTTG
CCGGCGCTGCTACCAGGCCTGCCGGGGGGGTCCGTGGTATACCTACTTTA
CGCCTACATTCTCTTCGCCTTCGCCACGGCTGCGCCCAAGCTCTACCTGC
ACATGCTCCGCCAGCGGAAGAAGCAGTTGGCACCGCCTAGGGAGGCCGAC
AAGGCCAAAACGCCTTGAGCGTTAGGGTTGCCGGCGCTGCTACCAGGCCT
GCCGGGGGGGTCCGTGGTATACCTACTTTACGCCTACATTCTCTTCGCCT
TCGCCACGGCTGCGCCCAAGCTCTACCTGCACATGCTCCGCCAGCGGAAG
AAGCAGTTGGCACCGCCTAGGGAGGCCGACAAGGCCAAAACGCCTTGA
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