mRNA_H-elongata_contig16150.3927.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig16150.3927.1 vs. uniprot
Match: A0A2N9IFW4_FAGSY (CCHC-type domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9IFW4_FAGSY) HSP 1 Score: 189 bits (481), Expect = 1.770e-49 Identity = 142/430 (33.02%), Postives = 212/430 (49.30%), Query Frame = 1
Query: 16 QAMESLEWDKWRKAEETYMCGMVENCVCKRTTRPKDKLVAGKTLLYKRKVEQDGKIEKYKCRLVTQGFWQVEGVHYTKKYLPTPATASIRMFLATAAAKDGELRHFDAKQAFLKVDIDEELYIEIPEEYQDFPGAANPRSLGSLTARRRWWKISTSRK---EARY---------------------WLRRGLPTFSKADE------------------PRNPEEKEEIRNFPYREAVGVLMWTATMTWMDIASATRAVTRFYENPGPAHKKAVMKIMQYLLHTKDWGITYGRQGCGLRMEAYTDSDFRACLDTRRSMSGAVLMLAKGAIGWYSRMQEVTPSGTSEAENVALSEA------VQKFME-----PSMMAGAVNVFEDNEGSIKLATNKHASRRTKHIDVKHHMVRDASDVQTVRVVLLITHLA 1146
+AM + + W+KA E+ M M N V +P+ G +YKRK+ GK+E YK RLV +G+ Q G+ Y + + P SIR+ L+ AA D E+ D K AFL +I EE+Y++ P + A R++ S+ + W + K EA Y ++ + L FS D P+ EE+E++RN PY AVG LM+ T DI A V+R+ NPGP H AV I++YL TK + + +G + L ++ YTDS+F++ +D R+S+SG V L KGAI W S Q+ T T+EAE +A SEA ++KF++ PS+ + + + DN G+I A A +RTKHI+ + H++ D V ITH+A
Sbjct: 553 EAMNDKDVEHWKKAMESEMDSMYTNQVWTLVDKPEGIKPIGCKWIYKRKLGPTGKVETYKARLVAKGYTQKVGIDYEETFSPVAMLKSIRILLSIAAHYDYEIWQMDVKTAFLNGNIREEIYMDQPVGFH-ISWARIKRAMSSI---KMWLSSHFAMKDLGEASYILGIKLFRDRKKRLLGLSQVNYIDKILARFSMQDSKKGFSPFRHGVHLSKNMCPKTQEEREKMRNCPYASAVGSLMYAMLCTRPDICYAVSIVSRYQSNPGPEHWTAVKHILKYLNRTKHYFLVFGSKD--LNIQGYTDSNFQSDIDDRKSISGFVFTLGKGAISWRSCKQDTTADSTTEAEYIAASEAAKEAVWIRKFIQELGVVPSIES-PIKIHCDNNGAIANAVEPRAHKRTKHIERRFHLIHDIIHRGDVE----ITHIA 971
BLAST of mRNA_H-elongata_contig16150.3927.1 vs. uniprot
Match: A5AHF5_VITVI (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Vitis vinifera TaxID=29760 RepID=A5AHF5_VITVI) HSP 1 Score: 177 bits (449), Expect = 3.810e-47 Identity = 139/425 (32.71%), Postives = 204/425 (48.00%), Query Frame = 1
Query: 16 QAMESLEWDKWRKAEETYMCGMVENCVCKRTTRPKDKLVAGKTLLYKRKVEQDGKIEKYKCRLVTQGFWQVEGVHYTKKYLPTPATASIRMFLATAAAKDGELRHFDAKQAFLKVDIDEELYIEIPE----------EY--QDFP----GAAN---------PRSLGSLTARRRW---WKISTSRKEARYWLRRGLPTFSKADE------PRNPEEKEEIRNFPYREAVGVLMWTATMTWMDIASATRAVTRFYENPGPAHKKAVMKIMQYLLHTKDWGITYGRQGCGLRMEAYTDSDFRACLDTRRSMSGAVLMLAKGAIGWYSRMQEVTPSGTSEAENVALSEA------VQKFMEP----SMMAGAVNVFEDNEGSIKLATNKHASRRTKHIDVKHHMVRDASDVQTVRVVLLITHLADDQP 1158
QAMES + KW +A + + N V P G ++K K + G IE+YK RLV +GF Q EG+ Y + P S+R+ + A D EL D K AFL ++DE++Y+E PE EY ++F G AN RS G L ++ W + ++ G+ K D+ PRN E+E+++ PY AVG LM+ T T DI+ R+ +PG H KA K+M+YL TKD+ +TY R L + Y+DSD+ CLD+ +S SG V MLA GAI W S Q +T S T EAE VA EA ++ F+ +A + ++ DN ++ + N S +KH+D+K+ +V++ Q V + + T L P
Sbjct: 49 QAMESDDSSKWMEAMNEELKSIAHNDVWDLIELPNSCKPVGCKWIFKTKRDAKGNIERYKARLVAKGFTQKEGIDYKDTFSPVSKKDSLRIIMTLVAHFDLELHQMDVKTAFLNGNLDEDIYMEQPEGDLGLLHETKEYLSKNFHMVDMGEANYVIGIEIFRDRSRGVLGLSQKGYIDWVLERFNMQS---CSSGIAPILKGDKLSKMQCPRNNMEREQMKKIPYASAVGSLMYAQTCTRPDISFVVGMFGRYQSDPGFEHWKAAKKVMRYLQGTKDYMLTYKRSE-QLEVVGYSDSDYGGCLDSLKSTSGFVFMLANGAISWKSEKQSITASSTMEAEFVACFEASSHALWLRNFISGLGVVDSIAKPLRIYCDNTAAVFFSKNGKFSSGSKHMDLKYLVVKERVQKQQVSIENIRTTLMVGDP 469
BLAST of mRNA_H-elongata_contig16150.3927.1 vs. uniprot
Match: A0A0J7K690_LASNI (Retrovirus-related pol polyprotein from transposon tnt 1-94 (Fragment) n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7K690_LASNI) HSP 1 Score: 177 bits (450), Expect = 2.410e-45 Identity = 137/432 (31.71%), Postives = 198/432 (45.83%), Query Frame = 1
Query: 1 PRNRRQAMESLEWDKWRKAEETYMCGMVENCVCKRTTRPKDKLVAGKTLLYKRKVEQDGKIEKYKCRLVTQGFWQVEGVHYTKKYLPTPATASIRMFLATAAAKDGELRHFDAKQAFLKVDIDEELYIEIPEEYQDFPGAAN-PRSLGSLTARRRWW---------KISTSRKEA------------------------------------RYWLR----------RGLPTFSKADEPR--NPEEKEEIRNFPYREAVGVLMWTATMTWMDIASATRAVTRFYENPGPAHKKAVMKIMQYLLHTKDWGITYGRQGCGLRMEAYTDSDFRACLDTRRSMSGAVLMLAKGAIGWYSRMQEVTPSGTSEAENVALSEAVQ---------KFMEPSMMAGAVNVFEDNEGSIKLATNKHASRRTKHIDVKHHMVRD 1095
P+ +AM S E ++WR+A E +++N +T P + +++K+K + DGK+ +YK RLV +GF Q G+ Y + Y P SIR + AA +D E+ FD K AFL ++DEE+++++P D +SL L R W K + EA Y LR +G+ T +A + N + N PYREAVG LM+ A +T DI A V+R+ E H AV +I++Y T D+GI Y + Y+DSDF A DTRRS SG V + G I W S Q++ T+EAE VA S+A + K + + + A + DN+GSIKL N +RTKHIDV+ H +RD
Sbjct: 565 PQTYEEAMASNEVEQWRRAIEEEESALIKNNTWTKTKLPTGRKAITAKIIFKKKRDADGKVHRYKARLVVRGFSQRPGIDYNETYAPVIRYESIRFLFSLAAKEDFEIAQFDIKTAFLNGELDEEIFMQLPTRVTDAGNVVKLQKSLYGLKQSPRQWNKRFHQFLCKFNFISSEADRCVYKGNIEGERVLLALYVDDGLVMAKTQQAVEMKNYLLRVAKRFNMEDAKGISTPMEAGKYLVINNNDTSAGMNVPYREAVGSLMFAACVTRPDIMFAVAVVSRYLEQSATEHWTAVKRIIRYAKETADYGIVYDG-ATAEPLVIYSDSDFAADPDTRRSTSGYVTVHCGGPISWQSIRQKIVALSTTEAEYVAASDATKEAIWIRRLMKSVGAAAVGHATELRLDNQGSIKLIKNPEFHKRTKHIDVRFHFIRD 995
BLAST of mRNA_H-elongata_contig16150.3927.1 vs. uniprot
Match: A0A438CBX1_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438CBX1_VITVI) HSP 1 Score: 171 bits (434), Expect = 4.750e-45 Identity = 125/388 (32.22%), Postives = 187/388 (48.20%), Query Frame = 1
Query: 16 QAMESLEWDKWRKAEETYMCGMVENCVCKRTTRPKDKLVAGKTLLYKRKVEQDGKIEKYKCRLVTQGFWQVEGVHYTKKYLPTPATASIRMFLATAAAKDGELRHFDAKQAFLKVDIDEELYIEIPEEYQDFPGAANPRSLGSLTARRRWWKISTSRKEARYWLRRGLP---------TFSKADEPRNPEEKEEIRNFPYREAVGVLMWTATMTWMDIASATRAVTRFYENPGPAHKKAVMKIMQYLLHTKDWGITYGRQGCGLRMEAYTDSDFRACLDTRRSMSGAVLMLAKGAIGWYSRMQEVTPSGTSEAENVALSEA------VQKFMEPSMMAGAVN----VFEDNEGSIKLATNKHASRRTKHIDVKHHMVRDASDVQTVRV 1122
Q +S +KW +A + M M +N V PK G ++K K + G I +YK RLV +GF Q E + Y + + P + S R+ + A D EL D K FL +IDE +Y+ PE ++ GS K + +R+ + P FS P+N EK+++ FPY VG LM+ T DIA + R+ N G H K V ++MQYL TKD+ +TY R L + Y+DSDF CLD+RRS SG + MLA GA+ W S Q + S T EAE +A EA ++ F+ + + + DN+ + + N +S ++KHID+K +V++ VQ+++V
Sbjct: 60 QVKQSSNSEKWIEAMKDEMKSMKDNGVWDLVELPKGVKPIGCKWIFKTKRDSKGNIVRYKARLVAKGFTQKEAIDYKETFSPVSSKDSFRIIMTLVAHYDLELHQMDVKTTFLNSNIDETIYMVQPENFESNDSKQLINRNGSRGILGLSQKAYIDKVLSRFGMSNCAPGDTPVAKGDKFSLHQCPKNELEKKDMERFPYASVVGSLMYAQVCTCPDIAYIVGMLGRYLSNLGMDHWKKVKQVMQYLQRTKDYMLTYHRSS-HLEIVGYSDSDFAGCLDSRRSTSGYIFMLAGGAVSWKSVKQTLIASSTMEAEFIACYEASNHGIWLRNFVTQLRIVDGIEKPLRINCDNKAAELYSKNNRSSSKSKHIDIKFLIVKER--VQSLQV 444
BLAST of mRNA_H-elongata_contig16150.3927.1 vs. uniprot
Match: A0A438D4E2_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438D4E2_VITVI) HSP 1 Score: 172 bits (437), Expect = 6.910e-44 Identity = 122/382 (31.94%), Postives = 194/382 (50.79%), Query Frame = 1
Query: 148 LYKRKVEQDGKIEKYKCRLVTQGFWQVEGVHYTKKYLPTPATASIRMFLATAAAKDGELRHFDAKQAFLKVDIDEELYIEIPEEYQDFPG---------------------AANPRSL-----GSLTARRRWWKISTSRKEARYWLRRGLPTFS---KADE------PRNPEEKEEIRNFPYREAVGVLMWTATMTWMDIASATRAVTRFYENPGPAHKKAVMKIMQYLLHTKDWGITYGRQGCGLRMEAYTDSDFRACLDTRRSMSGAVLMLAKGAIGWYSRMQEVTPSGTSEAENVALSEA------VQKFMEPSMMAGAVN----VFEDNEGSIKLATNKHASRRTKHIDVKHHMVRDASDVQTVRVVLLITHLADDQP 1158
++K K + G IE+YK RLV +GF Q EG+ YT+ + P S+R+ LA A D EL+ D K AFL +++EE+Y++ PE + G A N + L G L + + ++ R+ ++ P+ S K D P+N E+E+++N PY AVG LM+ T DIA A + R+ N G H KA K+M+YL TKD+ + Y R+ L + Y+DSDF C+D+R+S SG + +LA GAI W S Q +T + T EAE ++ EA ++ F+ + +++ ++ DN ++ +A N + R+KHID+K+ +R+ + V + + T L P
Sbjct: 395 VFKTKKDSLGNIERYKARLVAKGFTQKEGIDYTETFSPVSKKDSLRIILALVAHFDLELQQMDVKTAFLNGELEEEVYMKQPEGFPSSDGEQLVSGSKVCFLVLYVDDILLATNDKGLLHEIKGILGLSQETY---INKVLERFRMKNCSPSVSPIVKGDRFNLDQCPKNDLEREQMKNIPYASAVGSLMYAQVCTRPDIAFAVGMLGRYQSNLGIDHWKAAKKVMRYLQGTKDYKLMY-RRTSNLEVVGYSDSDFAGCVDSRKSTSGYIFILASGAISWRSVKQTMTATSTMEAEFISCFEATSHGVWLKSFISGLRVMDSISRPLSIYCDNSAAVFMAKNNKSGSRSKHIDIKYLAIRERVKEKKVVIEHISTELMIADP 772
BLAST of mRNA_H-elongata_contig16150.3927.1 vs. uniprot
Match: A0A4Z0A825_9AGAM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Hericium alpestre TaxID=135208 RepID=A0A4Z0A825_9AGAM) HSP 1 Score: 168 bits (426), Expect = 7.730e-44 Identity = 123/387 (31.78%), Postives = 201/387 (51.94%), Query Frame = 1
Query: 1 PRNRRQAMESLEWDKWRKAEETYMCGMVENCVCKRTTRPKDKLVAGKTLLYKRKVEQDGKIEKYKCRLVTQGFWQVEGVHYTKKYLPTPATASIRMFLATAAAKDGELRHFDAKQAFLKVDIDEELYIEIPEEYQDFPGAANPRS-LGSLTARRRWWKISTSRKEARYWLRRGL-PTF--SKADEPRNPEEKEEIRNFPYREAVGVLMWTATMTWMDIASATRAVTRFYENPGPAHKKAVMKIMQYLLHTKDWGITYGRQGCGLRMEAYTDSDFRACLDTRRSMSGAVLMLAKGAIGWYSRMQEVTPSGTSEAENVALSEAVQKFMEPSMMAGAV-NVFE-------DNEGSIKLATNKHASRRTKHIDVKHHMVRDASDVQTVRVV 1125
PR +A EW KW +A E + M + K +P + G ++K K + G I KYK RLV QGF Q+ GV +T + P +SIR+ AA + EL D K A+L D+DEE+Y++ P + PG + R+ + ++ AR + + S+ L L P+F + A P ++ EE+RN PYREA+G LM+ A T DIA A +++F +NPG H + +++YL TK+ +TY R + Y+D+D+ + D R +SG V ++ GA+ W S+ Q + ++EAE VA++ A ++ + G + F+ DN+ ++ LA + RTKHI +++H +R+ + + +V
Sbjct: 82 PRTVNEARAGAEWPKWEEAIEDELVRMEKMGTWKLVEKPDRVNIVGSKWVFKIKRDAAGTIIKYKARLVAQGFSQIPGVDFTDTFAPVAKLSSIRILAVLAAHFNWELHQMDVKNAYLNGDLDEEIYMKQPPGFPA-PGQEHKRAYIDTILAR---FNLEDSKP-----LDTALDPSFQLTTAQSPSTLQQYEEMRNVPYREAIGSLMYAALGTRPDIAYAVTTLSQFMQNPGRMHWEGAKCVLRYLKATKEEWLTY-RGDAKTGIMGYSDADWGSS-DHRHFISGYVFLVDSGAVSWSSKKQPIVALLSTEAEYVAMTHAAKEAVWMRAFLGEMLTPFDMPTLLHCDNQSAMTLAKDNIFHSRTKHIAIRYHFIRNIIEHDEIDLV 457
BLAST of mRNA_H-elongata_contig16150.3927.1 vs. uniprot
Match: A5ASB2_VITVI (Uncharacterized protein n=1 Tax=Vitis vinifera TaxID=29760 RepID=A5ASB2_VITVI) HSP 1 Score: 167 bits (422), Expect = 1.440e-43 Identity = 122/377 (32.36%), Postives = 183/377 (48.54%), Query Frame = 1
Query: 16 QAMESLEWDKWRKAEETYMCGMVENCVCKRTTRPKDKLVAGKTLLYKRKVEQDGKIEKYKCRLVTQGFWQVEGVHYTKKYLPTPATASIRMFLATAAAKDGELRHFDAKQAFLKVDIDEELYIEIPEEYQDFPGAANPRSLGSLTARRRWWK--ISTSRKE------ARYWLRRGLP---TFSKADE------PRNPEEKEEIRNFPYREAVGVLMWTATMTWMDIASATRAVTRFYENPGPAHKKAVMKIMQYLLHTKDWGITYGRQGCGLRMEAYTDSDFRACLDTRRSMSGAVLMLAKGAIGWYSRMQEVTPSGTSEAENVALSEAVQKFMEPSMMAGAVNVFEDNEGSIKLATNKHASRRTKHIDVKHHMVRD 1095
Q +S + +KW +A + M M +N V PK G ++K K + I +YK RLV +GF Q E + Y + + P + S R+ +A A D EL D K FL +IDE +Y+ D N + + R + + S+K +R+ + P +K D+ P+N EK+++ FPY AVG L++ T DIA + R+ NPG H K ++M+YL TKD+ +TY R L + Y+DSDF CLD+RRS SG + MLA GA+ W S Q + S T EAE +A EA G + DN+G+ + N +S ++KHID+K +V++
Sbjct: 39 QIKQSSDSEKWIEAMKDEMKSMKDNGVWDLVKLPKGVKPIGCKWIFKTKRDSKDNIVRYKARLVAKGFTQKEDIDYKETFSPVSSKDSFRIIMALVAHYDLELHQMDVKTTFLNGNIDETIYMRFLSSKFDMKDLGNASFMLGIQIHRDSSRGILGLSQKAYIDKVLSRFGMSNCAPGDMPLAKGDKFSLHQCPKNELEKKDMERFPYASAVGSLIYAQVCTRPDIAYIVGMLGRYLSNPGMDHWKKAKRVMRYLQRTKDYMLTYHRSS-HLEIVGYSDSDFIGCLDSRRSTSGYIFMLAGGAVSWKSVKQTLIASSTMEAEFIACYEASNH--------GIWLINCDNKGAELYSKNNRSSSKSKHIDIKFLVVKE 406
BLAST of mRNA_H-elongata_contig16150.3927.1 vs. uniprot
Match: A0A6H5L0Z9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0Z9_9PHAE) HSP 1 Score: 165 bits (418), Expect = 3.810e-43 Identity = 110/332 (33.13%), Postives = 170/332 (51.20%), Query Frame = 1
Query: 253 YLPTPATASIRMFLATAAAKDGELRHFDAKQAFLKVDIDEELYIEIPEEY--------------------QDFPGAANPRSLGSLTARRRWW--------------KISTSRKEARYWLRRG--------LPTFSKADEPRNPEEKEEIRNFPYREAVGVLMWTATMTWMDIASATRAVTRFYENPGPAHKKAVMKIMQYLLHTKDWGITYGRQG-CGLRMEAYTDSDFRACLDTRRSMSGAVLMLAKGAIGWYSRMQEVTPSGTSEAENVALSEAVQ---------KFMEPSMMAGAVNVFEDNEGSIKLATNKHASRRTKHIDVKHHMVR 1092
Y PT A +S+R+ A A ++ LRHFD KQAF++ D+DE++++ +PE +D ++LG L RW+ KIS + G LP K E ++ EE+ ++P+RE +G LMW AT T DIA+A RAV R+ +P H +A + I+ Y++ T + GIT+ R GL ME + D+D+ + RRS+SG ++M G I W+SR Q+ T+EAE V+L++ ++ +FM P + VFEDN+G+I+LA N ++ +KHI V+HH +R
Sbjct: 12 YAPTVAVSSVRLLAAMACEQNLSLRHFDIKQAFVQSDLDEDVFMRLPEGCGRLSDDIFSIGEEERCDQFGRDLNTMVPVKNLGDL----RWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGLKLSEF---DQDEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHCRAGLGILGYVVRTSELGITFRRGSVAGLSMEVFADADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHIHVRHHFIR 336
BLAST of mRNA_H-elongata_contig16150.3927.1 vs. uniprot
Match: A0A0J7KHD5_LASNI (Retrotransposon ty1-copia subclass n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7KHD5_LASNI) HSP 1 Score: 170 bits (431), Expect = 7.980e-43 Identity = 133/398 (33.42%), Postives = 197/398 (49.50%), Query Frame = 1
Query: 46 WRKAEETYMCGMVENCVCKRTTRPKDKLVAGKTLLYKRKVEQDGKIEKYKCRLVTQGFWQVEGVHYTKKYLPTPATASIRMFLATAAAKDGELRHFDAKQAFLKVDIDEELYIEIPE------------EYQDFPGAANPRSLGS------LTARR----RWWKISTSRKEARYWLR----------RGLPT-------FSKADEPRNPEEKEEIRNFPYREAVGVLMWTATMTWMDIASATRAVTRFYENPGPAHKKAVMKIMQYLLHTKDWGITY-GRQGCGLRMEAYTDSDFRACLDTRRSMSGAVLMLAKGAIGWYSRMQEVTPSGTSEAENVALSEAVQKFMEPSMMAGAVNVFE--------DNEGSIKLATNKHASRRTKHIDVKHHMVRD 1095
W+KA + + +++N P + ++K K G+I +YK RLV +G+ Q V YT+ Y P S+R LA AA +D E+ D K AFL +DEE+Y+ +P+ + D+ ++GS L +R R KIS + Y LR +G+ T S E N +K ++ P+REAVG LM+ A ++ DI A V+R+ ENPG H +AV +I++Y T +GI Y G GL + Y+DSD+ DTRRS SG V +LA GA+ W S+ Q + T+EAE VA S+A ++ + + +V V + DN+GSIKL N +RTKHIDV+ H +R+
Sbjct: 503 WQKAVDEELASLMKNGTWCEADLPPGRQAISAKWVFKLKRGPSGEIVRYKARLVARGYAQRPNVDYTETYSPVVRYESVRALLAIAAQQDMEIAQGDVKTAFLYGTLDEEIYMTVPDGAPNAGQVTAVDKVMDYLMTEFEVTIGSTEYFIGLEIKRDCIVRTIKIS----QRNYLLRVAEKIGLADAKGISTPAESRVYLSTTSEDNN--DKRDMEKVPFREAVGSLMFAACVSRPDIMFAVSVVSRYLENPGLEHWQAVKRIIRYAKETAAYGIVYDGHNTDGLII--YSDSDYATDPDTRRSTSGYVTVLAGGAVSWMSQRQRIVALSTTEAEYVAASDATKEAIWIRRLLESVGVNKKGPIEMRLDNQGSIKLIKNPEFHKRTKHIDVRFHYIRE 892
BLAST of mRNA_H-elongata_contig16150.3927.1 vs. uniprot
Match: A0A438GKY6_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Vitis vinifera TaxID=29760 RepID=A0A438GKY6_VITVI) HSP 1 Score: 170 bits (431), Expect = 9.290e-43 Identity = 135/440 (30.68%), Postives = 211/440 (47.95%), Query Frame = 1
Query: 1 PRNRRQAMESLEWDKWRKAEETYMCGMVENCVCKRTTRPKDKLVAGKTLLYKRKVEQDGKIEKYKCRLVTQGFWQVEGVHYTKKYLPTPATASIRMFLATAAAKDGELRHFDAKQAFLKVDIDEE----------LYIE-----------IPEEYQDFPGAANPRSLGSLTA-------RRRWWKISTSRKEA-------RYWLRRGLPTFS---KADE------PRNPEEKEEIRNFPYREAVGVLMWTATMTWMDIASATRAVTRFYENPGPAHKKAVMKIMQYLLHTKDWGITYGRQGCGLRMEAYTDSDFRACLDTRRSMSGAVLMLAKGAIGWYSRMQEVTPSGTSEAENVALSEA------VQKFMEPSMMAGAVN----VFEDNEGSIKLATNKHASRRTKHIDVKHHMVRDASDVQTVRVVLLITHLADDQP 1158
P + QAM E + W A + M M N V P G ++K K + G IE+YK +LV +GF Q EG+ YT+ + P S+R+ LA A D EL+ D K AFL +++EE LY++ + E Q + + +G + R R+ I +E R+ ++ P+ S K D P+N E+E+++N PY AVG LM+ T DIA A + R+ NPG H KA K+M+YL TKD+ + Y R+ L + Y+DSDF C+D+R+S SG + +LA GAI W S Q +T + T EAE ++ EA ++ F+ + +++ ++ DN ++ +A N + R+KHID+K+ +R+ + V + + T L P
Sbjct: 885 PESFSQAMNCKESELWYNAMKDEMSSMKCNDVWDLVELPNGAKTIGCKWVFKTKKDSLGNIERYKAKLVAKGFTQKEGIDYTETFSPVSKKDSLRIILALVAHFDLELQQMDVKTAFLNGELEEEVSGSKVCFFVLYVDDILLATNDKGLLHEVKQFLSKNFDMKDMGEASYVIGIKIHRDRFKGILGLSQETHINKVLERFRMKNCSPSVSPIVKGDSFNLNQCPKNDLEREQMKNIPYASAVGSLMYAQVCTRPDIAFAVGMLGRYQSNPGIDHWKAAKKVMRYLQGTKDYKLMY-RRTSNLEVVGYSDSDFAGCVDSRKSTSGYIFILAGGAISWRSVKQTMTATSTMEAEFISCFEATSHGVWLKSFISGLRVMDSISRPLSIYCDNSAAVFMAKNNKSGSRSKHIDIKYLAIRERVKEKKVVIEHISTELMIADP 1323 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig16150.3927.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig16150.3927.1 >prot_H-elongata_contig16150.3927.1 ID=prot_H-elongata_contig16150.3927.1|Name=mRNA_H-elongata_contig16150.3927.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=392bp MESLEWDKWRKAEETYMCGMVENCVCKRTTRPKDKLVAGKTLLYKRKVEQback to top mRNA from alignment at H-elongata_contig16150:6355..7596+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig16150.3927.1 ID=mRNA_H-elongata_contig16150.3927.1|Name=mRNA_H-elongata_contig16150.3927.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1242bp|location=Sequence derived from alignment at H-elongata_contig16150:6355..7596+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig16150:6355..7596+ >mRNA_H-elongata_contig16150.3927.1 ID=mRNA_H-elongata_contig16150.3927.1|Name=mRNA_H-elongata_contig16150.3927.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2352bp|location=Sequence derived from alignment at H-elongata_contig16150:6355..7596+ (Himanthalia elongata Himel1 dioecious)back to top |