mRNA_H-elongata_contig161449.3925.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig161449.3925.1
Unique NamemRNA_H-elongata_contig161449.3925.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig161449.3925.1 vs. uniprot
Match: D7FS47_ECTSI (Major facilitator superfamily sugar transporter n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS47_ECTSI)

HSP 1 Score: 74.3 bits (181), Expect = 7.460e-14
Identity = 38/71 (53.52%), Postives = 49/71 (69.01%), Query Frame = 1 
Query:   13 TPSECKTA---RLYPSLAMFSSFLLLGVFMSALGPSVPSLSRDVSVRTELFGAVFSLRGMGYLLGSWSTSL 216
            T ++C T    RL PSLA+F SF LLGVF+S LGP++  LS D+ V     GA  +LRG+GYLLGSW +S+
Sbjct:    3 TSAKCATTNGTRLLPSLALFGSFFLLGVFISCLGPAIAPLSHDLGVADVSLGAGVALRGLGYLLGSWLSSV 73
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig161449.3925.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FS47_ECTSI7.460e-1453.52Major facilitator superfamily sugar transporter n=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig161449contigH-elongata_contig161449:651..872 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionMajor facilitator superfamily
Ec32 orthologEc-16_004380.1
Exons1
Model size222
Cds size222
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929946.624029-CDS-H-elongata_contig161449:650..8721622929946.624029-CDS-H-elongata_contig161449:650..872Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig161449 651..872 -
1691679218.8615882-CDS-H-elongata_contig161449:650..8721691679218.8615882-CDS-H-elongata_contig161449:650..872Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig161449 651..872 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig161449.3925.1prot_H-elongata_contig161449.3925.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig161449 651..872 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig161449.3925.1

>prot_H-elongata_contig161449.3925.1 ID=prot_H-elongata_contig161449.3925.1|Name=mRNA_H-elongata_contig161449.3925.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=74bp
MLRPTPSECKTARLYPSLAMFSSFLLLGVFMSALGPSVPSLSRDVSVRTE
LFGAVFSLRGMGYLLGSWSTSLT*
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mRNA from alignment at H-elongata_contig161449:651..872-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig161449.3925.1 ID=mRNA_H-elongata_contig161449.3925.1|Name=mRNA_H-elongata_contig161449.3925.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=222bp|location=Sequence derived from alignment at H-elongata_contig161449:651..872- (Himanthalia elongata Himel1 dioecious)
ATGCTAAGACCAACTCCGTCAGAATGCAAAACAGCGAGACTGTACCCGTC
ACTTGCCATGTTCTCATCCTTCTTGTTACTGGGAGTGTTCATGAGCGCTC
TGGGACCGTCAGTTCCGTCGCTATCTCGGGATGTTAGCGTTCGGACGGAG
TTATTCGGCGCCGTCTTTTCTTTGCGAGGAATGGGCTATCTCCTAGGATC
TTGGTCGACGTCGCTTACGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig161449:651..872-

>mRNA_H-elongata_contig161449.3925.1 ID=mRNA_H-elongata_contig161449.3925.1|Name=mRNA_H-elongata_contig161449.3925.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=444bp|location=Sequence derived from alignment at H-elongata_contig161449:651..872- (Himanthalia elongata Himel1 dioecious)
ATGCTAAGACCAACTCCGTCAGAATGCAAAACAGCGAGACTGTACCCGTC
ACTTGCCATGTTCTCATCCTTCTTGTTACTGGGAGTGTTCATGAGCGCTC
TGGGACCGTCAGTTCCGTCGCTATCTCGGGATGTTAGCGTTCGGACGGAG
TTATTCGGCGCCGTCTTTTCTTTGCGAGGAATGGGCTATCTCCTAGGATC
TTGGTCGACGTCGCTTACGTGAATGCTAAGACCAACTCCGTCAGAATGCA
AAACAGCGAGACTGTACCCGTCACTTGCCATGTTCTCATCCTTCTTGTTA
CTGGGAGTGTTCATGAGCGCTCTGGGACCGTCAGTTCCGTCGCTATCTCG
GGATGTTAGCGTTCGGACGGAGTTATTCGGCGCCGTCTTTTCTTTGCGAG
GAATGGGCTATCTCCTAGGATCTTGGTCGACGTCGCTTACGTGA
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