mRNA_H-elongata_contig16137.3922.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig16137.3922.1
Unique NamemRNA_H-elongata_contig16137.3922.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig16137.3922.1 vs. uniprot
Match: A0A5A7UPS0_CUCME (Cysteine-rich RLK (RECEPTOR-like protein kinase) 8 n=1 Tax=Cucumis melo var. makuwa TaxID=1194695 RepID=A0A5A7UPS0_CUCME)

HSP 1 Score: 54.3 bits (129), Expect = 1.190e-6
Identity = 32/79 (40.51%), Postives = 46/79 (58.23%), Query Frame = 1 
Query:   10 WIFDSGSSGHVTPNANQLRNFHPC--NRFLRVANGTQLPIEGYGDLTV-DSLSGQGVVCVELLNVSYVPRLSYHLLSLS 237
            WI D G++ H+T  +    ++ PC  N  +R+ANG+  PI G G + + D  S        L NV +VP+LSYHLLS+S
Sbjct:  227 WILDLGATDHLTGFSEYFVSYTPCAGNEKIRIANGSLAPIAGKGQIVLFDGFS--------LQNVLHVPKLSYHLLSIS 297
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BLAST of mRNA_H-elongata_contig16137.3922.1 vs. uniprot
Match: A0A6A4ZTN2_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4ZTN2_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 2.180e-6
Identity = 24/48 (50.00%), Postives = 30/48 (62.50%), Query Frame = 1 
Query:    4 ESWIFDSGSSGHVTPNANQLRNFHPCNRFLRVANGTQLPIEGYGDLTV 147
            E WI DSG+S   TPN +   N+ PC   L V NG QLP+ GYG L++
Sbjct:  427 EHWIVDSGASASCTPNRDYFSNYVPCALSLTVGNGAQLPVLGYGPLSL 474
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BLAST of mRNA_H-elongata_contig16137.3922.1 vs. uniprot
Match: A0A6A4ZGC5_9STRA (DDE-1 domain-containing protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4ZGC5_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 2.190e-6
Identity = 24/48 (50.00%), Postives = 30/48 (62.50%), Query Frame = 1 
Query:    4 ESWIFDSGSSGHVTPNANQLRNFHPCNRFLRVANGTQLPIEGYGDLTV 147
            E WI DSG+S   TPN +   N+ PC   L V NG QLP+ GYG L++
Sbjct:  565 EHWIVDSGASASCTPNRDYFSNYVPCALSLTVGNGAQLPVLGYGPLSL 612
[Close]
BLAST of mRNA_H-elongata_contig16137.3922.1 vs. uniprot
Match: A0A5D3BQE1_CUCME (Cysteine-rich RLK (RECEPTOR-like protein kinase) 8 n=1 Tax=Cucumis melo var. makuwa TaxID=1194695 RepID=A0A5D3BQE1_CUCME)

HSP 1 Score: 50.4 bits (119), Expect = 2.720e-5
Identity = 31/79 (39.24%), Postives = 45/79 (56.96%), Query Frame = 1 
Query:   10 WIFDSGSSGHVTPNANQLRNFHPC--NRFLRVANGTQLPIEGYGDLTV-DSLSGQGVVCVELLNVSYVPRLSYHLLSLS 237
            WI D G++ H+T  +    ++  C  N  +R+ANG+  PI G G + + D  S        L NV +VP+LSYHLLS+S
Sbjct:   94 WILDLGATDHLTGFSEYFVSYTLCASNEKIRIANGSLAPIAGKGQIVLFDGFS--------LQNVLHVPKLSYHLLSIS 164
[Close]
BLAST of mRNA_H-elongata_contig16137.3922.1 vs. uniprot
Match: A0A3L6VUU4_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3L6VUU4_9STRA)

HSP 1 Score: 48.9 bits (115), Expect = 9.460e-5
Identity = 23/48 (47.92%), Postives = 28/48 (58.33%), Query Frame = 1 
Query:    4 ESWIFDSGSSGHVTPNANQLRNFHPCNRFLRVANGTQLPIEGYGDLTV 147
            E WI DSG+S   TPN +      PC   L V NG QLP+ GYG L++
Sbjct:  703 EHWIVDSGASASCTPNRDYFSKNVPCALSLTVGNGAQLPVLGYGPLSL 750
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig16137.3922.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A5A7UPS0_CUCME1.190e-640.51Cysteine-rich RLK (RECEPTOR-like protein kinase) 8... [more]
A0A6A4ZTN2_9STRA2.180e-650.00Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]
A0A6A4ZGC5_9STRA2.190e-650.00DDE-1 domain-containing protein (Fragment) n=1 Tax... [more]
A0A5D3BQE1_CUCME2.720e-539.24Cysteine-rich RLK (RECEPTOR-like protein kinase) 8... [more]
A0A3L6VUU4_9STRA9.460e-547.92Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig16137contigH-elongata_contig16137:4297..4539 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size243
Cds size243
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929946.2535212-CDS-H-elongata_contig16137:4296..45391622929946.2535212-CDS-H-elongata_contig16137:4296..4539Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16137 4297..4539 -
1691679218.7412531-CDS-H-elongata_contig16137:4296..45391691679218.7412531-CDS-H-elongata_contig16137:4296..4539Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16137 4297..4539 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig16137.3922.1prot_H-elongata_contig16137.3922.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig16137 4297..4539 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig16137.3922.1

>prot_H-elongata_contig16137.3922.1 ID=prot_H-elongata_contig16137.3922.1|Name=mRNA_H-elongata_contig16137.3922.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=81bp
NESWIFDSGSSGHVTPNANQLRNFHPCNRFLRVANGTQLPIEGYGDLTVD
SLSGQGVVCVELLNVSYVPRLSYHLLSLSTL
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mRNA from alignment at H-elongata_contig16137:4297..4539-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig16137.3922.1 ID=mRNA_H-elongata_contig16137.3922.1|Name=mRNA_H-elongata_contig16137.3922.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=243bp|location=Sequence derived from alignment at H-elongata_contig16137:4297..4539- (Himanthalia elongata Himel1 dioecious)
AACGAGAGTTGGATCTTCGACAGCGGGTCGTCTGGTCATGTGACACCCAA
CGCTAATCAATTGAGGAATTTCCACCCTTGCAACAGATTTCTGCGTGTAG
CTAATGGCACGCAACTCCCGATTGAAGGCTACGGTGATCTCACCGTTGAC
TCTCTATCTGGCCAGGGCGTTGTGTGTGTAGAGCTGTTAAACGTATCCTA
TGTACCTCGCCTTAGCTACCACCTTCTCTCGCTCTCTACTTTG
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Coding sequence (CDS) from alignment at H-elongata_contig16137:4297..4539-

>mRNA_H-elongata_contig16137.3922.1 ID=mRNA_H-elongata_contig16137.3922.1|Name=mRNA_H-elongata_contig16137.3922.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=486bp|location=Sequence derived from alignment at H-elongata_contig16137:4297..4539- (Himanthalia elongata Himel1 dioecious)
AACGAGAGTTGGATCTTCGACAGCGGGTCGTCTGGTCATGTGACACCCAA
CGCTAATCAATTGAGGAATTTCCACCCTTGCAACAGATTTCTGCGTGTAG
CTAATGGCACGCAACTCCCGATTGAAGGCTACGGTGATCTCACCGTTGAC
TCTCTATCTGGCCAGGGCGTTGTGTGTGTAGAGCTGTTAAACGTATCCTA
TGTACCTCGCCTTAGCTACCACCTTCTCTCGCTCTCTACTTTGAACGAGA
GTTGGATCTTCGACAGCGGGTCGTCTGGTCATGTGACACCCAACGCTAAT
CAATTGAGGAATTTCCACCCTTGCAACAGATTTCTGCGTGTAGCTAATGG
CACGCAACTCCCGATTGAAGGCTACGGTGATCTCACCGTTGACTCTCTAT
CTGGCCAGGGCGTTGTGTGTGTAGAGCTGTTAAACGTATCCTATGTACCT
CGCCTTAGCTACCACCTTCTCTCGCTCTCTACTTTG
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