mRNA_H-elongata_contig161357.3920.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig161357.3920.1
Unique NamemRNA_H-elongata_contig161357.3920.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig161357.3920.1 vs. uniprot
Match: A0A6H5JIZ1_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JIZ1_9PHAE)

HSP 1 Score: 283 bits (724), Expect = 1.880e-91
Identity = 129/148 (87.16%), Postives = 140/148 (94.59%), Query Frame = 1
Query:   10 KVCTLSTQFETGHKLRAQLLRWSRNSWRSDIKMLFLERSVWRKYPWLAITSLDKMISPFTMVYGPVAVLFISFWEQNMFILIAFMCYIVFTRIIKTIMYFTWSRPRPPVKWLWYIGPFIIVQYWGAVIKLFALCTLKDRRWGNREVKV 453
            +VCTLSTQFE G KLRAQLLRWSRNSWRSDIKMLFLERSVWRKYPWLA+TSLDKMISPFTMVYGP+AVLF +FWEQNMFIL+AF CYI+ TR++KT+MYFTWSRPRPP +W WYIGPFI VQYWGAVIKL+ALCTLKDRRWGNREVKV
Sbjct:  272 EVCTLSTQFEAGAKLRAQLLRWSRNSWRSDIKMLFLERSVWRKYPWLAVTSLDKMISPFTMVYGPMAVLFYAFWEQNMFILVAFACYILVTRVMKTVMYFTWSRPRPPCRWFWYIGPFIFVQYWGAVIKLYALCTLKDRRWGNREVKV 419          
BLAST of mRNA_H-elongata_contig161357.3920.1 vs. uniprot
Match: A0A3G4ZUE2_9VIRU (Glycosyltransferase family 2 protein n=1 Tax=Edafosvirus sp. TaxID=2487765 RepID=A0A3G4ZUE2_9VIRU)

HSP 1 Score: 122 bits (305), Expect = 1.710e-29
Identity = 65/155 (41.94%), Postives = 96/155 (61.94%), Query Frame = 1
Query:    7 RKVCTLSTQFETGHKLRAQLLRWSRNSWRSDIKMLFLERSVWRKYPWLAITSLDKMISPFTMVYGPVAVLFISFWEQNMF------ILIAFMCYIVFTRIIKTIMYFTWSRPRPPVKWLWYIGPFIIVQYWGAVIKLFALCTLKDRRWGNREVKV 453
            R  C L+T FETG    +QL RWSRNSWRSDI  LF+ER +W   P+ A    DKM+SPF M+YG      I+++   ++      ++I + C+++F+R +K I YFT    R   K++ Y+ PF+I QY+ A+I+++ L T+ DR WG + V V
Sbjct:  331 RDNCELATTFETGWAFLSQLKRWSRNSWRSDITSLFVERKIWCITPFTAFILFDKMLSPFFMLYG------ITYFPYKLYSMGHYELVIGWFCWLLFSRFLKLIYYFT---NRQKWKYVIYLTPFVIFQYFQALIRIWTLITIMDRGWGTKNVTV 476          
BLAST of mRNA_H-elongata_contig161357.3920.1 vs. uniprot
Match: A0A381ZXH2_9ZZZZ (Uncharacterized protein n=1 Tax=marine metagenome TaxID=408172 RepID=A0A381ZXH2_9ZZZZ)

HSP 1 Score: 120 bits (301), Expect = 3.520e-29
Identity = 68/150 (45.33%), Postives = 97/150 (64.67%), Query Frame = 1
Query:   10 KVCTLSTQFETGHKLRAQLLRWSRNSWRSDIKMLFLERSVWRKYPWLAITSLDKMISPFTMVYGPVAVLFISFWEQNMFILIAFMCYIVFTRIIKTIMYFTWSRPRPPVKWLW--YIGPFIIVQYWGAVIKLFALCTLKDRRWGNREVKV 453
            K C +ST+FE    L  QLLRW RN+ RSDIK++ LER VW KYP+LA+  +D+ ++PFTM  G   +L + +    +F LI  + YI   R  K I YFT+ +P+    + +  Y+  FI+  Y GA++KL+AL +L +R+WGNREVKV
Sbjct:  277 KDCYVSTRFEDPPVLFYQLLRWGRNTIRSDIKLICLERKVWCKYPFLAVVMVDRFLTPFTMFIG--LILALVYGNIELFYLI--LLYIFVIRTFKLIPYFTYFKPKLKYNYRFIPYVPIFILATYAGALLKLWALFSLNNRKWGNREVKV 422          
BLAST of mRNA_H-elongata_contig161357.3920.1 vs. uniprot
Match: A0A1Y1Y7Z3_9FUNG (Polysaccharide synthase n=2 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1Y7Z3_9FUNG)

HSP 1 Score: 108 bits (271), Expect = 4.910e-25
Identity = 58/154 (37.66%), Postives = 95/154 (61.69%), Query Frame = 1
Query:    4 CRKVCTLSTQFETGHKLRAQLLRWSRNSWRSDIKMLFLERSVWRKYPWLAITSLDKMISPFTMVYGPVAVLFI-------SFWEQNMFILIAFMCYIVFTRIIKTIMYFTWSRPRPPVKWLWYIGPFIIVQYWGAVIKLFALCTLKDRRWGNRE 444
            C +   LST F+   +   Q+LRW+RN+WRSDI+ L  ER +WR+YP++A T LDK  +PFT++ GP+ VL +        +      ++++++ +++ TR IK + +F W RP+  V    Y+  F++  Y+ A++KL+ALCTL    WG R+
Sbjct:  260 CPEAELLST-FKNNWRFLKQVLRWTRNTWRSDIRSLCTERVIWRRYPFVAFTMLDKFFNPFTLLAGPLLVLSLCVKAYKGQYHLPLWVVILSYIFWLLITRCIKLLPHF-WRRPQDIV----YVPAFLLFNYYFAIMKLYALCTLHVTAWGTRQ 407          
BLAST of mRNA_H-elongata_contig161357.3920.1 vs. uniprot
Match: A0A507DMU1_9FUNG (Uncharacterized protein n=2 Tax=Synchytrium endobioticum TaxID=286115 RepID=A0A507DMU1_9FUNG)

HSP 1 Score: 107 bits (267), Expect = 3.580e-24
Identity = 53/148 (35.81%), Postives = 92/148 (62.16%), Query Frame = 1
Query:   10 KVCTLSTQFETGHKLRAQLLRWSRNSWRSDIKMLFLERSVWRKYPWLAITSLDKMISPFTMVYGPVAVLFISFWEQNM---FILIAFMCYIVFTRIIKTIMYFTWSRPRPPVKWLWYIGPFIIVQYWGAVIKLFALCTLKDRRWGNRE 444
            K   L++ F+   +   Q+ RW+RN+WRSDIK LFLER +WR+YP++A    DK  +P T++YGP+++L +      +    IL+++  +++ TR++K I +F  SRP+     + Y+  ++I  Y+ A+ K++ L TL +  WG R+
Sbjct:  414 KQAELASTFKNNWRFLKQITRWTRNTWRSDIKSLFLERKIWRRYPFVAYQMFDKFFNPLTLLYGPISILTMCINHPRLPVWVILVSYTVWLLLTRLLKYIPHFV-SRPQD----ILYLPAWLIFNYYFAISKIYCLFTLHNTDWGTRQ 556          
BLAST of mRNA_H-elongata_contig161357.3920.1 vs. uniprot
Match: A0A8H7UDH0_9FUNG (Uncharacterized protein n=1 Tax=Umbelopsis vinacea TaxID=44442 RepID=A0A8H7UDH0_9FUNG)

HSP 1 Score: 105 bits (263), Expect = 8.580e-24
Identity = 53/151 (35.10%), Postives = 93/151 (61.59%), Query Frame = 1
Query:   22 LSTQFETGHKLRAQLLRWSRNSWRSDIKMLFLERSVWRKYPWLAITSLDKMISPFTMVYGPVAVLFISFWEQNMF-----------ILIAFMCYIVFTRIIKTIMYFTWSRPRPPVKWLWYIGPFIIVQYWGAVIKLFALCTLKDRRWGNR 441
            LS+ F+   +   Q+LRW+RN+WRSD + LF+ER +WR+YP++A T +DK+ +PFT++ GP+ V+  S  +               I I+++ +++ TR  K I +F + RP+  +    ++  +++  Y+ AV+K++ALCTL +  WG R
Sbjct:  269 LSSTFKDNWRFLKQVLRWTRNTWRSDFRSLFIERHIWRRYPYVAFTMVDKLFNPFTLLVGPILVIIFSTQQARNAGDTNPPLPAWNIAISYIVWLLLTRAFKLIPHF-FKRPQDII----WVPAWLVFNYYFAVMKIYALCTLHEVGWGTR 414          
BLAST of mRNA_H-elongata_contig161357.3920.1 vs. uniprot
Match: B0D1T0_LACBS (Glycosyltransferase family 2 protein n=2 Tax=Laccaria TaxID=29882 RepID=B0D1T0_LACBS)

HSP 1 Score: 105 bits (262), Expect = 1.110e-23
Identity = 54/156 (34.62%), Postives = 91/156 (58.33%), Query Frame = 1
Query:    4 CRKVCTLSTQFETGHKLRAQLLRWSRNSWRSDIKMLFLERSVWRKYPWLAITSLDKMISPFTMVYGPVAVLFISF----------WEQNMFILIAFMCYIVFTRIIKTIMYFTWSRPRPPVKWLWYIGPFIIVQYWGAVIKLFALCTLKDRRWGNR 441
            C K   L +  +   +   Q+LRW+RN+WRSD++ LF+ER VW  +P++A T +DK+ +PFT++ GP  V ++ +          +     IL ++  ++V TR  K + +  W+RP+  +    Y+  FI+  Y+ A++KL+ALCTL +  WG R
Sbjct:  259 CCKEAELLSTMKPNWRFLKQVLRWTRNTWRSDLRSLFMERHVWTSHPYVAFTMVDKLFNPFTLLVGPCLVSYLMYKSTIPVAQGGYHLPWNILCSYFVWLVATRTFKLLPHL-WTRPQDVI----YVPAFILFGYYFAIMKLYALCTLHETGWGTR 409          
BLAST of mRNA_H-elongata_contig161357.3920.1 vs. uniprot
Match: A0A067NUR4_PLEOS (Glycosyltransferase family 2 protein n=2 Tax=Pleurotus ostreatus TaxID=5322 RepID=A0A067NUR4_PLEOS)

HSP 1 Score: 104 bits (259), Expect = 2.730e-23
Identity = 56/160 (35.00%), Postives = 93/160 (58.13%), Query Frame = 1
Query:    4 CRKVCTLSTQFETGHKLRAQLLRWSRNSWRSDIKMLFLERSVWRKYPWLAITSLDKMISPFTMVYGPVAVLFISF--------------WEQNMFILIAFMCYIVFTRIIKTIMYFTWSRPRPPVKWLWYIGPFIIVQYWGAVIKLFALCTLKDRRWGNR 441
            C K   L +  +   +   Q+LRW+RN+WRSD++ LF+ER +W  +P++A T +DK+I+PFT++ GP  V ++ +              W     ILI+++ ++  TR  K + +  W+RP+  V    Y+  FI+  Y+ A++KL+ALCTL +  WG R
Sbjct:  259 CCKEAELLSTMKPNWRFLKQVLRWTRNTWRSDLRSLFMERHIWTAHPYVAYTMVDKLINPFTLLVGPCLVSYLIYKSTIPIEKGGYHLPWWN---ILISYLVWLSATRTAKLLPHL-WTRPQDIV----YVPAFILFGYYFAIMKLYALCTLHETGWGTR 410          
BLAST of mRNA_H-elongata_contig161357.3920.1 vs. uniprot
Match: A0A1C7N9B0_9FUNG (N-acetylglucosaminyltransferase n=1 Tax=Choanephora cucurbitarum TaxID=101091 RepID=A0A1C7N9B0_9FUNG)

HSP 1 Score: 103 bits (258), Expect = 4.200e-23
Identity = 56/155 (36.13%), Postives = 93/155 (60.00%), Query Frame = 1
Query:   10 KVCTLSTQFETGHKLRAQLLRWSRNSWRSDIKMLFLERSVWRKYPWLAITSLDKMISPFTMVYGPVAV-LFISFWEQNMF----------ILIAFMCYIVFTRIIKTIMYFTWSRPRPPVKWLWYIGPFIIVQYWGAVIKLFALCTLKDRRWGNR 441
            K   L + F+   +   Q+LRW+RN+WRSD + LF ER +WR++P++A T +DK+ +P T++ GP+ V +F S  EQ             I I+++C+++ TR IK I +F   RP+     +W +  +++  Y+ A++KL+AL TL +  WG R
Sbjct:  265 KEAELYSTFKNNWRFLKQVLRWTRNTWRSDFRSLFTERYIWRRHPYVAFTMVDKIFNPLTLLAGPILVGVFASLQEQKAGPTNPPLPAWNIAISYICWLLVTRFIKLIPHFL-KRPQD----IWALPAWLVFNYYFAIMKLYALFTLHEVGWGTR 414          
BLAST of mRNA_H-elongata_contig161357.3920.1 vs. uniprot
Match: A0A4P9Y7S2_9FUNG (Glycosyltransferase family 2 protein n=1 Tax=Piptocephalis cylindrospora TaxID=1907219 RepID=A0A4P9Y7S2_9FUNG)

HSP 1 Score: 103 bits (257), Expect = 4.850e-23
Identity = 53/155 (34.19%), Postives = 93/155 (60.00%), Query Frame = 1
Query:    4 CRKVCTLSTQFETGHKLRAQLLRWSRNSWRSDIKMLFLERSVWRKYPWLAITSLDKMISPFTMVYGPVAVLFISF--------WEQNMFILIAFMCYIVFTRIIKTIMYFTWSRPRPPVKWLWYIGPFIIVQYWGAVIKLFALCTLKDRRWGNRE 444
            C++   LST F+T      Q+LRW+RN+WRSD + LF ER +W ++P++A T +DK+ +P T++ GP +VL++          W     + +++  +++ TR++K   +  W RP+  +    +I  F++  Y+ A++KL+ALCTL    WG R+
Sbjct:  260 CKEAELLST-FKTNWHFLKQVLRWTRNTWRSDFRSLFTERYIWSRHPYVAFTMVDKLFNPLTLLSGPASVLYLCIRGGYHLPIWN----VWLSYAIWLLATRVVKLTPHL-WKRPQDVI----HIPAFVLFNYYFAIMKLYALCTLHVTAWGTRQ 404          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig161357.3920.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JIZ1_9PHAE1.880e-9187.16Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A3G4ZUE2_9VIRU1.710e-2941.94Glycosyltransferase family 2 protein n=1 Tax=Edafo... [more]
A0A381ZXH2_9ZZZZ3.520e-2945.33Uncharacterized protein n=1 Tax=marine metagenome ... [more]
A0A1Y1Y7Z3_9FUNG4.910e-2537.66Polysaccharide synthase n=2 Tax=Basidiobolus meris... [more]
A0A507DMU1_9FUNG3.580e-2435.81Uncharacterized protein n=2 Tax=Synchytrium endobi... [more]
A0A8H7UDH0_9FUNG8.580e-2435.10Uncharacterized protein n=1 Tax=Umbelopsis vinacea... [more]
B0D1T0_LACBS1.110e-2334.62Glycosyltransferase family 2 protein n=2 Tax=Lacca... [more]
A0A067NUR4_PLEOS2.730e-2335.00Glycosyltransferase family 2 protein n=2 Tax=Pleur... [more]
A0A1C7N9B0_9FUNG4.200e-2336.13N-acetylglucosaminyltransferase n=1 Tax=Choanephor... [more]
A0A4P9Y7S2_9FUNG4.850e-2334.19Glycosyltransferase family 2 protein n=1 Tax=Pipto... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig161357contigH-elongata_contig161357:885..1337 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score282.0
Seed ortholog evalue1.7e-73
Seed eggNOG ortholog2880.D8LC35
EggNOG free text desc.Glycosyltransferase like family 2
EggNOG OGs2CN2Q@1,2QTJK@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal anchor
Ec32 ortholog descriptionNucleotide-diphospho-sugar transferases
Ec32 orthologEc-20_004280.1
Exons1
Model size453
Cds size453
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929946.0497015-CDS-H-elongata_contig161357:884..13371622929946.0497015-CDS-H-elongata_contig161357:884..1337Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig161357 885..1337 -
1691679218.6745708-CDS-H-elongata_contig161357:884..13371691679218.6745708-CDS-H-elongata_contig161357:884..1337Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig161357 885..1337 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig161357.3920.1prot_H-elongata_contig161357.3920.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig161357 885..1337 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig161357.3920.1

>prot_H-elongata_contig161357.3920.1 ID=prot_H-elongata_contig161357.3920.1|Name=mRNA_H-elongata_contig161357.3920.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=151bp
RCRKVCTLSTQFETGHKLRAQLLRWSRNSWRSDIKMLFLERSVWRKYPWL
AITSLDKMISPFTMVYGPVAVLFISFWEQNMFILIAFMCYIVFTRIIKTI
MYFTWSRPRPPVKWLWYIGPFIIVQYWGAVIKLFALCTLKDRRWGNREVK
V
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mRNA from alignment at H-elongata_contig161357:885..1337-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig161357.3920.1 ID=mRNA_H-elongata_contig161357.3920.1|Name=mRNA_H-elongata_contig161357.3920.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=453bp|location=Sequence derived from alignment at H-elongata_contig161357:885..1337- (Himanthalia elongata Himel1 dioecious)
CGCTGCCGCAAGGTGTGTACTTTGTCAACTCAGTTCGAGACGGGCCACAA GCTCCGCGCGCAGCTCCTGCGCTGGAGTCGGAACTCGTGGCGATCCGACA TCAAGATGCTGTTCCTTGAGAGATCGGTTTGGAGAAAGTACCCTTGGCTC GCCATCACCTCGCTCGACAAGATGATATCTCCCTTCACGATGGTCTACGG CCCCGTGGCCGTGCTCTTCATCTCATTCTGGGAGCAGAACATGTTCATCC TGATCGCCTTCATGTGCTACATCGTGTTCACCCGTATTATCAAGACCATC ATGTATTTTACTTGGTCGCGCCCTCGACCCCCCGTCAAATGGCTCTGGTA TATCGGGCCGTTCATAATCGTGCAGTACTGGGGAGCGGTCATCAAGCTCT TCGCCCTGTGCACACTGAAGGACCGGAGGTGGGGCAACCGTGAGGTGAAG GTC
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Coding sequence (CDS) from alignment at H-elongata_contig161357:885..1337-

>mRNA_H-elongata_contig161357.3920.1 ID=mRNA_H-elongata_contig161357.3920.1|Name=mRNA_H-elongata_contig161357.3920.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=906bp|location=Sequence derived from alignment at H-elongata_contig161357:885..1337- (Himanthalia elongata Himel1 dioecious)
CGCTGCCGCAAGGTGTGTACTTTGTCAACTCAGTTCGAGACGGGCCACAA
GCTCCGCGCGCAGCTCCTGCGCTGGAGTCGGAACTCGTGGCGATCCGACA
TCAAGATGCTGTTCCTTGAGAGATCGGTTTGGAGAAAGTACCCTTGGCTC
GCCATCACCTCGCTCGACAAGATGATATCTCCCTTCACGATGGTCTACGG
CCCCGTGGCCGTGCTCTTCATCTCATTCTGGGAGCAGAACATGTTCATCC
TGATCGCCTTCATGTGCTACATCGTGTTCACCCGTATTATCAAGACCATC
ATGTATTTTACTTGGTCGCGCCCTCGACCCCCCGTCAAATGGCTCTGGTA
TATCGGGCCGTTCATAATCGTGCAGTACTGGGGAGCGGTCATCAAGCTCT
TCGCCCTGTGCACACTGAAGGACCGGAGGTGGGGCAACCGTGAGGTGAAG
GTCCGCTGCCGCAAGGTGTGTACTTTGTCAACTCAGTTCGAGACGGGCCA
CAAGCTCCGCGCGCAGCTCCTGCGCTGGAGTCGGAACTCGTGGCGATCCG
ACATCAAGATGCTGTTCCTTGAGAGATCGGTTTGGAGAAAGTACCCTTGG
CTCGCCATCACCTCGCTCGACAAGATGATATCTCCCTTCACGATGGTCTA
CGGCCCCGTGGCCGTGCTCTTCATCTCATTCTGGGAGCAGAACATGTTCA
TCCTGATCGCCTTCATGTGCTACATCGTGTTCACCCGTATTATCAAGACC
ATCATGTATTTTACTTGGTCGCGCCCTCGACCCCCCGTCAAATGGCTCTG
GTATATCGGGCCGTTCATAATCGTGCAGTACTGGGGAGCGGTCATCAAGC
TCTTCGCCCTGTGCACACTGAAGGACCGGAGGTGGGGCAACCGTGAGGTG
AAGGTC
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