mRNA_H-elongata_contig161343.3919.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig161343.3919.1
Unique NamemRNA_H-elongata_contig161343.3919.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig161343.3919.1 vs. uniprot
Match: A0A6H5KTA2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTA2_9PHAE)

HSP 1 Score: 88.2 bits (217), Expect = 5.180e-19
Identity = 42/53 (79.25%), Postives = 46/53 (86.79%), Query Frame = 1 
Query:   13 QVPLEQYFTSDYREPIRDERDNVLDAFTQLPPHLAQTGQLVDLIGNSYPEVCQ 171
            +VPLEQYFTSDYRE +RDER NV+DAFTQ PPHLAQTG LVD IGN+YPE  Q
Sbjct:  664 KVPLEQYFTSDYRELLRDERHNVVDAFTQQPPHLAQTGLLVDHIGNAYPEDVQ 716
[Close]
BLAST of mRNA_H-elongata_contig161343.3919.1 vs. uniprot
Match: D8LEP1_ECTSI (WD-repeat protein, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEP1_ECTSI)

HSP 1 Score: 77.8 bits (190), Expect = 2.350e-15
Identity = 37/45 (82.22%), Postives = 40/45 (88.89%), Query Frame = 1 
Query:   13 QVPLEQYFTSDYREPIRDERDNVLDAFTQLPPHLAQTGQLVDLIG 147
            +VPLEQYFTSDYRE +RDER NV+DAFTQ PPHLAQTG LVD IG
Sbjct:  957 KVPLEQYFTSDYRELLRDERHNVVDAFTQQPPHLAQTGLLVDHIG 1001
[Close]
BLAST of mRNA_H-elongata_contig161343.3919.1 vs. uniprot
Match: A0A2P6V8F8_9CHLO (WD40 YVTN repeat-like-containing domain,Bromodomain isoform n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6V8F8_9CHLO)

HSP 1 Score: 59.7 bits (143), Expect = 5.580e-9
Identity = 28/57 (49.12%), Postives = 39/57 (68.42%), Query Frame = 1 
Query:    4 LIAQVPLEQYFTSDYREPIRDERDNVLDAFTQLPPHLAQTGQLV-DLIGNSYPEVCQ 171
            L+A+ P +Q+F++DY   +RD + NVLDA TQLPPH+    + V D +GN YPE  Q
Sbjct:  823 LLARAPYDQFFSTDYNPLLRDLQHNVLDAVTQLPPHVLTGAEAVCDALGNPYPEPLQ 879
[Close]
BLAST of mRNA_H-elongata_contig161343.3919.1 vs. uniprot
Match: E1ZD54_CHLVA (Bromo domain-containing protein n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1ZD54_CHLVA)

HSP 1 Score: 57.4 bits (137), Expect = 3.650e-8
Identity = 30/65 (46.15%), Postives = 38/65 (58.46%), Query Frame = 1 
Query:    4 LIAQVPLEQYFTSDYREPIRDERDNVLDAFTQLPPHL---------AQTGQLVDLIGNSYPEVCQ 171
            L  + P +Q+F+SDY   +RD + NV+DA TQLPPHL         A  G L D +GN YPE  Q
Sbjct:  811 LFGRAPYDQFFSSDYSPLMRDLQHNVVDAETQLPPHLLEGKAGRECAARGALCDALGNPYPEPLQ 875
[Close]
BLAST of mRNA_H-elongata_contig161343.3919.1 vs. uniprot
Match: A0A7S1T5X7_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1T5X7_9CHLO)

HSP 1 Score: 50.4 bits (119), Expect = 7.730e-6
Identity = 23/49 (46.94%), Postives = 31/49 (63.27%), Query Frame = 1 
Query:   25 EQYFTSDYREPIRDERDNVLDAFTQLPPHLAQTGQLVDLIGNSYPEVCQ 171
            +Q+  +DY   +RD R NVLDA +Q+PPHL    QLV++    YPE  Q
Sbjct:   76 DQFLATDYAHLLRDSRGNVLDADSQVPPHLMPPQQLVNMSSTPYPEPYQ 124
[Close]
BLAST of mRNA_H-elongata_contig161343.3919.1 vs. uniprot
Match: A0A2P6TLB7_CHLSO (Bromodomain and WD repeat-containing 1-like n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TLB7_CHLSO)

HSP 1 Score: 50.4 bits (119), Expect = 1.030e-5
Identity = 25/54 (46.30%), Postives = 36/54 (66.67%), Query Frame = 1 
Query:    4 LIAQVPLEQYFTSDYREPIRDERDNVLDAFTQLPPHLAQTGQ--LVDLIGNSYP 159
            L+++ P +Q+ T+DY   +RD   NV+DA TQLPPH+  TG+  L D +G  YP
Sbjct: 1052 LLSRAPYDQFLTTDYSPLLRDLHHNVVDAETQLPPHIL-TGREALCDALGTPYP 1104
[Close]
BLAST of mRNA_H-elongata_contig161343.3919.1 vs. uniprot
Match: UPI001E689B75 (bromodomain and WD repeat-containing protein 1 n=1 Tax=Maniola jurtina TaxID=191418 RepID=UPI001E689B75)

HSP 1 Score: 48.1 bits (113), Expect = 6.740e-5
Identity = 24/52 (46.15%), Postives = 31/52 (59.62%), Query Frame = 1 
Query:    4 LIAQVPLEQYFTSDYREPIRDERDNVLDAFTQLPPHLAQTGQLVDLIGNSYP 159
            L+AQ+P E +F +DYR   RD     LD  T+LPPHL     LVD+ G  +P
Sbjct:  519 LLAQLPTELFFHTDYRPLARDALGGALDEQTELPPHLMPPPFLVDVEGAPHP 570
[Close]
BLAST of mRNA_H-elongata_contig161343.3919.1 vs. uniprot
Match: UPI001568741B (LOW QUALITY PROTEIN: bromodomain and WD repeat-containing protein 1 n=1 Tax=Aphantopus hyperantus TaxID=2795564 RepID=UPI001568741B)

HSP 1 Score: 48.1 bits (113), Expect = 6.740e-5
Identity = 24/52 (46.15%), Postives = 31/52 (59.62%), Query Frame = 1 
Query:    4 LIAQVPLEQYFTSDYREPIRDERDNVLDAFTQLPPHLAQTGQLVDLIGNSYP 159
            L+AQ+P E +F +DYR   RD     LD  T+LPPHL     LVD+ G  +P
Sbjct:  556 LLAQLPTELFFHTDYRPLARDALGGALDEQTELPPHLMPPPFLVDVEGAPHP 607
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig161343.3919.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6H5KTA2_9PHAE5.180e-1979.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LEP1_ECTSI2.350e-1582.22WD-repeat protein, putative n=1 Tax=Ectocarpus sil... [more]
A0A2P6V8F8_9CHLO5.580e-949.12WD40 YVTN repeat-like-containing domain,Bromodomai... [more]
E1ZD54_CHLVA3.650e-846.15Bromo domain-containing protein n=1 Tax=Chlorella ... [more]
A0A7S1T5X7_9CHLO7.730e-646.94Hypothetical protein (Fragment) n=1 Tax=Tetraselmi... [more]
A0A2P6TLB7_CHLSO1.030e-546.30Bromodomain and WD repeat-containing 1-like n=1 Ta... [more]
UPI001E689B756.740e-546.15bromodomain and WD repeat-containing protein 1 n=1... [more]
UPI001568741B6.740e-546.15LOW QUALITY PROTEIN: bromodomain and WD repeat-con... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig161343contigH-elongata_contig161343:159..329 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score78.6
Seed ortholog evalue1.1e-12
Seed eggNOG ortholog2880.D8LEP1
KEGG koko:K02606,ko:K11797,ko:K11798
KEGG Pathwayko04110,ko04111,ko04113,map04110,map04111,map04113
KEGG ModuleM00284
GOsGO:0001932,GO:0001934,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005829,GO:0006325,GO:0006355,GO:0006357,GO:0006606,GO:0006810,GO:0006886,GO:0006913,GO:0006996,GO:0007010,GO:0007088,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0007346,GO:0008104,GO:0008150,GO:0008284,GO:0008286,GO:0008360,GO:0009719,GO:0009725,GO:0009889,GO:0009891,GO:0009893,GO:0009966,GO:0009967,GO:0009968,GO:0009987,GO:0010033,GO:0010243,GO:0010468,GO:0010556,GO:0010557,GO:0010562,GO:0010564,GO:0010604,GO:0010628,GO:0010638,GO:0010646,GO:0010647,GO:0010648,GO:0010799,GO:0010800,GO:0010941,GO:0015031,GO:0015833,GO:0016043,GO:0017038,GO:0019219,GO:0019220,GO:0019221,GO:0019222,GO:0022603,GO:0022604,GO:0023051,GO:0023052,GO:0023056,GO:0023057,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031399,GO:0031401,GO:0031974,GO:0031981,GO:0032268,GO:0032270,GO:0032868,GO:0032869,GO:0032870,GO:0033036,GO:0033043,GO:0033135,GO:0033138,GO:0033365,GO:0034097,GO:0034504,GO:0034613,GO:0038111,GO:0040008,GO:0042127,GO:0042221,GO:0042325,GO:0042327,GO:0042393,GO:0042886,GO:0042981,GO:0043066,GO:0043067,GO:0043069,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043434,GO:0043567,GO:0043568,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0045787,GO:0045840,GO:0045893,GO:0045931,GO:0045935,GO:0045937,GO:0045944,GO:0046907,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048585,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051128,GO:0051130,GO:0051169,GO:0051170,GO:0051171,GO:0051173,GO:0051174,GO:0051179,GO:0051234,GO:0051246,GO:0051247,GO:0051252,GO:0051254,GO:0051276,GO:0051641,GO:0051649,GO:0051716,GO:0051726,GO:0051781,GO:0051783,GO:0051785,GO:0060255,GO:0060548,GO:0065007,GO:0065008,GO:0070013,GO:0070577,GO:0070727,GO:0070887,GO:0071310,GO:0071345,GO:0071375,GO:0071417,GO:0071495,GO:0071702,GO:0071705,GO:0071840,GO:0072594,GO:0080090,GO:0090068,GO:0098760,GO:0098761,GO:0140030,GO:0140033,GO:1901652,GO:1901653,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1902680,GO:1903506,GO:1903508,GO:2000112,GO:2001141,GO:2001233,GO:2001234,GO:2001236,GO:2001237
EggNOG free text desc.regulation of cell shape
EggNOG OGsCOG2319@1,COG5141@1,KOG0644@2759,KOG0955@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03032,ko04121
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size171
Cds size171
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929946.0052166-CDS-H-elongata_contig161343:158..3291622929946.0052166-CDS-H-elongata_contig161343:158..329Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig161343 159..329 +
1691679218.664345-CDS-H-elongata_contig161343:158..3291691679218.664345-CDS-H-elongata_contig161343:158..329Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig161343 159..329 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig161343.3919.1prot_H-elongata_contig161343.3919.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig161343 159..329 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig161343.3919.1

>prot_H-elongata_contig161343.3919.1 ID=prot_H-elongata_contig161343.3919.1|Name=mRNA_H-elongata_contig161343.3919.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=57bp
MLIAQVPLEQYFTSDYREPIRDERDNVLDAFTQLPPHLAQTGQLVDLIGN
SYPEVCQ
back to top

mRNA from alignment at H-elongata_contig161343:159..329+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig161343.3919.1 ID=mRNA_H-elongata_contig161343.3919.1|Name=mRNA_H-elongata_contig161343.3919.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=171bp|location=Sequence derived from alignment at H-elongata_contig161343:159..329+ (Himanthalia elongata Himel1 dioecious)
ATGTTGATTGCGCAGGTGCCATTGGAGCAGTACTTTACATCCGACTATCG
GGAACCGATTCGGGACGAGCGGGACAACGTGCTCGACGCCTTCACGCAGC
TGCCTCCTCACCTGGCCCAGACCGGTCAGCTCGTGGACCTCATCGGAAAC
TCGTATCCAGAAGTGTGCCAG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig161343:159..329+

>mRNA_H-elongata_contig161343.3919.1 ID=mRNA_H-elongata_contig161343.3919.1|Name=mRNA_H-elongata_contig161343.3919.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=342bp|location=Sequence derived from alignment at H-elongata_contig161343:159..329+ (Himanthalia elongata Himel1 dioecious)
ATGTTGATTGCGCAGGTGCCATTGGAGCAGTACTTTACATCCGACTATCG
GGAACCGATTCGGGACGAGCGGGACAACGTGCTCGACGCCTTCACGCAGC
TGCCTCCTCACCTGGCCCAGACCGGTCAGCTCGTGGACCTCATCGGAAAC
TCGTATCCAGAAGTGTGCCAGATGTTGATTGCGCAGGTGCCATTGGAGCA
GTACTTTACATCCGACTATCGGGAACCGATTCGGGACGAGCGGGACAACG
TGCTCGACGCCTTCACGCAGCTGCCTCCTCACCTGGCCCAGACCGGTCAG
CTCGTGGACCTCATCGGAAACTCGTATCCAGAAGTGTGCCAG
back to top