mRNA_H-elongata_contig16130.3917.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig16130.3917.1
Unique NamemRNA_H-elongata_contig16130.3917.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig16130.3917.1 vs. uniprot
Match: D7FKQ1_ECTSI (Protein tyrosine phosphatase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKQ1_ECTSI)

HSP 1 Score: 310 bits (794), Expect = 6.330e-96
Identity = 152/189 (80.42%), Postives = 165/189 (87.30%), Query Frame = 3 
Query:  543 RAMTTKSAAASRLGKASMSTHPSLVEWKKLRFVIMDAPKANNLHLYLKELKKQNVVCVVRVCEPTYPALEVEAAGMKAREMEYDDGGAPPLEIINKWLDVVQTIFKDASDNSGTNGGQGPAIAVHCVAGLGRAPVLVAIALIEYGKDPIKAVEYIRERRRGAINRKQLSYLDGYVRRSRGNGCATCVIM 1109
            R   T +A       A+MS HPSLVEWKKLRFVIMDAPKANNLHLY++ELKKQNVVCVVRVCEPTYPA EVEAAG+K  EMEYDDGGAPP+EIINKWLDVVQT F +A D+SG NG +GP IAVHCVAGLGRAPVLVAIALIEYGKDPIKAVEYIR+RRRGAINRKQLSYLD Y RRS GNGC++CV+M
Sbjct:   18 RTAPTNTALGRVEAAATMSAHPSLVEWKKLRFVIMDAPKANNLHLYIRELKKQNVVCVVRVCEPTYPASEVEAAGIKLLEMEYDDGGAPPVEIINKWLDVVQTTFHNAPDSSGPNGSEGPTIAVHCVAGLGRAPVLVAIALIEYGKDPIKAVEYIRDRRRGAINRKQLSYLDSYERRSSGNGCSSCVVM 206
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BLAST of mRNA_H-elongata_contig16130.3917.1 vs. uniprot
Match: A0A6H5KJ35_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ35_9PHAE)

HSP 1 Score: 304 bits (778), Expect = 1.970e-93
Identity = 147/174 (84.48%), Postives = 160/174 (91.95%), Query Frame = 3 
Query:  588 ASMSTHPSLVEWKKLRFVIMDAPKANNLHLYLKELKKQNVVCVVRVCEPTYPALEVEAAGMKAREMEYDDGGAPPLEIINKWLDVVQTIFKDASDNSGTNGGQGPAIAVHCVAGLGRAPVLVAIALIEYGKDPIKAVEYIRERRRGAINRKQLSYLDGYVRRSRGNGCATCVIM 1109
            A+MS HPSLVEWKKLRFVIMDAPKANNLHLY++ELKKQNVVCVVRVCEPTYPA EVEAAGMK  EMEYDDGGAPP+EIINKWL+VV+T F +A D+SG NG +GP IAVHCVAGLGRAPVLVAIALIEYGKDPIKAVEYIR+RRRGAINRKQLSYLD Y RRS GN C++CV+M
Sbjct:   44 ATMSAHPSLVEWKKLRFVIMDAPKANNLHLYIRELKKQNVVCVVRVCEPTYPASEVEAAGMKLLEMEYDDGGAPPVEIINKWLNVVKTTFHNAPDSSGPNGSEGPTIAVHCVAGLGRAPVLVAIALIEYGKDPIKAVEYIRDRRRGAINRKQLSYLDSYERRSSGNSCSSCVVM 217
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BLAST of mRNA_H-elongata_contig16130.3917.1 vs. uniprot
Match: A0A835ZE75_9STRA (Protein tyrosine phosphatase type IVA protein 1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZE75_9STRA)

HSP 1 Score: 199 bits (507), Expect = 2.220e-55
Identity = 113/180 (62.78%), Postives = 126/180 (70.00%), Query Frame = 3 
Query:  591 SMSTHPSLVEW-----KKLRFVIMDAPKANNLHLYLKELKKQNVVCVVRVCEPTYPALEVEAAGMKAREMEYDDGGAPPLEIINKWLDVVQ-TIFKDASDNSGTNGGQGPAIAVHCVAGLGRAPVLVAIALIEYGKDPIKAVEYIRERRRGAINRKQLSYLDGYV-RRSRGNGCATCVIM 1109
            S++T PSL+EW     +KL F+IMDAPKA+NL LYLKE K+ NVV +VRVCE TYPA EV  AG+    MEY DG APP EIIN+WLDVV  T                P IAVHCVAGLGRAPVLVAIALIE G DPI AVEYIRERRRGAINRKQL+YL+ Y   R R  G  TC +M
Sbjct:    8 SLATRPSLIEWANKKGRKLSFLIMDAPKAHNLQLYLKECKRHNVVSMVRVCEDTYPAEEVTRAGIDMHHMEYPDGDAPPQEIINQWLDVVDVTGXXXXXXXXXXXXXXXPTIAVHCVAGLGRAPVLVAIALIESGMDPIHAVEYIRERRRGAINRKQLTYLERYAPTRHRRRG--TCAVM 185
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BLAST of mRNA_H-elongata_contig16130.3917.1 vs. uniprot
Match: A0A835YN25_9STRA (Protein tyrosine phosphatase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YN25_9STRA)

HSP 1 Score: 199 bits (505), Expect = 6.790e-55
Identity = 114/187 (60.96%), Postives = 131/187 (70.05%), Query Frame = 3 
Query:  588 ASMSTHPSLVEW-----KKLRFVIMDAPKANNLHLYLKELKKQNVVCVVRVCEPTYPALEVEAAGMKAREMEYDDGGAPPLEIINKWLDVVQTIFKD----ASDNSGTNG-------GQGPAIAVHCVAGLGRAPVLVAIALIEYGKDPIKAVEYIRERRRGAINRKQLSYLDGYVR-RSRGNGCAT 1097
            +S++T PSLVEW     +KL F+IMDAPKA+NL +YLKE KK NVV +VRVCE TYPA EVE AG+   EMEYDDG APP EII  WLDVV   F+     A+D+    G       G  P +AVHCVAGLGRAPVLVAIALIE G +  +AVEYIR RRRGAINRKQLSYL+ Y R R +G    T
Sbjct:    7 SSLATKPSLVEWVNRKGRKLSFLIMDAPKAHNLPIYLKECKKHNVVRMVRVCEKTYPADEVERAGIAMSEMEYDDGMAPPPEIIRSWLDVVDATFRSGGPSANDSMHAGGXXXXXXEGGTPTVAVHCVAGLGRAPVLVAIALIENGMESSEAVEYIRARRRGAINRKQLSYLEQYQRIRHKGGSLET 193
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BLAST of mRNA_H-elongata_contig16130.3917.1 vs. uniprot
Match: H3GU63_PHYRM (Uncharacterized protein n=24 Tax=Peronosporaceae TaxID=4777 RepID=H3GU63_PHYRM)

HSP 1 Score: 189 bits (480), Expect = 6.820e-52
Identity = 102/168 (60.71%), Postives = 126/168 (75.00%), Query Frame = 3 
Query:  606 PSLVEWKKLRFVIMDAPKANNLHLYLKELKKQNVVCVVRVCEPTYPALEVEAAGMKAREMEYDDGGAPPLEIINKWLDVVQTIFKDASDNSGTNGGQGPAIAVHCVAGLGRAPVLVAIALIEYGKDPIKAVEYIRERRRGAINRKQLSYLDGYVRRSRGNGCATCVIM 1109
            P++V+W+ L FVIMDAP  +NLH+YLKELKK NV  +VR CE TY +  VEAAG+   E+E+ DG +P  EI+++WLD+V+  FKD S ++  N     +IAVHCVAGLGRAPVLVAIALIEYG DPI AVE+IR+ RRGAIN +QL YL+ Y  R RGN  A CVIM
Sbjct:    8 PTMVKWEHLSFVIMDAPNDSNLHIYLKELKKHNVTDLVRACEVTYSSESVEAAGIHVHELEFPDGESPDPEILDQWLDLVEECFKDNSIDAKNN----KSIAVHCVAGLGRAPVLVAIALIEYGLDPINAVEHIRKFRRGAINLRQLKYLEKYQPR-RGNK-AKCVIM 169
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BLAST of mRNA_H-elongata_contig16130.3917.1 vs. uniprot
Match: A0A0P1AB79_PLAHL (Protein tyrosine phosphatase n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AB79_PLAHL)

HSP 1 Score: 187 bits (475), Expect = 3.300e-51
Identity = 102/168 (60.71%), Postives = 123/168 (73.21%), Query Frame = 3 
Query:  606 PSLVEWKKLRFVIMDAPKANNLHLYLKELKKQNVVCVVRVCEPTYPALEVEAAGMKAREMEYDDGGAPPLEIINKWLDVVQTIFKDASDNSGTNGGQGPAIAVHCVAGLGRAPVLVAIALIEYGKDPIKAVEYIRERRRGAINRKQLSYLDGYVRRSRGNGCATCVIM 1109
            P+LV+W+ L FVIMDAP  +NLH+YLKELKK NV  +VR CE TY    VEAAG+   E+E+ DG +P  +I++ WLD+V+  FKD   NS +N     +IAVHCVAGLGRAPVLVAIALIEYG DPI AVE+IR+ RRGAIN +QL YL+ Y  R RGN  A C IM
Sbjct:    8 PTLVKWEHLSFVIMDAPNDSNLHIYLKELKKYNVSDLVRACEVTYSREAVEAAGIHVHELEFPDGESPDPDILDMWLDLVENCFKDNVSNSNSN----RSIAVHCVAGLGRAPVLVAIALIEYGLDPINAVEHIRKFRRGAINLRQLKYLEKYQPR-RGNK-AKCTIM 169
[Close]
BLAST of mRNA_H-elongata_contig16130.3917.1 vs. uniprot
Match: A0A8K1FCX2_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FCX2_PYTOL)

HSP 1 Score: 186 bits (473), Expect = 6.190e-51
Identity = 102/173 (58.96%), Postives = 125/173 (72.25%), Query Frame = 3 
Query:  591 SMSTHPSLVEWKKLRFVIMDAPKANNLHLYLKELKKQNVVCVVRVCEPTYPALEVEAAGMKAREMEYDDGGAPPLEIINKWLDVVQTIFKDASDNSGTNGGQGPAIAVHCVAGLGRAPVLVAIALIEYGKDPIKAVEYIRERRRGAINRKQLSYLDGYVRRSRGNGCATCVIM 1109
            + +  P+LV+W++L FVIMDAP  +NLHLYLKELKK NV  +VR CE TY    VEAAG++  EME+ DG  P  EI++KWLD+V   FKD    S +N     +IAVHCVAGLGRAPVLVAIALIE+G DPI AVE+IR+ RRGAIN +QL YL+ Y   SRG+  + C IM
Sbjct:    3 AQTNKPTLVQWEELSFVIMDAPNNSNLHLYLKELKKYNVTELVRACEVTYGREGVEAAGIRVHEMEFPDGEPPDAEILDKWLDLVSETFKDNKAGSRSN----KSIAVHCVAGLGRAPVLVAIALIEHGLDPINAVEHIRKHRRGAINLRQLKYLEKYEP-SRGHK-SKCSIM 169
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BLAST of mRNA_H-elongata_contig16130.3917.1 vs. uniprot
Match: K3X7X2_GLOUD (Uncharacterized protein n=2 Tax=Pythiaceae TaxID=4782 RepID=K3X7X2_GLOUD)

HSP 1 Score: 183 bits (464), Expect = 1.050e-49
Identity = 101/168 (60.12%), Postives = 122/168 (72.62%), Query Frame = 3 
Query:  606 PSLVEWKKLRFVIMDAPKANNLHLYLKELKKQNVVCVVRVCEPTYPALEVEAAGMKAREMEYDDGGAPPLEIINKWLDVVQTIFKDASDNSGTNGGQGPAIAVHCVAGLGRAPVLVAIALIEYGKDPIKAVEYIRERRRGAINRKQLSYLDGYVRRSRGNGCATCVIM 1109
            P+LV+W+ L FVIMDAP  +NLHLYLKELKK NV  +VR CE TY    VEAAG+   E+E+ DG  P  +I++KWLD+V   FKD   +S +N     +IAVHCVAGLGRAPVLVAIALIE+G DPI AVE+IR+ RRGAIN +QL YL+ Y  R RG+  A C IM
Sbjct:    8 PTLVQWEHLSFVIMDAPNDSNLHLYLKELKKHNVTDLVRACEVTYSRESVEAAGIHVHELEFPDGEPPDGDILDKWLDLVSDCFKDNKIDSKSN----KSIAVHCVAGLGRAPVLVAIALIEFGLDPINAVEHIRKFRRGAINLRQLKYLEKYQPR-RGHK-AKCSIM 169
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BLAST of mRNA_H-elongata_contig16130.3917.1 vs. uniprot
Match: A0A7S3GSY3_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GSY3_9STRA)

HSP 1 Score: 182 bits (462), Expect = 2.100e-49
Identity = 97/173 (56.07%), Postives = 119/173 (68.79%), Query Frame = 3 
Query:  591 SMSTHPSLVEWKKLRFVIMDAPKANNLHLYLKELKKQNVVCVVRVCEPTYPALEVEAAGMKAREMEYDDGGAPPLEIINKWLDVVQTIFKDASDNSGTNGGQGPAIAVHCVAGLGRAPVLVAIALIEYGKDPIKAVEYIRERRRGAINRKQLSYLDGYVRRSRGNGCATCVIM 1109
            S+   PSL+EW  LR +IMDAPK +NLHLYLK+ KK NV  +VR+ EP+Y   EVE +G+   EM Y DG +PP ++I +WL    T+  D  DN G +  + P IA+HCVAGLGRAPVLVAIALIEYG D I AV +IRERRRGAIN  QL+YL+ Y +  R  G   C IM
Sbjct:    6 SLVNKPSLIEWGPLRLLIMDAPKDSNLHLYLKQCKKSNVTSIVRISEPSYSREEVEKSGIALHEMYYPDGHSPPPDVIARWL----TVLADTFDNKGPD--ETPCIAIHCVAGLGRAPVLVAIALIEYGMDAISAVTFIRERRRGAINTVQLNYLESY-KPMRKKGDKKCTIM 171
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BLAST of mRNA_H-elongata_contig16130.3917.1 vs. uniprot
Match: A0A7R9Y7Z4_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9Y7Z4_9STRA)

HSP 1 Score: 182 bits (463), Expect = 2.250e-49
Identity = 101/186 (54.30%), Postives = 128/186 (68.82%), Query Frame = 3 
Query:  555 TKSAAASRLGKASMSTHPSLVEWKKLRFVIMDAPKANNLHLYLKELKKQNVVCVVRVCEPTYPALEVEAAGMKAREMEYDDGGAPPLEIINKWLDVVQTIFKDASDNSGTNGGQGPAIAVHCVAGLGRAPVLVAIALIEYGK-DPIKAVEYIRERRRGAINRKQLSYLDGYVRRSRGNGCATCVIM 1109
            ++S  +  L   S++  PSLVE   +RF+I+DAPK ++L  YL E KK NVV +VRVC+PTY A  VE+AG+   EMEY DG  PP E+I+KWLDVV+  F   S  +     + P IAVHCVAGLGRAPVLVAIALIE+   +P +AV  IR++RRGAIN KQL YL+ YV  +R  G  +CVIM
Sbjct:    2 SRSNGSVELNTVSLAGRPSLVEVDDMRFLILDAPKEHDLPQYLLECKKNNVVHLVRVCQPTYNAEHVESAGIHMHEMEYADGSHPPQEVIDKWLDVVEQTF---SAKAVAKADEKPCIAVHCVAGLGRAPVLVAIALIEFAALEPTEAVTLIRKQRRGAINSKQLQYLESYVA-TRAGGACSCVIM 183
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig16130.3917.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FKQ1_ECTSI6.330e-9680.42Protein tyrosine phosphatase n=1 Tax=Ectocarpus si... [more]
A0A6H5KJ35_9PHAE1.970e-9384.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835ZE75_9STRA2.220e-5562.78Protein tyrosine phosphatase type IVA protein 1 n=... [more]
A0A835YN25_9STRA6.790e-5560.96Protein tyrosine phosphatase n=1 Tax=Tribonema min... [more]
H3GU63_PHYRM6.820e-5260.71Uncharacterized protein n=24 Tax=Peronosporaceae T... [more]
A0A0P1AB79_PLAHL3.300e-5160.71Protein tyrosine phosphatase n=1 Tax=Plasmopara ha... [more]
A0A8K1FCX2_PYTOL6.190e-5158.96Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
K3X7X2_GLOUD1.050e-4960.12Uncharacterized protein n=2 Tax=Pythiaceae TaxID=4... [more]
A0A7S3GSY3_9STRA2.100e-4956.07Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A7R9Y7Z4_9STRA2.250e-4954.30Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig16130contigH-elongata_contig16130:2437..5801 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score191.8
Seed ortholog evalue2.9e-46
Seed eggNOG ortholog4787.PITG_05251T0
Preferred namePTP4A2
KEGG koko:K01104,ko:K18041
GOsGO:0000323,GO:0001667,GO:0003008,GO:0003013,GO:0003018,GO:0003674,GO:0003824,GO:0004721,GO:0004725,GO:0004727,GO:0005575,GO:0005576,GO:0005615,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005768,GO:0005769,GO:0005773,GO:0005783,GO:0005819,GO:0005829,GO:0005856,GO:0005886,GO:0005929,GO:0006355,GO:0006464,GO:0006470,GO:0006793,GO:0006796,GO:0006807,GO:0006928,GO:0007154,GO:0007165,GO:0007166,GO:0007219,GO:0008015,GO:0008138,GO:0008150,GO:0008152,GO:0009889,GO:0009898,GO:0009966,GO:0009967,GO:0009987,GO:0010033,GO:0010468,GO:0010556,GO:0010631,GO:0010646,GO:0010647,GO:0012505,GO:0015630,GO:0016020,GO:0016311,GO:0016477,GO:0016787,GO:0016788,GO:0016791,GO:0018995,GO:0019219,GO:0019222,GO:0019538,GO:0020016,GO:0020023,GO:0023051,GO:0023052,GO:0023056,GO:0030334,GO:0030335,GO:0030430,GO:0031323,GO:0031326,GO:0031410,GO:0031910,GO:0031982,GO:0032501,GO:0032879,GO:0032880,GO:0033643,GO:0033646,GO:0034097,GO:0035335,GO:0036211,GO:0040011,GO:0040012,GO:0040017,GO:0042221,GO:0042578,GO:0042995,GO:0043114,GO:0043117,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043230,GO:0043231,GO:0043232,GO:0043412,GO:0043542,GO:0043656,GO:0043657,GO:0043687,GO:0044215,GO:0044216,GO:0044217,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044421,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044459,GO:0044463,GO:0044464,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0048870,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051179,GO:0051252,GO:0051270,GO:0051272,GO:0051674,GO:0051716,GO:0060255,GO:0065007,GO:0065008,GO:0070062,GO:0070201,GO:0070887,GO:0071310,GO:0071345,GO:0071704,GO:0071944,GO:0080090,GO:0090130,GO:0090132,GO:0090287,GO:0097708,GO:0098552,GO:0098562,GO:0120025,GO:0120038,GO:0140096,GO:1900746,GO:1901222,GO:1901224,GO:1901564,GO:1902531,GO:1902533,GO:1902547,GO:1903506,GO:1903561,GO:1904951,GO:1990823,GO:1990830,GO:2000112,GO:2000145,GO:2000147,GO:2001141
EggNOG free text desc.protein tyrosine phosphatase activity
EggNOG OGs3QAQB@4776,KOG2836@1,KOG2836@2759
EC3.1.3.48
COG Functional cat.T
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01009
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionprotein tyrosine phosphatase
Ec32 orthologEc-21_001700.1
Exons3
Model size2886
Cds size564
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig16130.3917.1prot_H-elongata_contig16130.3917.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig16130 2985..4027 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929945.821595-UTR-H-elongata_contig16130:2436..29841622929945.821595-UTR-H-elongata_contig16130:2436..2984Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig16130 2437..2984 +
1691679218.5750396-UTR-H-elongata_contig16130:2436..29841691679218.5750396-UTR-H-elongata_contig16130:2436..2984Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig16130 2437..2984 +
1622929945.875548-UTR-H-elongata_contig16130:4027..58011622929945.875548-UTR-H-elongata_contig16130:4027..5801Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig16130 4028..5801 +
1691679218.6169193-UTR-H-elongata_contig16130:4027..58011691679218.6169193-UTR-H-elongata_contig16130:4027..5801Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig16130 4028..5801 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929945.834716-CDS-H-elongata_contig16130:2984..32181622929945.834716-CDS-H-elongata_contig16130:2984..3218Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16130 2985..3218 +
1691679218.587582-CDS-H-elongata_contig16130:2984..32181691679218.587582-CDS-H-elongata_contig16130:2984..3218Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16130 2985..3218 +
1622929945.8458107-CDS-H-elongata_contig16130:3388..35861622929945.8458107-CDS-H-elongata_contig16130:3388..3586Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16130 3389..3586 +
1691679218.5993688-CDS-H-elongata_contig16130:3388..35861691679218.5993688-CDS-H-elongata_contig16130:3388..3586Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16130 3389..3586 +
1622929945.8618326-CDS-H-elongata_contig16130:3895..40271622929945.8618326-CDS-H-elongata_contig16130:3895..4027Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16130 3896..4027 +
1691679218.6096854-CDS-H-elongata_contig16130:3895..40271691679218.6096854-CDS-H-elongata_contig16130:3895..4027Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16130 3896..4027 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig16130.3917.1

>prot_H-elongata_contig16130.3917.1 ID=prot_H-elongata_contig16130.3917.1|Name=mRNA_H-elongata_contig16130.3917.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=188bp
MTTKSAAASRLGKASMSTHPSLVEWKKLRFVIMDAPKANNLHLYLKELKK
QNVVCVVRVCEPTYPALEVEAAGMKAREMEYDDGGAPPLEIINKWLDVVQ
TIFKDASDNSGTNGGQGPAIAVHCVAGLGRAPVLVAIALIEYGKDPIKAV
EYIRERRRGAINRKQLSYLDGYVRRSRGNGCATCVIM*
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mRNA from alignment at H-elongata_contig16130:2437..5801+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig16130.3917.1 ID=mRNA_H-elongata_contig16130.3917.1|Name=mRNA_H-elongata_contig16130.3917.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3365bp|location=Sequence derived from alignment at H-elongata_contig16130:2437..5801+ (Himanthalia elongata Himel1 dioecious)
GCCAGAGTTGCGCGACCAGCTCTTCATCGAGTCCAAGGATTCCAGGTGCC
GCTTTCATGTTCTGCATACCTTTAACGTGCATCTCATGGACCTGGCGGAG
GAACGGTTCCCGCATCCCGAGACGCATCCGTTTGGTCGCAGCACGCTTAG
CAAATACGAATCGTTGTGCATGACTACTGTTGCAGTATCCATGACGATGT
TGAGGTGCTGCAAGGCGGCCAGCCCGCAGCCATCGCTTCGGCATCATTCA
TGTACCGTGTCTGCACGTTGCTGCGTGATGTTTGTGTCGTGGAGTGTCGC
CGTGATCCAACTTTGAACCCTTCCGATAATATGTCTTGTTTTTAAAAGGC
AAGTAACTCCTTTTCAGGCAAAGCAACTTTTCTTCCAGAATCCAACTTTT
TTCCCCGCGAGGCCATCTTGAAGCCAAAAAAGAGTGCACGACATTTTCTT
ATTTTTCACAAGTGGACTGGAAAAACCAACCATCTGATGACATCATCTTT
CGTGTGGCTATCTCTCTTGTGTAACGGTGACTAAAACTGTAAAGGGCCAT
GACTACCAAGAGTGCTGCCGCTTCGAGGTTGGGAAAGGCTAGCATGTCTA
CTCACCCGTCACTGGTGGAATGGAAGAAGCTTCGATTCGTAATCATGGAC
GCTCCGAAGGCCAATAACCTTCACCTTTACCTCAAAGAGCTCAAAAAGCA
GAATGTGGTGTGTGTTGTGCGAGTCTGTGAGCCGACCTACCCAGCCTTGG
AGGTTGAAGCAGCTGGAATGAAGGCAAGAGAAGTGACACAACACACGGTG
GAACGAATAAACTGATATACCTCGGCTGCCCCCAGTGTACATGCTGCAGA
GTGTAGGTCATGTAAAGGTAGATCTCTATGCATGCAACACCACACCACGC
TTGACTTGGGCATGACTTGGATTTGATTTGGCTTGACTTGCAGCTGATGG
AGATGGAGTATGATGACGGTGGTGCTCCACCCTTGGAGATCATTAACAAG
TGGCTCGACGTTGTGCAAACCATCTTCAAGGACGCCTCCGACAACTCCGG
AACCAACGGCGGGCAAGGTCCAGCGATCGCAGTGCATTGCGTAGCGGGGC
TAGGGCGGGCGCCAGTTTTGGTAGCCATTGCCCTCATCGAGTATGGAAAG
GTGAGGCCCTAGTAGATGTCCCTATCTTATCGCTACACTAACGCCTTATC
GAGGATGATGAATCCTAAAGACACAGACCCCGGTGCCTGCGAGTTATGTA
ATATTTCAACAATGGTACTACAATACTGAAACGCGCCCATCTTATCAAAA
TACGGTCAGAGCAAGACAGTGAGACAACTATGGCTCAGCCGTGTCCGGTT
TTCGGAAAGTTGCATTGAAAGCCTACCCCTATCTCATCCCTCTCGTGTTA
TGACGTCTGGTTTTCTCTTTTTCGTGTTTGGTTGCTGTGGGCAACTCATG
TCTGGTTAGGACCCCATCAAGGCAGTTGAGTACATCCGTGAACGACGCCG
GGGCGCCATCAACCGGAAGCAACTTTCGTACCTAGATGGCTACGTGCGAA
GGAGCCGGGGAAACGGCTGCGCTACCTGCGTTATCATGTAAAGCACGATA
CGGTCTGTTTATTATTGACTTTCTTTAACTGTTCTGGTACGTTGTATCCA
TGAGTTGGTGGTCATCAAGGCCTACGGTAATCGCGCGCGCTGACGTCGCG
AGAGCGATGGAGGCGGAGAGGAAGGTTTGCCAGCTAGCTACTATGCGGGC
CATGATACGCATTTTTCACTCCTTTTCGTGGGGCAGTTTTTTGTAGCCAA
TGGTGAAATTCGTCTTATGTTTTGTGAAGATCTCGATCTAGGTCCCGCGT
ATGCAAGAGGAAGGTAGCAAAGGCTTTTTGAAACATGTAAGGTCCCCCCT
TCCTCATTTGGGTTCTAGTATATAACCTCCCCGTAGTATCGCCCCCTCTC
CGTGTCCTGAGGTTACAGGGCAAAGCAGGCAATCTTTGGATCGTTAAAGG
TTATAGGATGTCAAATTGCTTTACTACTTGCCTTTGCGGGTAACTCAGGG
AGATTCACTCCGAGCAAAGTCAGCCAGGACCCAGGGAGACGACCTAGGGA
CGGAAAAGGTCGAAGCAGCAGCAGCACCAGACACTCGAACGTTGAGATCT
CGGGTTACATGCTTTAAAATGTATTTGTGCGTTTCAAAATGAAAGGCGCG
TTTGGCACACAGACCAAATTTGAGACCCGTGACAGGTTTTTTACTGCGAC
AGCGCCAAGGGTTTCTGTTCCCCACCACGGCCGCTCGCTCGTGCAGTCGG
TCATAGCTTTGACGGTCTGCAAAGCGCCCTTCTAACGACGTCCCCGTCAA
CGTGCAGAAGTCTGTGCTCGAGTCTGTAGTTTTTTGTGTCCCAAGAAAGG
ATTGCTGACGCGTCCGAAAAGGTTTAGTTAGGGCGGCGAGTAACAGACAC
GCACGTTGGTAGCACCAAAACTCCAGGGCATGAAAGGTGGCAAGATAGCG
CATAGTGATTTTCAATCCTTGCGATGAAACATGGATGTAGAACCTAAAAC
GAGATTTTGGCCACGATGCAGCACAGCATAGTAAATCACCAGAAAGAAGG
GACATAAGTCGTGCCACGAACTAAAACGATTATCGTAATGATATTTGGTC
AGTCAAAGCAACAGAAGCTTGGCTTGAGATTCTTCAACGTAACAAAAAAA
TGGGACGGGGAGGGGCTTGGAAGAAGTGGTGGATATAGTCTGAAAGAAGG
GGCGGATCGAAATTGACAGTTGGTTCGCACATAAAACTAGGTGTATGTAG
GTAGGGGAGCGGGCACAAACTGCACCACTAGGTACATCGGCAGAGGTTGT
GTCTGCTAAATATTGTTAAGGGCTATCATACGCACCCGATTCCGGGGGCG
GCATCGGAAAGAAATGAAGTTCGGCATGACCTTGATGTCGAACGCATTGT
TTTTGCTACTGTACTTGATAATGTGAAATCGCGACGTAGCGTCGAAGGTG
ATTTCGGGCCCTGTGCCTTCGGACATCAAGTAAAAGTGGAATGTGGTCCT
TTTTCTTCTTGTAACAGGACCATGGGTTGATGTCGATGTCTACACTCATA
ACATATACTGTACTGAAATAATGTGAAATACGCGCACCAATTTGTCGATC
GGCCATAAAAACAAATAAATACAAGCACCATTGTGGGGAAAGTTCAAGAA
GACATGACTATGCAGCAGGTTAGCATTTATTGACGCCCAGACTCGTGGAG
ATCTCGCATCATTCTCCATAGCTTGCGAAGATCTCTCGCCTCACAGTTGA
CAGGAAATTCATGCTTAAAACGCAAATTATCCCTAAATGGTAAAATATTA
CTCTGTACTAGAAGC
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Coding sequence (CDS) from alignment at H-elongata_contig16130:2437..5801+

>mRNA_H-elongata_contig16130.3917.1 ID=mRNA_H-elongata_contig16130.3917.1|Name=mRNA_H-elongata_contig16130.3917.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1128bp|location=Sequence derived from alignment at H-elongata_contig16130:2437..5801+ (Himanthalia elongata Himel1 dioecious)
ATGACTACCAAGAGTGCTGCCGCTTCGAGGTTGGGAAAGGCTAGCATGTC
TACTCACCCGTCACTGGTGGAATGGAAGAAGCTTCGATTCGTAATCATGG
ACGCTCCGAAGGCCAATAACCTTCACCTTTACCTCAAAGAGCTCAAAAAG
CAGAATGTGGTGTGTGTTGTGCGAGTCTGTGAGCCGACCTACCCAGCCTT
GGAGGTTGAAGCAGCTGGAATGAAGGCAAGAGAAATGACTACCAAGAGTG
CTGCCGCTTCGAGGTTGGGAAAGGCTAGCATGTCTACTCACCCGTCACTG
GTGGAATGGAAGAAGCTTCGATTCGTAATCATGGACGCTCCGAAGGCCAA
TAACCTTCACCTTTACCTCAAAGAGCTCAAAAAGCAGAATGTGGTGTGTG
TTGTGCGAGTCTGTGAGCCGACCTACCCAGCCTTGGAGGTTGAAGCAGCT
GGAATGAAGGCAAGAGAAATGGAGTATGATGACGGTGGTGCTCCACCCTT
GGAGATCATTAACAAGTGGCTCGACGTTGTGCAAACCATCTTCAAGGACG
CCTCCGACAACTCCGGAACCAACGGCGGGCAAGGTCCAGCGATCGCAGTG
CATTGCGTAGCGGGGCTAGGGCGGGCGCCAGTTTTGGTAGCCATTGCCCT
CATCGAGTATGGAAAGATGGAGTATGATGACGGTGGTGCTCCACCCTTGG
AGATCATTAACAAGTGGCTCGACGTTGTGCAAACCATCTTCAAGGACGCC
TCCGACAACTCCGGAACCAACGGCGGGCAAGGTCCAGCGATCGCAGTGCA
TTGCGTAGCGGGGCTAGGGCGGGCGCCAGTTTTGGTAGCCATTGCCCTCA
TCGAGTATGGAAAGGACCCCATCAAGGCAGTTGAGTACATCCGTGAACGA
CGCCGGGGCGCCATCAACCGGAAGCAACTTTCGTACCTAGATGGCTACGT
GCGAAGGAGCCGGGGAAACGGCTGCGCTACCTGCGTTATCATGTAAGACC
CCATCAAGGCAGTTGAGTACATCCGTGAACGACGCCGGGGCGCCATCAAC
CGGAAGCAACTTTCGTACCTAGATGGCTACGTGCGAAGGAGCCGGGGAAA
CGGCTGCGCTACCTGCGTTATCATGTAA
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