mRNA_H-elongata_contig161211.3912.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig161211.3912.1 vs. uniprot
Match: A0A6H5JBD7_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBD7_9PHAE) HSP 1 Score: 145 bits (365), Expect = 7.880e-37 Identity = 85/189 (44.97%), Postives = 114/189 (60.32%), Query Frame = 1
Query: 1 ITVAIHNVRTMAVDGKHGVERALDVFNVYDRLGYDVIGLQETRRSGHSVFNQAGYLGYCSG-ECGGENG--LAIRTSITRTAR-PPEFISDRLLKVTLELRGRAKAITFFVAYAPIETQNVSNKHAFWTSLDRAVEEVPRHEHLFVLMDANARTGMREKGQVGSKDSKIIGAYGRDTLNDNGELLLSFA 555
+ VA NVRT+AV G +G RA V + R V+G+QETRR+G + F AG+ +C G E GG +G +A++ S+ +T+ EFI +RL+ + L L G A+ F A AP E S+K FW LD V +P E ++VL+DANARTG R G D ++IG YGRD LNDNG LLL+FA
Sbjct: 58 LRVATWNVRTLAVIGVNGYGRAYSVLHEAARQDVSVVGMQETRRAGRTEFAAAGFRVFCCGTETGGVHGVGIAVKESLCKTSTFTTEFIDERLMAMRLLLAGHRGAVNFVAASAPTEPSTASSKRVFWGKLDSLVRRIPSKECVYVLLDANARTGDRLDGG----DGRVIGMYGRDELNDNGMLLLNFA 242
BLAST of mRNA_H-elongata_contig161211.3912.1 vs. uniprot
Match: A0A6H5KQZ7_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQZ7_9PHAE) HSP 1 Score: 141 bits (356), Expect = 8.840e-36 Identity = 75/189 (39.68%), Postives = 115/189 (60.85%), Query Frame = 1
Query: 1 ITVAIHNVRTMAVDGKHGVERALDVFNVYDRLGYDVIGLQETRRSGHSVFNQAGYLGY-CSGECGGENG--LAIRTSITRTAR-PPEFISDRLLKVTLELRGRAKAITFFVAYAPIETQNVSNKHAFWTSLDRAVEEVPRHEHLFVLMDANARTGMREKGQVGSKDSKIIGAYGRDTLNDNGELLLSFA 555
+ VA +NVRT+AV+G +G RA V + + G +GLQE RR G + F +G+ + C + GG +G +A+ ++ ++++ E++ +RL+ + E+ G A+TF AYAP + +KH FW LD V P E+LFVLMDANA+TG G + ++ + +G YGR+ LNDNG LLL+FA
Sbjct: 74 VRVATYNVRTLAVNGANGYGRADSVLHEAAKQGISFVGLQEVRRPGRTEFAASGFRVFTCGTDKGGTHGVGIAVEETLCKSSQYTTEYVDERLMAMRFEMMGHRGAVTFVAAYAPTDVATTESKHMFWEKLDSLVRRTPAKEYLFVLMDANAQTG----GGIAGENERTMGEYGRNELNDNGRLLLTFA 258
BLAST of mRNA_H-elongata_contig161211.3912.1 vs. uniprot
Match: A0A6H5K319_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K319_9PHAE) HSP 1 Score: 141 bits (356), Expect = 1.430e-35 Identity = 75/189 (39.68%), Postives = 116/189 (61.38%), Query Frame = 1
Query: 1 ITVAIHNVRTMAVDGKHGVERALDVFNVYDRLGYDVIGLQETRRSGHSVFNQAGYLGY-CSGECGGENG--LAIRTSITRTAR-PPEFISDRLLKVTLELRGRAKAITFFVAYAPIETQNVSNKHAFWTSLDRAVEEVPRHEHLFVLMDANARTGMREKGQVGSKDSKIIGAYGRDTLNDNGELLLSFA 555
+ VA +NVRT+AV+G +G RA V + + G +GLQE RR G + F +G+ + C + GG +G +A+ ++ ++++ E++ +RL+ + E+ G A+TF AYAP + +KH FW LD V +P E+LFVLMDANA+TG G + ++ +G YGR+ LN+NGELLL+FA
Sbjct: 306 VRVATYNVRTLAVNGANGYGRADSVLHEAAKQGISFVGLQEVRRPGRTEFAASGFRVFTCGTDKGGTHGVGIAVEETLCKSSQYTTEYVDERLMAMRFEMMGHRGAVTFVAAYAPTDVATTESKHMFWEKLDSLVRRIPAKEYLFVLMDANAQTG----GGIAGENEGTMGEYGRNELNENGELLLTFA 490
BLAST of mRNA_H-elongata_contig161211.3912.1 vs. uniprot
Match: A0A6H5K7U5_9PHAE (Reverse transcriptase domain-containing protein n=9 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7U5_9PHAE) HSP 1 Score: 140 bits (353), Expect = 3.540e-35 Identity = 75/189 (39.68%), Postives = 115/189 (60.85%), Query Frame = 1
Query: 1 ITVAIHNVRTMAVDGKHGVERALDVFNVYDRLGYDVIGLQETRRSGHSVFNQAGYLGY-CSGECGGENG--LAIRTSITRTAR-PPEFISDRLLKVTLELRGRAKAITFFVAYAPIETQNVSNKHAFWTSLDRAVEEVPRHEHLFVLMDANARTGMREKGQVGSKDSKIIGAYGRDTLNDNGELLLSFA 555
+ VA +NVRT+AV+G +G RA V + + G +GLQE RR G + F +G+ + C + GG +G +A+ ++ ++++ E++ +RL+ + E+ G A+TF AYAP + +KH FW LD V P E+LFVLMDANA+TG G + ++ +G YGR+ LN+NGELLL+FA
Sbjct: 19 VRVATYNVRTLAVNGANGYGRADSVLHEAAKQGISFVGLQEVRRPGRTEFAASGFRVFTCGTDKGGTHGVGIAVEETLCKSSQYTTEYVDERLMAMRFEMMGHRGAVTFVAAYAPTDVATTESKHMFWEKLDSLVRRTPAKEYLFVLMDANAQTG----GGIAGENEGTMGEYGRNELNENGELLLTFA 203
BLAST of mRNA_H-elongata_contig161211.3912.1 vs. uniprot
Match: A0A6H5JLM6_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLM6_9PHAE) HSP 1 Score: 140 bits (353), Expect = 3.670e-35 Identity = 75/189 (39.68%), Postives = 115/189 (60.85%), Query Frame = 1
Query: 1 ITVAIHNVRTMAVDGKHGVERALDVFNVYDRLGYDVIGLQETRRSGHSVFNQAGYLGY-CSGECGGENG--LAIRTSITRTAR-PPEFISDRLLKVTLELRGRAKAITFFVAYAPIETQNVSNKHAFWTSLDRAVEEVPRHEHLFVLMDANARTGMREKGQVGSKDSKIIGAYGRDTLNDNGELLLSFA 555
+ VA +NVRT+AV+G +G RA V + + G +GLQE RR G + F +G+ + C + GG +G +A+ ++ ++++ E++ +RL+ + E+ G A+TF AYAP + +KH FW LD V P E+LFVLMDANA+TG G + ++ +G YGR+ LN+NGELLL+FA
Sbjct: 510 VRVATYNVRTLAVNGANGYGRADSVLHEAAKQGISFVGLQEVRRPGRTEFAASGFRVFTCGTDKGGTHGVGIAVEETLCKSSQYTTEYVDERLMAMRFEMMGHRGAVTFVAAYAPTDVATTESKHMFWEKLDSLVRRTPAKEYLFVLMDANAQTG----GGIAGENEGTMGEYGRNELNENGELLLTFA 694
BLAST of mRNA_H-elongata_contig161211.3912.1 vs. uniprot
Match: A0A6H5K3Q1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3Q1_9PHAE) HSP 1 Score: 138 bits (348), Expect = 7.220e-35 Identity = 88/199 (44.22%), Postives = 114/199 (57.29%), Query Frame = 1
Query: 19 NVRTMAVDGKHGV-ERALDVFNVYDRLGYDVIGLQETRRSGHSVFNQAGYLGYCSGECGGEN--------GLAIRT----SITRTARPPEFISDRLLKVTLELRGRAKAITFFVAYAPIETQ------NVSNKHAFWTSLDRAVEEVPRHEHLFVLMDANARTGMREKGQVGSKDSKIIGAYGRDTLNDNGELLLSFAN 558
NVRT+A G++ + + V + G DVIGLQETRR+G GY+ SG G G+AI+ S+ R E IS RL+KV L++ GR +TF V YAP ET +V+ K +FWT+LD A+ EV +HL VLMDANARTG R KG D+KI+GAYGRD +N+NGE LL A+
Sbjct: 181 NVRTLAYSGRNPIGHNVMTVMQICSATGCDVIGLQETRRAGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQI-GRTCGVTFLVGYAPTETVRTTEGCDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRKGCC---DAKIMGAYGRDIMNNNGERLLGLAS 375
BLAST of mRNA_H-elongata_contig161211.3912.1 vs. uniprot
Match: A0A6H5L660_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L660_9PHAE) HSP 1 Score: 132 bits (333), Expect = 4.770e-34 Identity = 85/199 (42.71%), Postives = 109/199 (54.77%), Query Frame = 1
Query: 19 NVRTMAVDGKHGV-ERALDVFNVYDRLGYDVIGLQETRRSGHSVFNQAGYLGYCSGECGGEN--------GLAIRT----SITRTARPPEFISDRLLKVTLELRGRAKAITFFVAYAPIETQ------NVSNKHAFWTSLDRAVEEVPRHEHLFVLMDANARTGMREKGQVGSKDSKIIGAYGRDTLNDNGELLLSFAN 558
NVRT+A G++ + + V + G DVIGLQETRR G GY+ SG G G+AI+ S+ R E I RL+KV L + GR ITF V YAP ET +++ K +FWT+LD + EV H+HL VLMDANARTG R G D+KI+G YGRD +N+NGE LL A+
Sbjct: 154 NVRTLAYSGRNPIGHNVMTVMQICSATGCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGIAIKETMWESVGEEGRKVECIGPRLMKVRLRI-GRTCGITFVVRYAPTETVRTTAGGDINAKDSFWTALDAVIREVHSHDHLVVLMDANARTGRRRDGCC---DAKIMGVYGRDIMNNNGERLLGLAS 348
BLAST of mRNA_H-elongata_contig161211.3912.1 vs. uniprot
Match: A0A6H5JMB4_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMB4_9PHAE) HSP 1 Score: 135 bits (341), Expect = 8.960e-34 Identity = 87/199 (43.72%), Postives = 113/199 (56.78%), Query Frame = 1
Query: 19 NVRTMAVDGKHGV-ERALDVFNVYDRLGYDVIGLQETRRSGHSVFNQAGYLGYCSGECGGEN--------GLAIRT----SITRTARPPEFISDRLLKVTLELRGRAKAITFFVAYAPIETQ------NVSNKHAFWTSLDRAVEEVPRHEHLFVLMDANARTGMREKGQVGSKDSKIIGAYGRDTLNDNGELLLSFAN 558
NVRT+A G++ + + V + G DVIGLQETRR+G GY+ SG G G+AI+ S+ R E IS RL+KV L++ GR +TF V YAP ET +V+ K +FWT+LD A+ EV +HL VLMDANARTG R G D+KI+GAYGRD +N+NGE LL A+
Sbjct: 92 NVRTLAYSGRNPIGHNVMTVMQICSATGCDVIGLQETRRAGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQI-GRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRDGCC---DAKIMGAYGRDIMNNNGERLLGLAS 286
BLAST of mRNA_H-elongata_contig161211.3912.1 vs. uniprot
Match: A0A6H5K9G5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9G5_9PHAE) HSP 1 Score: 135 bits (339), Expect = 1.740e-33 Identity = 72/189 (38.10%), Postives = 112/189 (59.26%), Query Frame = 1
Query: 1 ITVAIHNVRTMAVDGKHGVERALDVFNVYDRLGYDVIGLQETRRSGHSVFNQAGYLGY-CSGECGGENG--LAIRTSITRTAR-PPEFISDRLLKVTLELRGRAKAITFFVAYAPIETQNVSNKHAFWTSLDRAVEEVPRHEHLFVLMDANARTGMREKGQVGSKDSKIIGAYGRDTLNDNGELLLSFA 555
+ VA +NVRT+AV+G +G RA V + + +GLQE RR G + F +G+ + C + GG +G +A+ ++ + ++ E++ +RL+ + E+ G A+ F AYAP + +K FW LD V +P E+LFVLMDANA+TG G + ++ + +G YGR+ LNDNG LLL+FA
Sbjct: 44 VRVATYNVRTLAVNGANGYGRADKVLHEAAKQDISFVGLQEVRRPGRTEFTASGFRVFTCGTDKGGTHGVGIAVEEALCKASQYTTEYVDERLMAMRFEMTGHRGAVNFVAAYAPTDVATADSKRMFWEKLDSLVRRIPAKEYLFVLMDANAQTG----GGIAGENERTMGEYGRNELNDNGRLLLTFA 228
BLAST of mRNA_H-elongata_contig161211.3912.1 vs. uniprot
Match: A0A6H5KZE6_9PHAE (Endo/exonuclease/phosphatase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZE6_9PHAE) HSP 1 Score: 127 bits (319), Expect = 1.820e-32 Identity = 84/199 (42.21%), Postives = 110/199 (55.28%), Query Frame = 1
Query: 19 NVRTMAVDGKHGV-ERALDVFNVYDRLGYDVIGLQETRRSGHSVFNQAGYLGYCSGECGGEN--------GLAIRTSITRTA----RPPEFISDRLLKVTLELRGRAKAITFFVAYAPIETQ------NVSNKHAFWTSLDRAVEEVPRHEHLFVLMDANARTGMREKGQVGSKDSKIIGAYGRDTLNDNGELLLSFAN 558
NV T+A G++ + + V + G DVIGLQETRR G GY+ SG G G+AI+ +I + R E IS RL+KV L++ GR +TF V YAP ET +V+ K +FWT+LD A+ EV +HL VLM ANARTG R G D+KI+GA GRD +N+NGE LL A+
Sbjct: 15 NVHTLAYSGRNPIGHNVMTVMQICSATGCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRGGHGVGIAIKEAIWESVGEEGRTVECISPRLMKVRLQI-GRTCGVTFVVGYAPTETVRSTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMGANARTGRRRDGCC---DAKIMGANGRDIMNNNGERLLELAS 209 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig161211.3912.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig161211.3912.1 >prot_H-elongata_contig161211.3912.1 ID=prot_H-elongata_contig161211.3912.1|Name=mRNA_H-elongata_contig161211.3912.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=176bp MAVDGKHGVERALDVFNVYDRLGYDVIGLQETRRSGHSVFNQAGYLGYCSback to top mRNA from alignment at H-elongata_contig161211:23..607- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig161211.3912.1 ID=mRNA_H-elongata_contig161211.3912.1|Name=mRNA_H-elongata_contig161211.3912.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=585bp|location=Sequence derived from alignment at H-elongata_contig161211:23..607- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig161211:23..607- >mRNA_H-elongata_contig161211.3912.1 ID=mRNA_H-elongata_contig161211.3912.1|Name=mRNA_H-elongata_contig161211.3912.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1056bp|location=Sequence derived from alignment at H-elongata_contig161211:23..607- (Himanthalia elongata Himel1 dioecious)back to top |