prot_H-elongata_contig16117.3910.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig16117.3910.1
Unique Nameprot_H-elongata_contig16117.3910.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length53
Homology
BLAST of mRNA_H-elongata_contig16117.3910.1 vs. uniprot
Match: D7FUH5_ECTSI (Leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUH5_ECTSI)

HSP 1 Score: 55.1 bits (131), Expect = 1.580e-7
Identity = 27/52 (51.92%), Postives = 31/52 (59.62%), Query Frame = 0
Query:    1 MAQVDREGLRALFLAAKGHGWRKKQGWCTNAELREWFGVFVNADGRVEALIL 52
            MA  DR  L ALF A +G  WRK   W T+  L  W+GV VNA+GRV  L L
Sbjct:    1 MASTDRNALIALFQATRGAEWRKSDNWGTSEGLGTWYGVDVNAEGRVVKLSL 52          
BLAST of mRNA_H-elongata_contig16117.3910.1 vs. uniprot
Match: D7G3R3_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3R3_ECTSI)

HSP 1 Score: 52.4 bits (124), Expect = 1.770e-6
Identity = 25/52 (48.08%), Postives = 31/52 (59.62%), Query Frame = 0
Query:    1 MAQVDREGLRALFLAAKGHGWRKKQGWCTNAELREWFGVFVNADGRVEALIL 52
            MA  DR+ L  LF   +G  WR+K  W T+  L  W+GV VNA+GRV  L L
Sbjct:  282 MASADRDALITLFHETRGANWREKGNWGTSEVLGTWYGVDVNAEGRVVKLSL 333          
BLAST of mRNA_H-elongata_contig16117.3910.1 vs. uniprot
Match: D7FHA4_ECTSI (Hypothetical leucine rich repeat protein (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHA4_ECTSI)

HSP 1 Score: 51.2 bits (121), Expect = 3.040e-6
Identity = 24/53 (45.28%), Postives = 33/53 (62.26%), Query Frame = 0
Query:    1 MAQVDREGLRALFLAAKGHGWRKKQGWCTNAELREWFGVFVNADGRVEALILA 53
            M   DR  L ALF +  G  W+    W T+A+L +W+GV+VN DGRV+ L L+
Sbjct:    1 MPSEDRAALVALFRSTGGTLWKHNAYWDTDAKLSQWYGVYVNQDGRVKELRLS 53          
BLAST of mRNA_H-elongata_contig16117.3910.1 vs. uniprot
Match: A0A7X3WE75_9BACT (BIG2 domain-containing protein n=1 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A7X3WE75_9BACT)

HSP 1 Score: 51.2 bits (121), Expect = 4.590e-6
Identity = 21/48 (43.75%), Postives = 31/48 (64.58%), Query Frame = 0
Query:    5 DREGLRALFLAAKGHGWRKKQGWCTNAELREWFGVFVNADGRVEALIL 52
            DR  L AL+++  G  W++   W T+  L  W+GV VNA GRV++L+L
Sbjct:  282 DRSSLIALYISTDGGNWKQSANWLTDEPLSTWYGVGVNAAGRVDSLVL 329          
BLAST of mRNA_H-elongata_contig16117.3910.1 vs. uniprot
Match: D7G450_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G450_ECTSI)

HSP 1 Score: 50.1 bits (118), Expect = 1.160e-5
Identity = 24/51 (47.06%), Postives = 29/51 (56.86%), Query Frame = 0
Query:    2 AQVDREGLRALFLAAKGHGWRKKQGWCTNAELREWFGVFVNADGRVEALIL 52
            A+ DR  L  LF   KG  W     W T++ L EW+GV VNA+GRV  L L
Sbjct:  314 ARTDRTVLMELFNTTKGPSWTTSTAWGTSSSLGEWYGVTVNAEGRVTKLDL 364          
BLAST of mRNA_H-elongata_contig16117.3910.1 vs. uniprot
Match: A0A6H5KJG9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJG9_9PHAE)

HSP 1 Score: 48.5 bits (114), Expect = 1.400e-5
Identity = 22/50 (44.00%), Postives = 29/50 (58.00%), Query Frame = 0
Query:    3 QVDREGLRALFLAAKGHGWRKKQGWCTNAELREWFGVFVNADGRVEALIL 52
            + DR  L  LF   KG  W+    W +++ L EW+GV VNA+GRV  L L
Sbjct:   59 ETDRAALMELFNTTKGPSWKTSTAWGSSSFLGEWYGVTVNAEGRVTKLHL 108          
BLAST of mRNA_H-elongata_contig16117.3910.1 vs. uniprot
Match: A0A6B1AS51_9GAMM (Uncharacterized protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A6B1AS51_9GAMM)

HSP 1 Score: 48.5 bits (114), Expect = 4.110e-5
Identity = 25/52 (48.08%), Postives = 32/52 (61.54%), Query Frame = 0
Query:    2 AQVDREGLRALFLAAKGHGWRKKQGWCTNAELREWFGVFVNADGRVEALILA 53
            AQ DR  L AL+ A  G  W   + W T+A L EW+GV V+A+GRV  L L+
Sbjct:  480 AQDDRSVLVALYEATDGPNWVNNEKWLTDAPLGEWYGVEVDANGRVIRLELS 531          
BLAST of mRNA_H-elongata_contig16117.3910.1 vs. uniprot
Match: A0A7X4DLC2_9BACT (Uncharacterized protein n=1 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A7X4DLC2_9BACT)

HSP 1 Score: 48.5 bits (114), Expect = 4.120e-5
Identity = 22/48 (45.83%), Postives = 31/48 (64.58%), Query Frame = 0
Query:    5 DREGLRALFLAAKGHGWRKKQGWCTNAELREWFGVFVNADGRVEALIL 52
            DRE L+A++ A  G  W ++ GW T+A L++W GV  + DGRV  L L
Sbjct:  642 DREVLKAVYDATGGTQWWRRDGWLTDAPLKDWHGVKTDDDGRVVELAL 689          
BLAST of mRNA_H-elongata_contig16117.3910.1 vs. uniprot
Match: A0A482SYQ2_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SYQ2_9ARCH)

HSP 1 Score: 48.1 bits (113), Expect = 5.630e-5
Identity = 20/48 (41.67%), Postives = 29/48 (60.42%), Query Frame = 0
Query:    5 DREGLRALFLAAKGHGWRKKQGWCTNAELREWFGVFVNADGRVEALIL 52
            +R+ L  ++ A +G  W+    WC+ A +  WFGV VN +G V ALIL
Sbjct: 1010 ERDALVEIYRALRGQKWKNSANWCSAAPVSSWFGVSVNREGYVIALIL 1057          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig16117.3910.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
D7FUH5_ECTSI1.580e-751.92Leucine rich repeat protein n=1 Tax=Ectocarpus sil... [more]
D7G3R3_ECTSI1.770e-648.08Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
D7FHA4_ECTSI3.040e-645.28Hypothetical leucine rich repeat protein (Partial)... [more]
A0A7X3WE75_9BACT4.590e-643.75BIG2 domain-containing protein n=1 Tax=Gemmatimona... [more]
D7G450_ECTSI1.160e-547.06Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A6H5KJG9_9PHAE1.400e-544.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6B1AS51_9GAMM4.110e-548.08Uncharacterized protein n=1 Tax=Gammaproteobacteri... [more]
A0A7X4DLC2_9BACT4.120e-545.83Uncharacterized protein n=1 Tax=Gemmatimonadetes b... [more]
A0A482SYQ2_9ARCH5.630e-541.67Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 2..53
e-value: 1.4E-6
score: 28.8

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig16117contigH-elongata_contig16117:2206..2364 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig16117.3910.1mRNA_H-elongata_contig16117.3910.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig16117 2206..2655 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig16117.3910.1 ID=prot_H-elongata_contig16117.3910.1|Name=mRNA_H-elongata_contig16117.3910.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=53bp
MAQVDREGLRALFLAAKGHGWRKKQGWCTNAELREWFGVFVNADGRVEAL
ILA
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR032675LRR_dom_sf