mRNA_H-elongata_contig1611.3908.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig1611.3908.1
Unique NamemRNA_H-elongata_contig1611.3908.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig1611.3908.1 vs. uniprot
Match: D8LIE6_ECTSI (Conserved protein of fucose operon n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LIE6_ECTSI)

HSP 1 Score: 250 bits (638), Expect = 6.520e-83
Identity = 128/156 (82.05%), Postives = 139/156 (89.10%), Query Frame = 1
Query:    1 MGLIGISPIISPDLLATLARMGHGDSICFADANFPSEGL---GRP---VVRADGHEVAPLLRAVTKLFPLDTYTEYPVKMMAAVPGDELDPKIEERFRTAIDRVQPGMFKVERVERFEFYERAKACFAVVATGETAKYGNIILVKGVLGVGDGSAG 450
            MGLIGISP+ISPDLL TLARMGHGDSICFADANFPSE L   G+P    VRADGHEVAPLLRAV+KLFPLDTYTE+PV+MMAAVPGDELD  IEERF TA++  QPGMFKVERVERF FYERA++C+AVV+TGETAKYGNIILVKGVLGV D SAG
Sbjct:    1 MGLIGISPLISPDLLVTLARMGHGDSICFADANFPSENLTSPGKPGPITVRADGHEVAPLLRAVSKLFPLDTYTEFPVQMMAAVPGDELDASIEERFSTAVEAEQPGMFKVERVERFAFYERARSCYAVVSTGETAKYGNIILVKGVLGVSDESAG 156          
BLAST of mRNA_H-elongata_contig1611.3908.1 vs. uniprot
Match: A0A7X7AX45_9BACT (D-ribose pyranase n=1 Tax=Armatimonadetes bacterium TaxID=2033014 RepID=A0A7X7AX45_9BACT)

HSP 1 Score: 174 bits (442), Expect = 2.310e-53
Identity = 86/137 (62.77%), Postives = 103/137 (75.18%), Query Frame = 1
Query:   13 GISPIISPDLLATLARMGHGDSICFADANFPSEGLGRPVVRADGHEVAPLLRAVTKLFPLDTYTEYPVKMMAAVPGDELDPKIEERFRTAIDRVQPGMFKVERVERFEFYERAKACFAVVATGETAKYGNIILVKGV 423
            GISP++SP+LLA LARMGHGD I  ADA+FP E  G+ V+RADG  +A LL A+  LF LD+Y + PV MMAAVPGD LDP +E+ +R  IDR  P    + R+ERF FYERA+A FAVV TGETAKYGN+IL KGV
Sbjct:    4 GISPLLSPELLAVLARMGHGDEIVLADAHFPGETFGQRVLRADGLRIADLLDAILPLFELDSYVDAPVVMMAAVPGDTLDPAVEQAYRAVIDRHAPATPPIARIERFTFYERARAAFAVVMTGETAKYGNVILKKGV 140          
BLAST of mRNA_H-elongata_contig1611.3908.1 vs. uniprot
Match: A0A524J1J2_9CHLR (D-ribose pyranase n=1 Tax=Anaerolineales bacterium TaxID=2073117 RepID=A0A524J1J2_9CHLR)

HSP 1 Score: 174 bits (440), Expect = 4.650e-53
Identity = 87/143 (60.84%), Postives = 106/143 (74.13%), Query Frame = 1
Query:    7 LIGISPIISPDLLATLARMGHGDSICFADANFPSEGLGRPVVRADGHEVAPLLRAVTKLFPLDTYTEYPVKMMAAVPGDELDPKIEERFRTAIDRVQPGMFKVERVERFEFYERAKACFAVVATGETAKYGNIILVKGVLGVG 435
            L+GISP++SP+LLA L RMGHGD I  ADA+FP E     VVRADG +VA LL A+  LF LDTY + PV MM+ VPGD LDP++E R+RTA+D+V P    + ++ERFEFYER +  F VV TGETAKYGNIIL KGV  +G
Sbjct:    2 LLGISPLMSPELLAILYRMGHGDEIVLADAHFPGESCNDLVVRADGLKVADLLDAILPLFALDTYVDSPVMMMSPVPGDALDPEVEARYRTAVDKVWPETPAIAQIERFEFYERTRKAFCVVMTGETAKYGNIILKKGVTPIG 144          
BLAST of mRNA_H-elongata_contig1611.3908.1 vs. uniprot
Match: A0A7X7A4N1_9BACT (D-ribose pyranase n=2 Tax=Armatimonadetes bacterium TaxID=2033014 RepID=A0A7X7A4N1_9BACT)

HSP 1 Score: 173 bits (438), Expect = 9.080e-53
Identity = 86/137 (62.77%), Postives = 103/137 (75.18%), Query Frame = 1
Query:   13 GISPIISPDLLATLARMGHGDSICFADANFPSEGLGRPVVRADGHEVAPLLRAVTKLFPLDTYTEYPVKMMAAVPGDELDPKIEERFRTAIDRVQPGMFKVERVERFEFYERAKACFAVVATGETAKYGNIILVKGV 423
            GISP++SP+LL  L RMGHGD I  ADA+FP E +G+ VVRADG  +A LL A+  LF LD+Y + PV MMAAVPGD LDP +E  +R AIDR  PG   + R++RF FYERAKA +AVV TGETAKYGNI+L KGV
Sbjct:    4 GISPLLSPELLDALYRMGHGDEIVLADAHFPGETVGKRVVRADGLRIADLLDAILPLFELDSYVDAPVVMMAAVPGDTLDPAVEAAYRAAIDRHAPGTPAIARIDRFAFYERAKAAYAVVMTGETAKYGNILLKKGV 140          
BLAST of mRNA_H-elongata_contig1611.3908.1 vs. uniprot
Match: A0A3N5XLL6_9BACT (D-ribose pyranase n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A3N5XLL6_9BACT)

HSP 1 Score: 172 bits (437), Expect = 1.290e-52
Identity = 84/136 (61.76%), Postives = 102/136 (75.00%), Query Frame = 1
Query:   16 ISPIISPDLLATLARMGHGDSICFADANFPSEGLGRPVVRADGHEVAPLLRAVTKLFPLDTYTEYPVKMMAAVPGDELDPKIEERFRTAIDRVQPGMFKVERVERFEFYERAKACFAVVATGETAKYGNIILVKGV 423
            ISP++SPDLL+ L RMGHGD I  ADA+FP E  GR V+RADG  +APLL A+  LF LD+Y + PV MMAAVPGD+LDP +E  +R AIDR  P   ++ R++R  FYER K+ FAVV TGETAKYGNI+L KGV
Sbjct:    5 ISPLLSPDLLSVLCRMGHGDEIVLADAHFPGETYGRRVIRADGLRIAPLLDAILPLFELDSYVDSPVVMMAAVPGDQLDPAVEREYRAAIDRHAPQTPRIARIDRASFYERTKSVFAVVMTGETAKYGNILLKKGV 140          
BLAST of mRNA_H-elongata_contig1611.3908.1 vs. uniprot
Match: A0A3N5UZU9_9CHLR (D-ribose pyranase n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A3N5UZU9_9CHLR)

HSP 1 Score: 170 bits (431), Expect = 1.160e-51
Identity = 85/139 (61.15%), Postives = 104/139 (74.82%), Query Frame = 1
Query:    7 LIGISPIISPDLLATLARMGHGDSICFADANFPSEGLGRPVVRADGHEVAPLLRAVTKLFPLDTYTEYPVKMMAAVPGDELDPKIEERFRTAIDRVQPGMFKVERVERFEFYERAKACFAVVATGETAKYGNIILVKGV 423
            LIGISP+ISPDLLA L RMGHGD I  ADA+FP E  G+ V+RADG  +  LL A+  LF LD+Y E P+ MM AVPGD+LDP++E  +R AID+  P    ++R++RF+FYERAK  FAV+ TGET KYGNIIL KGV
Sbjct:    2 LIGISPLISPDLLAILHRMGHGDEIVLADAHFPGETYGKCVLRADGLRIPDLLDAILPLFILDSYVESPLIMMCAVPGDQLDPRVEASYRQAIDKHWPDTPPIQRIDRFDFYERAKQAFAVLMTGETVKYGNIILKKGV 140          
BLAST of mRNA_H-elongata_contig1611.3908.1 vs. uniprot
Match: A0A1V5G3T7_9BACT (D-ribose pyranase n=1 Tax=candidate division BRC1 bacterium ADurb.BinA364 TaxID=1852825 RepID=A0A1V5G3T7_9BACT)

HSP 1 Score: 169 bits (429), Expect = 2.120e-51
Identity = 86/139 (61.87%), Postives = 100/139 (71.94%), Query Frame = 1
Query:    7 LIGISPIISPDLLATLARMGHGDSICFADANFPSEGLGRPVVRADGHEVAPLLRAVTKLFPLDTYTEYPVKMMAAVPGDELDPKIEERFRTAIDRVQPGMFKVERVERFEFYERAKACFAVVATGETAKYGNIILVKGV 423
            LIGISP+I PDLLA L RMGHGD I  ADA+FP E L   V+RADG  +APLL  +  LF LD Y   PV MMAAV GD L P++E+ +R AI+R  P    +ER+ERF FYERAK  +AVV TGETAKYGNI+L KGV
Sbjct:    2 LIGISPLIGPDLLAVLCRMGHGDEIVLADAHFPGESLNSRVLRADGLRIAPLLDGILPLFALDEYVASPVVMMAAVEGDALAPEVEQAYRAAIERHAPRTPPIERIERFAFYERAKTAYAVVMTGETAKYGNILLKKGV 140          
BLAST of mRNA_H-elongata_contig1611.3908.1 vs. uniprot
Match: A0A651HIY1_9BACT (D-ribose pyranase n=1 Tax=Puniceicoccaceae bacterium TaxID=2026784 RepID=A0A651HIY1_9BACT)

HSP 1 Score: 169 bits (427), Expect = 4.400e-51
Identity = 84/141 (59.57%), Postives = 103/141 (73.05%), Query Frame = 1
Query:   13 GISPIISPDLLATLARMGHGDSICFADANFPSEGLGRPVVRADGHEVAPLLRAVTKLFPLDTYTEYPVKMMAAVPGDELDPKIEERFRTAIDRVQPGMFKVERVERFEFYERAKACFAVVATGETAKYGNIILVKGVLGVG 435
            GISP++SP+LLA L RMGHGD +  ADA+FP   + R V+RADG E+APLL A+  LF LD Y   P+ MMA V GD LDP++E R+R AI+R QPG   + R+ERF FYERA+  FAV+ TGETAKYGN+IL KGV   G
Sbjct:    4 GISPLLSPELLALLHRMGHGDELVLADAHFPGHSIHRTVLRADGLEIAPLLDAILPLFELDGYVPDPLAMMAPVEGDTLDPEVERRYRAAIERHQPGAPAILRLERFAFYERARGAFAVLMTGETAKYGNLILKKGVTPAG 144          
BLAST of mRNA_H-elongata_contig1611.3908.1 vs. uniprot
Match: A0A4U2LAJ6_9BACT (D-ribose pyranase n=1 Tax=Puteibacter caeruleilacunae TaxID=2528631 RepID=A0A4U2LAJ6_9BACT)

HSP 1 Score: 168 bits (426), Expect = 6.450e-51
Identity = 82/137 (59.85%), Postives = 104/137 (75.91%), Query Frame = 1
Query:   13 GISPIISPDLLATLARMGHGDSICFADANFPSEGLGRPVVRADGHEVAPLLRAVTKLFPLDTYTEYPVKMMAAVPGDELDPKIEERFRTAIDRVQPGMFKVERVERFEFYERAKACFAVVATGETAKYGNIILVKGV 423
            GISP+ISP LL TLARMGHGD I  ADA+FP+E     V+RADG ++  LL+A+  LF LD+Y E P+ MM AV GDELDP++E+++  A+++  P +  VER+ERF FY+RAK+ FAVV TGET KYGNIIL KGV
Sbjct:    4 GISPLISPKLLETLARMGHGDEIILADAHFPAESFNDNVLRADGIKIPDLLQAILPLFELDSYVENPLIMMQAVEGDELDPEVEKQYMKAVEQTNPQLTTVERIERFSFYDRAKSAFAVVMTGETVKYGNIILKKGV 140          
BLAST of mRNA_H-elongata_contig1611.3908.1 vs. uniprot
Match: A0A7X1B4G5_9BACT (D-ribose pyranase n=1 Tax=Pelagicoccus albus TaxID=415222 RepID=A0A7X1B4G5_9BACT)

HSP 1 Score: 168 bits (425), Expect = 8.870e-51
Identity = 83/139 (59.71%), Postives = 102/139 (73.38%), Query Frame = 1
Query:    7 LIGISPIISPDLLATLARMGHGDSICFADANFPSEGLGRPVVRADGHEVAPLLRAVTKLFPLDTYTEYPVKMMAAVPGDELDPKIEERFRTAIDRVQPGMFKVERVERFEFYERAKACFAVVATGETAKYGNIILVKGV 423
            LIGISP++SP+LL  L RMGHGD I  ADA+FP E     V+RADG ++A LL A++ LFP D Y E P+ MM+AVPGDELDP +EE +  +I +  P     ER+ERF FYERA++ +AVV TGETAKYGNIIL KGV
Sbjct:    2 LIGISPLLSPELLNALYRMGHGDEIVLADAHFPGESFNGNVIRADGLKIADLLGAISPLFPFDEYVENPLGMMSAVPGDELDPSVEEGYLASIRKTYPDTKPSERIERFAFYERARSAYAVVMTGETAKYGNIILKKGV 140          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig1611.3908.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LIE6_ECTSI6.520e-8382.05Conserved protein of fucose operon n=2 Tax=Ectocar... [more]
A0A7X7AX45_9BACT2.310e-5362.77D-ribose pyranase n=1 Tax=Armatimonadetes bacteriu... [more]
A0A524J1J2_9CHLR4.650e-5360.84D-ribose pyranase n=1 Tax=Anaerolineales bacterium... [more]
A0A7X7A4N1_9BACT9.080e-5362.77D-ribose pyranase n=2 Tax=Armatimonadetes bacteriu... [more]
A0A3N5XLL6_9BACT1.290e-5261.76D-ribose pyranase n=1 Tax=Acidobacteria bacterium ... [more]
A0A3N5UZU9_9CHLR1.160e-5161.15D-ribose pyranase n=1 Tax=Chloroflexi bacterium Ta... [more]
A0A1V5G3T7_9BACT2.120e-5161.87D-ribose pyranase n=1 Tax=candidate division BRC1 ... [more]
A0A651HIY1_9BACT4.400e-5159.57D-ribose pyranase n=1 Tax=Puniceicoccaceae bacteri... [more]
A0A4U2LAJ6_9BACT6.450e-5159.85D-ribose pyranase n=1 Tax=Puteibacter caeruleilacu... [more]
A0A7X1B4G5_9BACT8.870e-5159.71D-ribose pyranase n=1 Tax=Pelagicoccus albus TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig1611contigH-elongata_contig1611:14275..14751 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score250.8
Seed ortholog evalue4.4e-64
Seed eggNOG ortholog2880.D8LIE6
Preferred nameFUOM
KEGG rclassRC00563
KEGG koko:K02431
KEGG ReactionR10764
GOsGO:0000003,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005996,GO:0006004,GO:0007275,GO:0007399,GO:0007610,GO:0007617,GO:0007618,GO:0008150,GO:0008152,GO:0009987,GO:0010721,GO:0016853,GO:0016854,GO:0016857,GO:0019098,GO:0019318,GO:0019953,GO:0022008,GO:0022414,GO:0030154,GO:0030246,GO:0032501,GO:0032502,GO:0032504,GO:0036065,GO:0036094,GO:0042806,GO:0044238,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0044703,GO:0045595,GO:0045596,GO:0045664,GO:0045665,GO:0048029,GO:0048519,GO:0048523,GO:0048609,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050767,GO:0050768,GO:0050789,GO:0050793,GO:0050794,GO:0051093,GO:0051239,GO:0051241,GO:0051704,GO:0051960,GO:0051961,GO:0060180,GO:0060284,GO:0065007,GO:0070085,GO:0071704,GO:2000026
EggNOG free text desc.Fucose mutarotase
EggNOG OGs2RZR7@2759,COG4154@1
EC5.1.3.29
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionD-ribose pyranase RbsD/L-fucose mutarotase FucU
Ec32 orthologEc-18_003960.1
Exons1
Model size477
Cds size477
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929944.88157-CDS-H-elongata_contig1611:14274..147511622929944.88157-CDS-H-elongata_contig1611:14274..14751Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1611 14275..14751 -
1691679218.1669152-CDS-H-elongata_contig1611:14274..147511691679218.1669152-CDS-H-elongata_contig1611:14274..14751Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1611 14275..14751 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig1611.3908.1prot_H-elongata_contig1611.3908.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig1611 14275..14751 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig1611.3908.1

>prot_H-elongata_contig1611.3908.1 ID=prot_H-elongata_contig1611.3908.1|Name=mRNA_H-elongata_contig1611.3908.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=159bp
MGLIGISPIISPDLLATLARMGHGDSICFADANFPSEGLGRPVVRADGHE
VAPLLRAVTKLFPLDTYTEYPVKMMAAVPGDELDPKIEERFRTAIDRVQP
GMFKVERVERFEFYERAKACFAVVATGETAKYGNIILVKGVLGVGDGSAG
DTTFQLPS*
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mRNA from alignment at H-elongata_contig1611:14275..14751-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig1611.3908.1 ID=mRNA_H-elongata_contig1611.3908.1|Name=mRNA_H-elongata_contig1611.3908.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=477bp|location=Sequence derived from alignment at H-elongata_contig1611:14275..14751- (Himanthalia elongata Himel1 dioecious)
ATGGGGCTTATCGGCATATCACCGATCATATCGCCAGACCTCTTGGCCAC CCTTGCCCGCATGGGTCACGGTGACTCTATCTGCTTTGCGGATGCCAACT TCCCGTCCGAAGGCCTAGGCCGTCCCGTAGTCCGAGCGGACGGACACGAG GTCGCCCCGCTGCTGCGGGCAGTTACGAAGCTCTTTCCACTCGACACTTA CACCGAATATCCTGTCAAAATGATGGCTGCGGTTCCGGGGGACGAGTTAG ACCCCAAGATCGAGGAGCGGTTCCGAACCGCAATCGACCGAGTCCAACCG GGAATGTTCAAGGTGGAGCGCGTCGAACGGTTCGAGTTCTACGAGCGCGC TAAGGCTTGTTTTGCCGTGGTCGCGACGGGCGAGACCGCTAAGTACGGGA ACATTATACTAGTCAAGGGAGTCTTGGGGGTTGGCGACGGGTCGGCTGGA GATACGACTTTCCAATTGCCTTCTTGA
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Coding sequence (CDS) from alignment at H-elongata_contig1611:14275..14751-

>mRNA_H-elongata_contig1611.3908.1 ID=mRNA_H-elongata_contig1611.3908.1|Name=mRNA_H-elongata_contig1611.3908.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=954bp|location=Sequence derived from alignment at H-elongata_contig1611:14275..14751- (Himanthalia elongata Himel1 dioecious)
ATGGGGCTTATCGGCATATCACCGATCATATCGCCAGACCTCTTGGCCAC
CCTTGCCCGCATGGGTCACGGTGACTCTATCTGCTTTGCGGATGCCAACT
TCCCGTCCGAAGGCCTAGGCCGTCCCGTAGTCCGAGCGGACGGACACGAG
GTCGCCCCGCTGCTGCGGGCAGTTACGAAGCTCTTTCCACTCGACACTTA
CACCGAATATCCTGTCAAAATGATGGCTGCGGTTCCGGGGGACGAGTTAG
ACCCCAAGATCGAGGAGCGGTTCCGAACCGCAATCGACCGAGTCCAACCG
GGAATGTTCAAGGTGGAGCGCGTCGAACGGTTCGAGTTCTACGAGCGCGC
TAAGGCTTGTTTTGCCGTGGTCGCGACGGGCGAGACCGCTAAGTACGGGA
ACATTATACTAGTCAAGGGAGTCTTGGGGGTTGGCGACGGGTCGGCTGGA
GATACGACTTTCCAATTGCCTTCTTGAATGGGGCTTATCGGCATATCACC
GATCATATCGCCAGACCTCTTGGCCACCCTTGCCCGCATGGGTCACGGTG
ACTCTATCTGCTTTGCGGATGCCAACTTCCCGTCCGAAGGCCTAGGCCGT
CCCGTAGTCCGAGCGGACGGACACGAGGTCGCCCCGCTGCTGCGGGCAGT
TACGAAGCTCTTTCCACTCGACACTTACACCGAATATCCTGTCAAAATGA
TGGCTGCGGTTCCGGGGGACGAGTTAGACCCCAAGATCGAGGAGCGGTTC
CGAACCGCAATCGACCGAGTCCAACCGGGAATGTTCAAGGTGGAGCGCGT
CGAACGGTTCGAGTTCTACGAGCGCGCTAAGGCTTGTTTTGCCGTGGTCG
CGACGGGCGAGACCGCTAAGTACGGGAACATTATACTAGTCAAGGGAGTC
TTGGGGGTTGGCGACGGGTCGGCTGGAGATACGACTTTCCAATTGCCTTC
TTGA
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