mRNA_H-elongata_contig161017.3904.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig161017.3904.1
Unique NamemRNA_H-elongata_contig161017.3904.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig161017.3904.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig161017contigH-elongata_contig161017:752..1297 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size296
Cds size240
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig161017.3904.1prot_H-elongata_contig161017.3904.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig161017 752..1243 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929944.5582564-CDS-H-elongata_contig161017:751..8231622929944.5582564-CDS-H-elongata_contig161017:751..823Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig161017 752..823 -
1691679218.0033045-CDS-H-elongata_contig161017:751..8231691679218.0033045-CDS-H-elongata_contig161017:751..823Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig161017 752..823 -
1622929944.5747087-CDS-H-elongata_contig161017:1075..12431622929944.5747087-CDS-H-elongata_contig161017:1075..1243Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig161017 1076..1243 -
1691679218.0218122-CDS-H-elongata_contig161017:1075..12431691679218.0218122-CDS-H-elongata_contig161017:1075..1243Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig161017 1076..1243 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929944.590028-UTR-H-elongata_contig161017:1243..12971622929944.590028-UTR-H-elongata_contig161017:1243..1297Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig161017 1244..1297 -
1691679218.0408735-UTR-H-elongata_contig161017:1243..12971691679218.0408735-UTR-H-elongata_contig161017:1243..1297Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig161017 1244..1297 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig161017.3904.1

>prot_H-elongata_contig161017.3904.1 ID=prot_H-elongata_contig161017.3904.1|Name=mRNA_H-elongata_contig161017.3904.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=80bp
MKTMRMVEAAKPVTYDALMQKDMECWTHHAGPQDTVIGDQTTSNPVEANM
NMVGKTARMLPPFGLAMSILGNNARRMSVK
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mRNA from alignment at H-elongata_contig161017:752..1297-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig161017.3904.1 ID=mRNA_H-elongata_contig161017.3904.1|Name=mRNA_H-elongata_contig161017.3904.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=546bp|location=Sequence derived from alignment at H-elongata_contig161017:752..1297- (Himanthalia elongata Himel1 dioecious)
GAAGTTAACGGGTGAATATATCAGGCCGCGAGGGGGCCTACCTTGACGCA
TTTTATGAAAACGATGAGGATGGTAGAGGCCGCGAAGCCGGTCACCTACG
ACGCGCTAATGCAGAAGGACATGGAGTGTTGGACTCATCACGCCGGACCG
CAGGACACCGTCATCGGTGACCAAACGACATCGAACCCGGTAGAGGCCAA
CATGAACATGGTCGGAAAAACAGTAGTGTTATTTTCGCGTTTCGTCTTGG
GGGAGCGTCGGCGATGTTGTATTCGTTGTGGTTCACAAACGAGGAACAGT
CACCATTTGTTCGCTCGAAAAGTGGTGTCGTTATAAATCGATTACGCAAA
GATAGGCCATCGAACGCACCGGTGTCGAGAAAAAGCTCCTCTTAAAACAT
ATTTTTCCTTGTGGCCATTTTCCTGCACATTTCACAAACCGGCAACCCGA
TTGTCCCTTCTTTTTTTATCACAGGCGAGGATGTTGCCGCCCTTTGGGCT
GGCGATGTCCATCCTCGGCAATAACGCCCGAAGGATGTCAGTGAAG
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Coding sequence (CDS) from alignment at H-elongata_contig161017:752..1297-

>mRNA_H-elongata_contig161017.3904.1 ID=mRNA_H-elongata_contig161017.3904.1|Name=mRNA_H-elongata_contig161017.3904.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=480bp|location=Sequence derived from alignment at H-elongata_contig161017:752..1297- (Himanthalia elongata Himel1 dioecious)
ATGAAAACGATGAGGATGGTAGAGGCCGCGAAGCCGGTCACCTACGACGC
GCTAATGCAGAAGGACATGGAGTGTTGGACTCATCACGCCGGACCGCAGG
ACACCGTCATCGGTGACCAAACGACATCGAACCCGGTAGAGGCCAACATG
AACATGGTCGGAAAAACAATGAAAACGATGAGGATGGTAGAGGCCGCGAA
GCCGGTCACCTACGACGCGCTAATGCAGAAGGACATGGAGTGTTGGACTC
ATCACGCCGGACCGCAGGACACCGTCATCGGTGACCAAACGACATCGAAC
CCGGTAGAGGCCAACATGAACATGGTCGGAAAAACAGCGAGGATGTTGCC
GCCCTTTGGGCTGGCGATGTCCATCCTCGGCAATAACGCCCGAAGGATGT
CAGTGAAGGCGAGGATGTTGCCGCCCTTTGGGCTGGCGATGTCCATCCTC
GGCAATAACGCCCGAAGGATGTCAGTGAAG
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