prot_H-elongata_contig161002.3903.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig161002.3903.1
Unique Nameprot_H-elongata_contig161002.3903.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length139
Homology
BLAST of mRNA_H-elongata_contig161002.3903.1 vs. uniprot
Match: A0A1Y1IK20_KLENI (DUF659 domain-containing protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IK20_KLENI)

HSP 1 Score: 77.0 bits (188), Expect = 9.470e-14
Identity = 49/142 (34.51%), Postives = 73/142 (51.41%), Query Frame = 0
Query:    6 CAAHAVDLLLKDLGNLDFFADTLKRINKVVKFVKNHHSTSAFYESHTNLRLITPCATRFATNVIVTMRILKTGVSTDYIRTATV--------ASVRAAGREVVSEISAGDALVGEFWFEVNVFVQLMEPLYALLRMGDGVLP 139
            C AH +DL L+D+G  ++ + TLK    +VKF+ NHH T A +  H++L L+ P  TRFAT+ I   R+L+     D +R ATV        A+ +A     ++E          FW E +   QL  P+  +LR+ D   P
Sbjct:  292 CVAHGMDLALEDVGKEEWVSPTLKAARDLVKFITNHHKTIALFRQHSDLELLKPGDTRFATSFITLERLLEVK---DSLR-ATVGHPDWTSWAAAQAPATRALAEDIQELVFTAAFWKEASEIAQLSIPIVKVLRLADCPAP 429          
BLAST of mRNA_H-elongata_contig161002.3903.1 vs. uniprot
Match: A0A388L9Q9_CHABU (DUF659 domain-containing protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388L9Q9_CHABU)

HSP 1 Score: 74.3 bits (181), Expect = 8.960e-13
Identity = 49/145 (33.79%), Postives = 75/145 (51.72%), Query Frame = 0
Query:    4 IKCAAHAVDLLLKDLGNLDFFADTLKRINKVVKFVKNHHSTSAFYES-HTNLRLITPCATRFATNVIVTMRIL-KTGVSTDYIRTATVASVRAAGREVVSEISAGDALV-----GEFWFEVNVFVQLMEPLYALLR--MGDGVLP 139
            + CAAH   LLL+D+  LD+   T+KR + +VKF++NHH+T++F  S  ++L L+ P   RF +   +  RI  +  V  D +    V   +A  R         D +        +W E+   V++MEPLY LLR  + DG  P
Sbjct:  323 VPCAAHCCSLLLRDISKLDWVKGTVKRGHTIVKFIRNHHTTNSFMMSLDSSLTLLRPTEVRFGSMYRMLERIHNRRAVFKDMVDVTNVGKWKAMRRSSAKPQEKADLVYFTLRRDAWWMELRKVVEMMEPLYLLLRRMVKDGTAP 467          
BLAST of mRNA_H-elongata_contig161002.3903.1 vs. uniprot
Match: A0A843V1P5_COLES (BED-type domain-containing protein n=1 Tax=Colocasia esculenta TaxID=4460 RepID=A0A843V1P5_COLES)

HSP 1 Score: 70.9 bits (172), Expect = 1.450e-11
Identity = 49/137 (35.77%), Postives = 70/137 (51.09%), Query Frame = 0
Query:    6 CAAHAVDLLLKDLGNLDFFADTLKRINKVVKFVKNHHSTSAFYESHTNLRLITPCATRFATNVIVTMRILK--TGVS----TDYIRTATVASVRAAGREVVSEISAGDALVGEFWFEVNVFVQLMEPLYALLRMGDG 136
            CAAH VDL+LK++G L      ++   K+ +++ NHH   A+    T   L+ P  TRFATN I    +LK   G+     TD    +T A   A G++V      G      FW  V   VQ+++PLY +LR+ DG
Sbjct:  369 CAAHCVDLMLKEIGTLRPVKTVVEAGQKITRYIYNHHVVLAWMRESTGGELLRPAITRFATNFIALQSLLKHKDGLKRMFRTDRWMQSTFAGT-ADGKDV-----EGIVCNANFWDRVFKLVQIIKPLYEVLRVVDG 499          
BLAST of mRNA_H-elongata_contig161002.3903.1 vs. uniprot
Match: A0A388LZB2_CHABU (DUF659 domain-containing protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388LZB2_CHABU)

HSP 1 Score: 70.1 bits (170), Expect = 2.600e-11
Identity = 49/140 (35.00%), Postives = 76/140 (54.29%), Query Frame = 0
Query:    4 IKCAAHAVDLLLKDLGNLDFFADTLKRINKVVKFVKNHHSTSAFYES-HTNLRLITPCATRFATNVIVTMRIL-KTGVSTDYIRTATVASVRAAGREVVSEISAGDALV------GEFWFEVNVFVQLMEPLYALLRMGD 135
            + CAAH   LLL+D+  LD+   T+KR + +VKF++NHH+T++F  S  ++L L+ P   RF +   +  RI  +  V  D +    V   +A  R   +++ A   LV        +W E+   V++MEPLY LLR  D
Sbjct:  404 VPCAAHCCSLLLRDISKLDWVKGTVKRGHTIVKFIRNHHTTNSFMMSLDSSLTLLRPTEVRFGSVYRMLERIHNRRAVLKDVVDATNVGKWKAM-RWSSAKLQAKADLVYFTLRRDAWWTELRKVVEMMEPLYLLLRRMD 542          
BLAST of mRNA_H-elongata_contig161002.3903.1 vs. uniprot
Match: A0A388LAH1_CHABU (RNA-directed DNA polymerase n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388LAH1_CHABU)

HSP 1 Score: 70.1 bits (170), Expect = 2.830e-11
Identity = 49/140 (35.00%), Postives = 77/140 (55.00%), Query Frame = 0
Query:    4 IKCAAHAVDLLLKDLGNLDFFADTLKRINKVVKFVKNHHSTSAFYES-HTNLRLITPCATRFATNVIVTMRIL-KTGVSTDYIRTATVASVRAAGREVVSEISAGDALV------GEFWFEVNVFVQLMEPLYALLRMGD 135
            + CAAH   LLL+D+  LD+   T+KR + +VKF++NHH+T++F  S  ++L L+ P   RF +   +  RI  +  V  D + +  V   +A  R   +++ A   LV        +W E+   V++MEPLY LLR  D
Sbjct:  111 VPCAAHCCSLLLRDISKLDWVKGTVKRGHTIVKFIRNHHTTNSFMMSLDSSLTLLQPTEVRFGSVYRMLERIHNRRAVLKDMVDSMNVGKWKAM-RWSSAKLQAKADLVYFTLQRDAWWTELRKVVEMMEPLYLLLRRMD 249          
BLAST of mRNA_H-elongata_contig161002.3903.1 vs. uniprot
Match: A0A843TB08_COLES (Uncharacterized protein n=1 Tax=Colocasia esculenta TaxID=4460 RepID=A0A843TB08_COLES)

HSP 1 Score: 69.7 bits (169), Expect = 3.640e-11
Identity = 46/136 (33.82%), Postives = 71/136 (52.21%), Query Frame = 0
Query:    6 CAAHAVDLLLKDLGNLDFFADTLKRINKVVKFVKNHHSTSAFYESHTNLRLITPCATRFATNVIVTMRILK--TGVSTDYIRTATVASVRAA---GREVVSEISAGDALVGEFWFEVNVFVQLMEPLYALLRMGDG 136
            CAAH VDL+LK++G L      +    K+ +F+ NHH   A+    T   L+ P  T FATN +    +LK   G+   +     + S  A+   G+EV S +++ +     FW  V   +Q++EPLY +LR+ DG
Sbjct:   88 CAAHCVDLMLKEIGTLQPVKMVVDAGQKITRFIYNHHLVLAWMRESTGGELLRPAVTCFATNFVALQSLLKHKDGLKRMFRGDKWLQSNFASTSDGKEVESIVNSSN-----FWDRVFKLIQIIEPLYEVLRVVDG 218          
BLAST of mRNA_H-elongata_contig161002.3903.1 vs. uniprot
Match: A0A843VI85_COLES (BED-type domain-containing protein n=1 Tax=Colocasia esculenta TaxID=4460 RepID=A0A843VI85_COLES)

HSP 1 Score: 69.7 bits (169), Expect = 3.720e-11
Identity = 45/143 (31.47%), Postives = 70/143 (48.95%), Query Frame = 0
Query:    6 CAAHAVDLLLKDLGNLDFFADTLKRINKVVKFVKNHHSTSAFYESHTNLRLITPCATRFATNVIVTMRILK------------TGVSTDYIRTATVASVRAAGREVVSEISAGDALVGEFWFEVNVFVQLMEPLYALLRMGDG 136
            CAAH VDL+LK++G L      +    K+ +F+ NHH   A+    T   L+ P  TRFATN +    +LK              + +++  T+        G+EV   +++ +     FW  V   VQ++EPLY +LR+ DG
Sbjct:  445 CAAHCVDLMLKEIGTLQPVKMVVDAGQKITRFIYNHHLVLAWMRESTGGELLRPGVTRFATNFVALQSLLKHKDGLKRMFRGDKWLQSNFANTSD-------GKEVEGIVNSSN-----FWDRVFKLVQIIEPLYEVLRVVDG 575          
BLAST of mRNA_H-elongata_contig161002.3903.1 vs. uniprot
Match: A0A843TN79_COLES (Uncharacterized protein n=1 Tax=Colocasia esculenta TaxID=4460 RepID=A0A843TN79_COLES)

HSP 1 Score: 69.3 bits (168), Expect = 5.060e-11
Identity = 47/136 (34.56%), Postives = 70/136 (51.47%), Query Frame = 0
Query:    6 CAAHAVDLLLKDLGNLDFFADTLKRINKVVKFVKNHHSTSAFYESHTNLRLITPCATRFATNVIVTMRILK--TGVSTDYIRTATVASVRAA---GREVVSEISAGDALVGEFWFEVNVFVQLMEPLYALLRMGDG 136
            CAAH VDL+LK++G L      +    K+  F+ NHH   A+    T   L+ P  TRFATN +    +LK   G+   +     + S  A+   G+EV   +++ +     FW  V   VQ++EPLY +LR+ DG
Sbjct:  325 CAAHCVDLMLKEIGTLQPVKMVVDAGQKITHFIYNHHLVLAWMRESTGGELLRPGVTRFATNFVALQSLLKHKDGLKRMFRGDKWLQSNFASTSDGKEVEGIVNSSN-----FWDRVFKLVQIIEPLYEVLRVVDG 455          
BLAST of mRNA_H-elongata_contig161002.3903.1 vs. uniprot
Match: A0A388JUG5_CHABU (Uncharacterized protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388JUG5_CHABU)

HSP 1 Score: 69.3 bits (168), Expect = 5.150e-11
Identity = 46/139 (33.09%), Postives = 72/139 (51.80%), Query Frame = 0
Query:    4 IKCAAHAVDLLLKDLGNLDFFADTLKRINKVVKFVKNHHSTSAFYES-HTNLRLITPCATRFATNVIVTMRIL-KTGVSTDYIRTATVASVRAAGREVVSEISAGDALV-----GEFWFEVNVFVQLMEPLYALLRMGD 135
            + CAAH   LLL+D+  LD+   T+KR + +VKF++NHHST++   S + +L L+ P   RF +  ++  R+L +  V +D +     A             S  D +        +W E+   V +MEPLY+LLR  D
Sbjct:  582 VPCAAHCCSLLLQDISKLDWVKRTVKRGHTIVKFIRNHHSTNSLMMSMNDSLTLLRPMEVRFGSVYMMLERLLNRKAVLSDMVDRKNAARWTGIRWSTAKLKSKADLVYFTMRRDGWWMELKKVVDVMEPLYSLLRRMD 720          
BLAST of mRNA_H-elongata_contig161002.3903.1 vs. uniprot
Match: A0A388LVF2_CHABU (Integrase catalytic domain-containing protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388LVF2_CHABU)

HSP 1 Score: 68.9 bits (167), Expect = 7.070e-11
Identity = 46/139 (33.09%), Postives = 71/139 (51.08%), Query Frame = 0
Query:    4 IKCAAHAVDLLLKDLGNLDFFADTLKRINKVVKFVKNHHSTSAFYES-HTNLRLITPCATRFATNVIVTMRIL-KTGVSTDYIRTATVASVRAAGREVVSEISAGDALV-----GEFWFEVNVFVQLMEPLYALLRMGD 135
            + CAAH   LLL+D+  LD+   T+KR + +VKF++NHHST++   S   +L L+ P   RF +  ++  R+L +  V +D +     A             S  D +        +W E+   V +MEPLY+LLR  D
Sbjct:  994 VPCAAHCCSLLLRDISKLDWVKSTVKRGHTIVKFIRNHHSTNSLMMSMDDSLTLLCPTKVRFGSVYMMLERLLNRKAVLSDMVDRKNAARWTGIRWSTTKLKSKADLVYFTMRRDGWWTELKKVVDVMEPLYSLLRRMD 1132          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig161002.3903.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1Y1IK20_KLENI9.470e-1434.51DUF659 domain-containing protein n=1 Tax=Klebsormi... [more]
A0A388L9Q9_CHABU8.960e-1333.79DUF659 domain-containing protein n=1 Tax=Chara bra... [more]
A0A843V1P5_COLES1.450e-1135.77BED-type domain-containing protein n=1 Tax=Colocas... [more]
A0A388LZB2_CHABU2.600e-1135.00DUF659 domain-containing protein n=1 Tax=Chara bra... [more]
A0A388LAH1_CHABU2.830e-1135.00RNA-directed DNA polymerase n=1 Tax=Chara braunii ... [more]
A0A843TB08_COLES3.640e-1133.82Uncharacterized protein n=1 Tax=Colocasia esculent... [more]
A0A843VI85_COLES3.720e-1131.47BED-type domain-containing protein n=1 Tax=Colocas... [more]
A0A843TN79_COLES5.060e-1134.56Uncharacterized protein n=1 Tax=Colocasia esculent... [more]
A0A388JUG5_CHABU5.150e-1133.09Uncharacterized protein n=1 Tax=Chara braunii TaxI... [more]
A0A388LVF2_CHABU7.070e-1133.09Integrase catalytic domain-containing protein n=1 ... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR32166FAMILY NOT NAMEDcoord: 4..133
NoneNo IPR availablePANTHERPTHR32166:SF24coord: 4..133
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 3..132

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig161002contigH-elongata_contig161002:326..973 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig161002.3903.1mRNA_H-elongata_contig161002.3903.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig161002 323..973 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig161002.3903.1 ID=prot_H-elongata_contig161002.3903.1|Name=mRNA_H-elongata_contig161002.3903.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=139bp
MSRIKCAAHAVDLLLKDLGNLDFFADTLKRINKVVKFVKNHHSTSAFYES
HTNLRLITPCATRFATNVIVTMRILKTGVSTDYIRTATVASVRAAGREVV
SEISAGDALVGEFWFEVNVFVQLMEPLYALLRMGDGVLP
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR012337RNaseH-like_sf