mRNA_H-elongata_contig161002.3903.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig161002.3903.1 vs. uniprot
Match: A0A1Y1IK20_KLENI (DUF659 domain-containing protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IK20_KLENI) HSP 1 Score: 76.6 bits (187), Expect = 1.330e-13 Identity = 49/142 (34.51%), Postives = 73/142 (51.41%), Query Frame = 1
Query: 19 CAAHAVDLLLKDLGNLDFFADTLKRINKVVKFVKNHHSTSAFYESHTNLRLITPCATRFATNVIVTMRILKTGVSTDYIRTATV--------ASVRAAGREVVSEISAGDALVGEFWFEVNVFVQLMEPLYALLRMGDGVLP 420
C AH +DL L+D+G ++ + TLK +VKF+ NHH T A + H++L L+ P TRFAT+ I R+L+ D +R ATV A+ +A ++E FW E + QL P+ +LR+ D P
Sbjct: 292 CVAHGMDLALEDVGKEEWVSPTLKAARDLVKFITNHHKTIALFRQHSDLELLKPGDTRFATSFITLERLLEVK---DSLR-ATVGHPDWTSWAAAQAPATRALAEDIQELVFTAAFWKEASEIAQLSIPIVKVLRLADCPAP 429
BLAST of mRNA_H-elongata_contig161002.3903.1 vs. uniprot
Match: A0A388L9Q9_CHABU (DUF659 domain-containing protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388L9Q9_CHABU) HSP 1 Score: 74.7 bits (182), Expect = 6.790e-13 Identity = 50/149 (33.56%), Postives = 77/149 (51.68%), Query Frame = 1
Query: 1 RMSRIKCAAHAVDLLLKDLGNLDFFADTLKRINKVVKFVKNHHSTSAFYES-HTNLRLITPCATRFATNVIVTMRIL-KTGVSTDYIRTATVASVRAAGREVVSEISAGDALV-----GEFWFEVNVFVQLMEPLYALLR--MGDGVLP 420
R+ + CAAH LLL+D+ LD+ T+KR + +VKF++NHH+T++F S ++L L+ P RF + + RI + V D + V +A R D + +W E+ V++MEPLY LLR + DG P
Sbjct: 319 RIPWVPCAAHCCSLLLRDISKLDWVKGTVKRGHTIVKFIRNHHTTNSFMMSLDSSLTLLRPTEVRFGSMYRMLERIHNRRAVFKDMVDVTNVGKWKAMRRSSAKPQEKADLVYFTLRRDAWWMELRKVVEMMEPLYLLLRRMVKDGTAP 467
BLAST of mRNA_H-elongata_contig161002.3903.1 vs. uniprot
Match: A0A388LZB2_CHABU (DUF659 domain-containing protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388LZB2_CHABU) HSP 1 Score: 70.5 bits (171), Expect = 1.970e-11 Identity = 50/144 (34.72%), Postives = 78/144 (54.17%), Query Frame = 1
Query: 1 RMSRIKCAAHAVDLLLKDLGNLDFFADTLKRINKVVKFVKNHHSTSAFYES-HTNLRLITPCATRFATNVIVTMRIL-KTGVSTDYIRTATVASVRAAGREVVSEISAGDALV------GEFWFEVNVFVQLMEPLYALLRMGD 408
R+ + CAAH LLL+D+ LD+ T+KR + +VKF++NHH+T++F S ++L L+ P RF + + RI + V D + V +A R +++ A LV +W E+ V++MEPLY LLR D
Sbjct: 400 RIPWVPCAAHCCSLLLRDISKLDWVKGTVKRGHTIVKFIRNHHTTNSFMMSLDSSLTLLRPTEVRFGSVYRMLERIHNRRAVLKDVVDATNVGKWKAM-RWSSAKLQAKADLVYFTLRRDAWWTELRKVVEMMEPLYLLLRRMD 542
BLAST of mRNA_H-elongata_contig161002.3903.1 vs. uniprot
Match: A0A843V1P5_COLES (BED-type domain-containing protein n=1 Tax=Colocasia esculenta TaxID=4460 RepID=A0A843V1P5_COLES) HSP 1 Score: 70.5 bits (171), Expect = 2.050e-11 Identity = 49/137 (35.77%), Postives = 70/137 (51.09%), Query Frame = 1
Query: 19 CAAHAVDLLLKDLGNLDFFADTLKRINKVVKFVKNHHSTSAFYESHTNLRLITPCATRFATNVIVTMRILK--TGVS----TDYIRTATVASVRAAGREVVSEISAGDALVGEFWFEVNVFVQLMEPLYALLRMGDG 411
CAAH VDL+LK++G L ++ K+ +++ NHH A+ T L+ P TRFATN I +LK G+ TD +T A A G++V G FW V VQ+++PLY +LR+ DG
Sbjct: 369 CAAHCVDLMLKEIGTLRPVKTVVEAGQKITRYIYNHHVVLAWMRESTGGELLRPAITRFATNFIALQSLLKHKDGLKRMFRTDRWMQSTFAGT-ADGKDV-----EGIVCNANFWDRVFKLVQIIKPLYEVLRVVDG 499
BLAST of mRNA_H-elongata_contig161002.3903.1 vs. uniprot
Match: A0A388LAH1_CHABU (RNA-directed DNA polymerase n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388LAH1_CHABU) HSP 1 Score: 70.5 bits (171), Expect = 2.150e-11 Identity = 50/144 (34.72%), Postives = 79/144 (54.86%), Query Frame = 1
Query: 1 RMSRIKCAAHAVDLLLKDLGNLDFFADTLKRINKVVKFVKNHHSTSAFYES-HTNLRLITPCATRFATNVIVTMRIL-KTGVSTDYIRTATVASVRAAGREVVSEISAGDALV------GEFWFEVNVFVQLMEPLYALLRMGD 408
R+ + CAAH LLL+D+ LD+ T+KR + +VKF++NHH+T++F S ++L L+ P RF + + RI + V D + + V +A R +++ A LV +W E+ V++MEPLY LLR D
Sbjct: 107 RIPWVPCAAHCCSLLLRDISKLDWVKGTVKRGHTIVKFIRNHHTTNSFMMSLDSSLTLLQPTEVRFGSVYRMLERIHNRRAVLKDMVDSMNVGKWKAM-RWSSAKLQAKADLVYFTLQRDAWWTELRKVVEMMEPLYLLLRRMD 249
BLAST of mRNA_H-elongata_contig161002.3903.1 vs. uniprot
Match: A0A388JUG5_CHABU (Uncharacterized protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388JUG5_CHABU) HSP 1 Score: 69.7 bits (169), Expect = 3.910e-11 Identity = 47/143 (32.87%), Postives = 74/143 (51.75%), Query Frame = 1
Query: 1 RMSRIKCAAHAVDLLLKDLGNLDFFADTLKRINKVVKFVKNHHSTSAFYES-HTNLRLITPCATRFATNVIVTMRIL-KTGVSTDYIRTATVASVRAAGREVVSEISAGDALV-----GEFWFEVNVFVQLMEPLYALLRMGD 408
R+ + CAAH LLL+D+ LD+ T+KR + +VKF++NHHST++ S + +L L+ P RF + ++ R+L + V +D + A S D + +W E+ V +MEPLY+LLR D
Sbjct: 578 RIPWVPCAAHCCSLLLQDISKLDWVKRTVKRGHTIVKFIRNHHSTNSLMMSMNDSLTLLRPMEVRFGSVYMMLERLLNRKAVLSDMVDRKNAARWTGIRWSTAKLKSKADLVYFTMRRDGWWMELKKVVDVMEPLYSLLRRMD 720
BLAST of mRNA_H-elongata_contig161002.3903.1 vs. uniprot
Match: A0A843TB08_COLES (Uncharacterized protein n=1 Tax=Colocasia esculenta TaxID=4460 RepID=A0A843TB08_COLES) HSP 1 Score: 69.3 bits (168), Expect = 5.120e-11 Identity = 46/136 (33.82%), Postives = 71/136 (52.21%), Query Frame = 1
Query: 19 CAAHAVDLLLKDLGNLDFFADTLKRINKVVKFVKNHHSTSAFYESHTNLRLITPCATRFATNVIVTMRILK--TGVSTDYIRTATVASVRAA---GREVVSEISAGDALVGEFWFEVNVFVQLMEPLYALLRMGDG 411
CAAH VDL+LK++G L + K+ +F+ NHH A+ T L+ P T FATN + +LK G+ + + S A+ G+EV S +++ + FW V +Q++EPLY +LR+ DG
Sbjct: 88 CAAHCVDLMLKEIGTLQPVKMVVDAGQKITRFIYNHHLVLAWMRESTGGELLRPAVTCFATNFVALQSLLKHKDGLKRMFRGDKWLQSNFASTSDGKEVESIVNSSN-----FWDRVFKLIQIIEPLYEVLRVVDG 218
BLAST of mRNA_H-elongata_contig161002.3903.1 vs. uniprot
Match: A0A843VI85_COLES (BED-type domain-containing protein n=1 Tax=Colocasia esculenta TaxID=4460 RepID=A0A843VI85_COLES) HSP 1 Score: 69.3 bits (168), Expect = 5.240e-11 Identity = 45/143 (31.47%), Postives = 70/143 (48.95%), Query Frame = 1
Query: 19 CAAHAVDLLLKDLGNLDFFADTLKRINKVVKFVKNHHSTSAFYESHTNLRLITPCATRFATNVIVTMRILK------------TGVSTDYIRTATVASVRAAGREVVSEISAGDALVGEFWFEVNVFVQLMEPLYALLRMGDG 411
CAAH VDL+LK++G L + K+ +F+ NHH A+ T L+ P TRFATN + +LK + +++ T+ G+EV +++ + FW V VQ++EPLY +LR+ DG
Sbjct: 445 CAAHCVDLMLKEIGTLQPVKMVVDAGQKITRFIYNHHLVLAWMRESTGGELLRPGVTRFATNFVALQSLLKHKDGLKRMFRGDKWLQSNFANTSD-------GKEVEGIVNSSN-----FWDRVFKLVQIIEPLYEVLRVVDG 575
BLAST of mRNA_H-elongata_contig161002.3903.1 vs. uniprot
Match: A0A388LVF2_CHABU (Integrase catalytic domain-containing protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388LVF2_CHABU) HSP 1 Score: 69.3 bits (168), Expect = 5.360e-11 Identity = 47/143 (32.87%), Postives = 73/143 (51.05%), Query Frame = 1
Query: 1 RMSRIKCAAHAVDLLLKDLGNLDFFADTLKRINKVVKFVKNHHSTSAFYES-HTNLRLITPCATRFATNVIVTMRIL-KTGVSTDYIRTATVASVRAAGREVVSEISAGDALV-----GEFWFEVNVFVQLMEPLYALLRMGD 408
R+ + CAAH LLL+D+ LD+ T+KR + +VKF++NHHST++ S +L L+ P RF + ++ R+L + V +D + A S D + +W E+ V +MEPLY+LLR D
Sbjct: 990 RIPWVPCAAHCCSLLLRDISKLDWVKSTVKRGHTIVKFIRNHHSTNSLMMSMDDSLTLLCPTKVRFGSVYMMLERLLNRKAVLSDMVDRKNAARWTGIRWSTTKLKSKADLVYFTMRRDGWWTELKKVVDVMEPLYSLLRRMD 1132
BLAST of mRNA_H-elongata_contig161002.3903.1 vs. uniprot
Match: A0A843TN79_COLES (Uncharacterized protein n=1 Tax=Colocasia esculenta TaxID=4460 RepID=A0A843TN79_COLES) HSP 1 Score: 68.9 bits (167), Expect = 7.130e-11 Identity = 47/136 (34.56%), Postives = 70/136 (51.47%), Query Frame = 1
Query: 19 CAAHAVDLLLKDLGNLDFFADTLKRINKVVKFVKNHHSTSAFYESHTNLRLITPCATRFATNVIVTMRILK--TGVSTDYIRTATVASVRAA---GREVVSEISAGDALVGEFWFEVNVFVQLMEPLYALLRMGDG 411
CAAH VDL+LK++G L + K+ F+ NHH A+ T L+ P TRFATN + +LK G+ + + S A+ G+EV +++ + FW V VQ++EPLY +LR+ DG
Sbjct: 325 CAAHCVDLMLKEIGTLQPVKMVVDAGQKITHFIYNHHLVLAWMRESTGGELLRPGVTRFATNFVALQSLLKHKDGLKRMFRGDKWLQSNFASTSDGKEVEGIVNSSN-----FWDRVFKLVQIIEPLYEVLRVVDG 455 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig161002.3903.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig161002.3903.1 >prot_H-elongata_contig161002.3903.1 ID=prot_H-elongata_contig161002.3903.1|Name=mRNA_H-elongata_contig161002.3903.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=139bp MSRIKCAAHAVDLLLKDLGNLDFFADTLKRINKVVKFVKNHHSTSAFYESback to top mRNA from alignment at H-elongata_contig161002:323..973+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig161002.3903.1 ID=mRNA_H-elongata_contig161002.3903.1|Name=mRNA_H-elongata_contig161002.3903.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=651bp|location=Sequence derived from alignment at H-elongata_contig161002:323..973+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig161002:323..973+ >mRNA_H-elongata_contig161002.3903.1 ID=mRNA_H-elongata_contig161002.3903.1|Name=mRNA_H-elongata_contig161002.3903.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=834bp|location=Sequence derived from alignment at H-elongata_contig161002:323..973+ (Himanthalia elongata Himel1 dioecious)back to top |