mRNA_H-elongata_contig160921.3899.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig160921.3899.1
Unique NamemRNA_H-elongata_contig160921.3899.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig160921.3899.1 vs. uniprot
Match: A0A6H5KVA0_9PHAE (Formate--tetrahydrofolate ligase n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KVA0_9PHAE)

HSP 1 Score: 112 bits (280), Expect = 1.810e-27
Identity = 55/62 (88.71%), Postives = 59/62 (95.16%), Query Frame = 1 
Query:    1 QVSLDVCKRLESSTNGNYVVVTGITPTPLGEGKSTTTIGLTQALGAHLGKRAFANIRQPSQG 186
            +VSLDVC+RLESS NGNYVVVTGI PTPLGEGKSTTT+GLTQALGAHLGK+ FANIRQPSQG
Sbjct:   53 KVSLDVCRRLESSPNGNYVVVTGINPTPLGEGKSTTTVGLTQALGAHLGKKVFANIRQPSQG 114
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BLAST of mRNA_H-elongata_contig160921.3899.1 vs. uniprot
Match: A0A484DTE1_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DTE1_BRELC)

HSP 1 Score: 99.4 bits (246), Expect = 6.240e-25
Identity = 50/62 (80.65%), Postives = 55/62 (88.71%), Query Frame = 1 
Query:    1 QVSLDVCKRLESSTNGNYVVVTGITPTPLGEGKSTTTIGLTQALGAHLGKRAFANIRQPSQG 186
            ++SL V  RLE+  NGNY+VVTGITPTPLGEGKSTTTIGL QALGAHLGK+AFA IRQPSQG
Sbjct:   78 KISLSVRNRLENQPNGNYIVVTGITPTPLGEGKSTTTIGLCQALGAHLGKKAFACIRQPSQG 139
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BLAST of mRNA_H-elongata_contig160921.3899.1 vs. uniprot
Match: A0A2P4YIN4_9STRA (Formate--tetrahydrofolate ligase n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YIN4_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 1.320e-23
Identity = 50/62 (80.65%), Postives = 55/62 (88.71%), Query Frame = 1 
Query:    1 QVSLDVCKRLESSTNGNYVVVTGITPTPLGEGKSTTTIGLTQALGAHLGKRAFANIRQPSQG 186
            ++SLDV  RL++  NGNYVVVTGITPTPLGEGKSTTTIGL QALGAHL K+AFA IRQPSQG
Sbjct:   52 KISLDVRDRLKNQPNGNYVVVTGITPTPLGEGKSTTTIGLCQALGAHLNKKAFACIRQPSQG 113
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BLAST of mRNA_H-elongata_contig160921.3899.1 vs. uniprot
Match: A0A8H7GV94_9ASCO (Uncharacterized protein n=1 Tax=Metschnikowia persimmonesis TaxID=2053757 RepID=A0A8H7GV94_9ASCO)

HSP 1 Score: 100 bits (249), Expect = 2.990e-23
Identity = 48/62 (77.42%), Postives = 54/62 (87.10%), Query Frame = 1 
Query:    1 QVSLDVCKRLESSTNGNYVVVTGITPTPLGEGKSTTTIGLTQALGAHLGKRAFANIRQPSQG 186
            +VSLD+ KRLE+  NG YV+VTGITPTPLGEGKSTTT+GL QALGAHLGK  FAN+RQPS G
Sbjct:  353 KVSLDILKRLENKVNGKYVLVTGITPTPLGEGKSTTTVGLAQALGAHLGKNVFANVRQPSMG 414
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BLAST of mRNA_H-elongata_contig160921.3899.1 vs. uniprot
Match: A0A2P7YD45_9ASCO (Uncharacterized protein n=9 Tax=Metschnikowiaceae incertae sedis TaxID=2937349 RepID=A0A2P7YD45_9ASCO)

HSP 1 Score: 100 bits (249), Expect = 3.010e-23
Identity = 48/62 (77.42%), Postives = 54/62 (87.10%), Query Frame = 1 
Query:    1 QVSLDVCKRLESSTNGNYVVVTGITPTPLGEGKSTTTIGLTQALGAHLGKRAFANIRQPSQG 186
            +VSLD+ KRLE+  NG YV+VTGITPTPLGEGKSTTT+GL QALGAHLGK  FAN+RQPS G
Sbjct:  353 KVSLDILKRLENKVNGKYVLVTGITPTPLGEGKSTTTVGLAQALGAHLGKNVFANVRQPSMG 414
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BLAST of mRNA_H-elongata_contig160921.3899.1 vs. uniprot
Match: A0A4P6XQQ7_9ASCO (Formate-tetrahydrofolate ligase n=2 Tax=Metschnikowia TaxID=27320 RepID=A0A4P6XQQ7_9ASCO)

HSP 1 Score: 100 bits (249), Expect = 3.010e-23
Identity = 48/62 (77.42%), Postives = 54/62 (87.10%), Query Frame = 1 
Query:    1 QVSLDVCKRLESSTNGNYVVVTGITPTPLGEGKSTTTIGLTQALGAHLGKRAFANIRQPSQG 186
            +VSLD+ KRLE+  NG YV+VTGITPTPLGEGKSTTT+GL QALGAHLGK  FAN+RQPS G
Sbjct:  353 KVSLDILKRLENKVNGKYVLVTGITPTPLGEGKSTTTVGLAQALGAHLGKNVFANVRQPSMG 414
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BLAST of mRNA_H-elongata_contig160921.3899.1 vs. uniprot
Match: A0A4Z1PD78_9PEZI (Formate-tetrahydrofolate ligase FTHFS n=4 Tax=Venturia TaxID=5024 RepID=A0A4Z1PD78_9PEZI)

HSP 1 Score: 99.8 bits (247), Expect = 5.610e-23
Identity = 50/62 (80.65%), Postives = 55/62 (88.71%), Query Frame = 1 
Query:    1 QVSLDVCKRLESSTNGNYVVVTGITPTPLGEGKSTTTIGLTQALGAHLGKRAFANIRQPSQG 186
            +VSLDV KRL+   NG YVVVTGITPTPLGEGKSTTT+GL+QALGAHLGK  FAN+RQPSQG
Sbjct:  349 KVSLDVIKRLDHRRNGRYVVVTGITPTPLGEGKSTTTMGLSQALGAHLGKICFANVRQPSQG 410
[Close]
BLAST of mRNA_H-elongata_contig160921.3899.1 vs. uniprot
Match: A0A4S2MI60_9PEZI (Putative C-1-tetrahydrofolate synthase mitochondrial n=1 Tax=Ascodesmis nigricans TaxID=341454 RepID=A0A4S2MI60_9PEZI)

HSP 1 Score: 99.4 bits (246), Expect = 7.650e-23
Identity = 50/62 (80.65%), Postives = 54/62 (87.10%), Query Frame = 1 
Query:    1 QVSLDVCKRLESSTNGNYVVVTGITPTPLGEGKSTTTIGLTQALGAHLGKRAFANIRQPSQG 186
            +VSLDV KRLE   NG YV+V GITPTPLGEGKSTTT+GLTQAL AHLGK AFAN+RQPSQG
Sbjct:  349 KVSLDVLKRLEHRKNGKYVLVAGITPTPLGEGKSTTTVGLTQALSAHLGKIAFANVRQPSQG 410
[Close]
BLAST of mRNA_H-elongata_contig160921.3899.1 vs. uniprot
Match: C4Y498_CLAL4 (Uncharacterized protein n=2 Tax=Clavispora lusitaniae TaxID=36911 RepID=C4Y498_CLAL4)

HSP 1 Score: 99.0 bits (245), Expect = 1.040e-22
Identity = 47/62 (75.81%), Postives = 54/62 (87.10%), Query Frame = 1 
Query:    1 QVSLDVCKRLESSTNGNYVVVTGITPTPLGEGKSTTTIGLTQALGAHLGKRAFANIRQPSQG 186
            +VSLD+ KRL++  NG YV+VTGITPTPLGEGKSTTT+GL QALGAHLGK  FAN+RQPS G
Sbjct:  353 KVSLDILKRLKNKVNGKYVLVTGITPTPLGEGKSTTTVGLAQALGAHLGKNVFANVRQPSMG 414
[Close]
BLAST of mRNA_H-elongata_contig160921.3899.1 vs. uniprot
Match: U7Q7I6_SPOS1 (Uncharacterized protein n=3 Tax=Sporothrix TaxID=29907 RepID=U7Q7I6_SPOS1)

HSP 1 Score: 98.2 bits (243), Expect = 1.950e-22
Identity = 49/62 (79.03%), Postives = 53/62 (85.48%), Query Frame = 1 
Query:    1 QVSLDVCKRLESSTNGNYVVVTGITPTPLGEGKSTTTIGLTQALGAHLGKRAFANIRQPSQG 186
            +V LDV KRLE   NG YVVVTGITPTPLGEGKSTTT+GL QALGAHLG+  FAN+RQPSQG
Sbjct:  349 KVDLDVLKRLEHRQNGRYVVVTGITPTPLGEGKSTTTMGLAQALGAHLGRLTFANVRQPSQG 410
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig160921.3899.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KVA0_9PHAE1.810e-2788.71Formate--tetrahydrofolate ligase n=2 Tax=Ectocarpu... [more]
A0A484DTE1_BRELC6.240e-2580.65Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]
A0A2P4YIN4_9STRA1.320e-2380.65Formate--tetrahydrofolate ligase n=1 Tax=Phytophth... [more]
A0A8H7GV94_9ASCO2.990e-2377.42Uncharacterized protein n=1 Tax=Metschnikowia pers... [more]
A0A2P7YD45_9ASCO3.010e-2377.42Uncharacterized protein n=9 Tax=Metschnikowiaceae ... [more]
A0A4P6XQQ7_9ASCO3.010e-2377.42Formate-tetrahydrofolate ligase n=2 Tax=Metschniko... [more]
A0A4Z1PD78_9PEZI5.610e-2380.65Formate-tetrahydrofolate ligase FTHFS n=4 Tax=Vent... [more]
A0A4S2MI60_9PEZI7.650e-2380.65Putative C-1-tetrahydrofolate synthase mitochondri... [more]
C4Y498_CLAL41.040e-2275.81Uncharacterized protein n=2 Tax=Clavispora lusitan... [more]
U7Q7I6_SPOS11.950e-2279.03Uncharacterized protein n=3 Tax=Sporothrix TaxID=2... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig160921contigH-elongata_contig160921:539..1464 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score114.0
Seed ortholog evalue2.5e-23
Seed eggNOG ortholog2880.D8LDA9
Preferred nameTHFS
KEGG rclassRC00026,RC00111,RC00202,RC00578
KEGG koko:K00288,ko:K01938
KEGG ReactionR00943,R01220,R01655
KEGG Pathwayko00670,ko00720,ko01100,ko01120,ko01200,map00670,map00720,map01100,map01120,map01200
KEGG ModuleM00140,M00141,M00377
GOsGO:0003674,GO:0003824,GO:0004329,GO:0004477,GO:0004488,GO:0005488,GO:0005507,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006082,GO:0006139,GO:0006144,GO:0006575,GO:0006725,GO:0006732,GO:0006760,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009112,GO:0009113,GO:0009256,GO:0009257,GO:0009396,GO:0009507,GO:0009536,GO:0009719,GO:0009725,GO:0009735,GO:0009987,GO:0010033,GO:0010035,GO:0010038,GO:0016020,GO:0016053,GO:0016491,GO:0016645,GO:0016646,GO:0016787,GO:0016810,GO:0016814,GO:0016874,GO:0016879,GO:0018130,GO:0019238,GO:0019438,GO:0019752,GO:0034641,GO:0042221,GO:0042398,GO:0042440,GO:0042558,GO:0042559,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043603,GO:0043604,GO:0043648,GO:0043650,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046112,GO:0046148,GO:0046394,GO:0046483,GO:0046653,GO:0046654,GO:0046686,GO:0046872,GO:0046914,GO:0048046,GO:0050896,GO:0051186,GO:0051188,GO:0055086,GO:0055114,GO:0071704,GO:0071944,GO:0072521,GO:0072522,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.formate-tetrahydrofolate ligase activity
EggNOG OGs2QSVW@2759,COG2759@1
Ec32 ortholog descriptionFormate-tetrahydrofolate ligase, FTHFS
Ec32 orthologEc-25_001900.1
EC1.5.1.5,3.5.4.9,6.3.4.3
COG Functional cat.F
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko04147
Hectar predicted targeting categoryother localisation
Exons2
Model size186
Cds size186
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929944.0582082-CDS-H-elongata_contig160921:538..6641622929944.0582082-CDS-H-elongata_contig160921:538..664Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig160921 539..664 +
1691679217.8376913-CDS-H-elongata_contig160921:538..6641691679217.8376913-CDS-H-elongata_contig160921:538..664Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig160921 539..664 +
1622929944.0827534-CDS-H-elongata_contig160921:1404..14641622929944.0827534-CDS-H-elongata_contig160921:1404..1464Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig160921 1405..1464 +
1691679217.850323-CDS-H-elongata_contig160921:1404..14641691679217.850323-CDS-H-elongata_contig160921:1404..1464Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig160921 1405..1464 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig160921.3899.1prot_H-elongata_contig160921.3899.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig160921 539..1464 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig160921.3899.1

>prot_H-elongata_contig160921.3899.1 ID=prot_H-elongata_contig160921.3899.1|Name=mRNA_H-elongata_contig160921.3899.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=62bp
QVSLDVCKRLESSTNGNYVVVTGITPTPLGEGKSTTTIGLTQALGAHLGK
RAFANIRQPSQG
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mRNA from alignment at H-elongata_contig160921:539..1464+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig160921.3899.1 ID=mRNA_H-elongata_contig160921.3899.1|Name=mRNA_H-elongata_contig160921.3899.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=926bp|location=Sequence derived from alignment at H-elongata_contig160921:539..1464+ (Himanthalia elongata Himel1 dioecious)
CAGGTGTCGCTCGATGTGTGCAAGCGCTTGGAGAGCTCTACGAACGGAAA
CTACGTGGTCGTAACGGGCATCACCCCGACGCCGCTCGGAGAAGGAAAGA
GCACCACCACGATCGGGTTGACGCAGGTACCGGTACTGACCTCTCTATAT
TTTTGTCATAGTCTTTCTTTCTGTCATAGTCTCTATTTCTGTATATTTTC
CCCGGTGCTTCGTGCTTCCAACACTATGATTGTCACCCAGCGCGAACCTT
CTGAGCGTTCGTGTTTTTTTTTTGTTTTTTTTAGCGTTCGTGGTACCAAG
TACAAGATGAACATTATATGGTCTATGGTCGCAATAACGACAATAAGGAC
ACGACACGACACCGTAACCATAGCAAAACGCTAGCAGTGTTTTTTTTTAT
GGATAGAAGTCGAAAATGATGACCTTTTTTGCATCCACCGTCCACATGAA
TCTCAATCCAGTGATCTCCCCGAACCCTAAAGCAGAAAAACTCCTGAAAT
GGTAGAAAACCCCGAGAAAAGGATGTGCAGGTCTAAAACAAAATTTCAAC
GACAACCTCAAGAACATATCTTCACCGAAAACGGACGTGTCATCTCGGAT
GCGTCCCTCGTGTGGCGATACGACGGCCCCCCGCCACATACGCGTATGCA
TCCCCTCATTATCTCTACCAAGAGTACACAAAGAAACATCGAACGCACAT
TGTTGTTAGCCAGTCTTGCGCATCTTTCTCGGCTTCACACATTTTCAACT
TACCGTGCGACTCACTCGACCACTCACAATGACGGCCGCGGGACGGGGGG
CGGGACGGGATTGGATTGGATGGGATGGAATACGACGGGACGGATCGAAT
ATCCCTTGCGCGGAAGGCCCTCGGGGCCCATCTCGGCAAGCGCGCCTTCG
CGAACATCCGACAGCCCTCGCAGGGG
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Coding sequence (CDS) from alignment at H-elongata_contig160921:539..1464+

>mRNA_H-elongata_contig160921.3899.1 ID=mRNA_H-elongata_contig160921.3899.1|Name=mRNA_H-elongata_contig160921.3899.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=372bp|location=Sequence derived from alignment at H-elongata_contig160921:539..1464+ (Himanthalia elongata Himel1 dioecious)
CAGGTGTCGCTCGATGTGTGCAAGCGCTTGGAGAGCTCTACGAACGGAAA
CTACGTGGTCGTAACGGGCATCACCCCGACGCCGCTCGGAGAAGGAAAGA
GCACCACCACGATCGGGTTGACGCAGCAGGTGTCGCTCGATGTGTGCAAG
CGCTTGGAGAGCTCTACGAACGGAAACTACGTGGTCGTAACGGGCATCAC
CCCGACGCCGCTCGGAGAAGGAAAGAGCACCACCACGATCGGGTTGACGC
AGGCCCTCGGGGCCCATCTCGGCAAGCGCGCCTTCGCGAACATCCGACAG
CCCTCGCAGGGGGCCCTCGGGGCCCATCTCGGCAAGCGCGCCTTCGCGAA
CATCCGACAGCCCTCGCAGGGG
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