mRNA_H-elongata_contig160873.3897.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig160873.3897.1
Unique NamemRNA_H-elongata_contig160873.3897.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig160873.3897.1 vs. uniprot
Match: A0A6H5KKD6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKD6_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 3.380e-21
Identity = 44/47 (93.62%), Postives = 45/47 (95.74%), Query Frame = 1 
Query:    7 PAWMRQRWVQVGKTDEEANVPVAPSPVTDAEFDEMVRSCVRNDAMEK 147
            PAWMRQRWVQVGKTD EANVPV PSPVTDA+FDEMVRSCVRNDAMEK
Sbjct:  252 PAWMRQRWVQVGKTDAEANVPVTPSPVTDADFDEMVRSCVRNDAMEK 298
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BLAST of mRNA_H-elongata_contig160873.3897.1 vs. uniprot
Match: D7FTP0_ECTSI (Similar to E1a binding protein P400 (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTP0_ECTSI)

HSP 1 Score: 94.0 bits (232), Expect = 3.390e-21
Identity = 44/47 (93.62%), Postives = 45/47 (95.74%), Query Frame = 1 
Query:    7 PAWMRQRWVQVGKTDEEANVPVAPSPVTDAEFDEMVRSCVRNDAMEK 147
            PAWMRQRWVQVGKTD EANVPV PSPVTDA+FDEMVRSCVRNDAMEK
Sbjct:  144 PAWMRQRWVQVGKTDAEANVPVTPSPVTDADFDEMVRSCVRNDAMEK 190
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig160873.3897.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KKD6_9PHAE3.380e-2193.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FTP0_ECTSI3.390e-2193.62Similar to E1a binding protein P400 (Partial) (Fra... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig160873contigH-elongata_contig160873:213..359 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score87.8
Seed ortholog evalue1.4e-15
Seed eggNOG ortholog2880.D7FTP0
KEGG koko:K11320
EggNOG free text desc.helicase activity
EggNOG OGsCOG0553@1,KOG0391@2759
COG Functional cat.KL
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03036
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size147
Cds size132
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929943.7861445-CDS-H-elongata_contig160873:212..3441622929943.7861445-CDS-H-elongata_contig160873:212..344Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig160873 213..344 -
1691679217.6834052-CDS-H-elongata_contig160873:212..3441691679217.6834052-CDS-H-elongata_contig160873:212..344Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig160873 213..344 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929943.8024442-UTR-H-elongata_contig160873:344..3591622929943.8024442-UTR-H-elongata_contig160873:344..359Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig160873 345..359 -
1691679217.696574-UTR-H-elongata_contig160873:344..3591691679217.696574-UTR-H-elongata_contig160873:344..359Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig160873 345..359 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig160873.3897.1prot_H-elongata_contig160873.3897.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig160873 213..344 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig160873.3897.1

>prot_H-elongata_contig160873.3897.1 ID=prot_H-elongata_contig160873.3897.1|Name=mRNA_H-elongata_contig160873.3897.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=44bp
MRQRWVQVGKTDEEANVPVAPSPVTDAEFDEMVRSCVRNDAMEK
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mRNA from alignment at H-elongata_contig160873:213..359-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig160873.3897.1 ID=mRNA_H-elongata_contig160873.3897.1|Name=mRNA_H-elongata_contig160873.3897.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=147bp|location=Sequence derived from alignment at H-elongata_contig160873:213..359- (Himanthalia elongata Himel1 dioecious)
TCGAGGCCAGCGTGGATGCGGCAGCGGTGGGTGCAGGTCGGCAAGACGGA
CGAAGAAGCCAACGTCCCCGTGGCGCCATCGCCGGTGACGGACGCAGAGT
TCGATGAGATGGTTCGGTCGTGTGTCCGTAACGACGCCATGGAGAAG
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Coding sequence (CDS) from alignment at H-elongata_contig160873:213..359-

>mRNA_H-elongata_contig160873.3897.1 ID=mRNA_H-elongata_contig160873.3897.1|Name=mRNA_H-elongata_contig160873.3897.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=264bp|location=Sequence derived from alignment at H-elongata_contig160873:213..359- (Himanthalia elongata Himel1 dioecious)
ATGCGGCAGCGGTGGGTGCAGGTCGGCAAGACGGACGAAGAAGCCAACGT
CCCCGTGGCGCCATCGCCGGTGACGGACGCAGAGTTCGATGAGATGGTTC
GGTCGTGTGTCCGTAACGACGCCATGGAGAAGATGCGGCAGCGGTGGGTG
CAGGTCGGCAAGACGGACGAAGAAGCCAACGTCCCCGTGGCGCCATCGCC
GGTGACGGACGCAGAGTTCGATGAGATGGTTCGGTCGTGTGTCCGTAACG
ACGCCATGGAGAAG
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