mRNA_H-elongata_contig160856.3896.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig160856.3896.1
Unique NamemRNA_H-elongata_contig160856.3896.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig160856.3896.1 vs. uniprot
Match: D7FH45_ECTSI (ERCC4 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH45_ECTSI)

HSP 1 Score: 119 bits (299), Expect = 5.050e-30
Identity = 57/61 (93.44%), Postives = 59/61 (96.72%), Query Frame = 1 
Query:    1 WHRVGFKTKQLLQDLKTLRSLLDYVFRYDAITFYQLLLSEKRKAAAVRDPPLWMGTAAADR 183
            WHRVGFKTKQLLQDLKTLRSLLDYVFRYDAITFYQLLL EK KAAAVRDPPLW+GT+AADR
Sbjct:  404 WHRVGFKTKQLLQDLKTLRSLLDYVFRYDAITFYQLLLGEKSKAAAVRDPPLWIGTSAADR 464
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BLAST of mRNA_H-elongata_contig160856.3896.1 vs. uniprot
Match: A0A6H5JEA6_9PHAE (ERCC4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEA6_9PHAE)

HSP 1 Score: 119 bits (299), Expect = 5.060e-30
Identity = 57/61 (93.44%), Postives = 59/61 (96.72%), Query Frame = 1 
Query:    1 WHRVGFKTKQLLQDLKTLRSLLDYVFRYDAITFYQLLLSEKRKAAAVRDPPLWMGTAAADR 183
            WHRVGFKTKQLLQDLKTLRSLLDYVFRYDAITFYQLLL EK KAAAVRDPPLW+GT+AADR
Sbjct:  389 WHRVGFKTKQLLQDLKTLRSLLDYVFRYDAITFYQLLLGEKSKAAAVRDPPLWIGTSAADR 449
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BLAST of mRNA_H-elongata_contig160856.3896.1 vs. uniprot
Match: A0A482S402_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S402_9ARCH)

HSP 1 Score: 68.6 bits (166), Expect = 4.630e-12
Identity = 30/61 (49.18%), Postives = 41/61 (67.21%), Query Frame = 1 
Query:    1 WHRVGFKTKQLLQDLKTLRSLLDYVFRYDAITFYQLLLSEKRKAAAVRDPPLWMGTAAADR 183
            WHR+ F+TKQ++ DL  LR LLDY+ RYDA +FY LL+     +     P LW+ TAAA++
Sbjct:  301 WHRIAFRTKQIVGDLTVLRKLLDYLVRYDAFSFYYLLMKLHAASKEQHSPSLWLTTAAAEQ 361
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BLAST of mRNA_H-elongata_contig160856.3896.1 vs. uniprot
Match: A0A1Z5JRX1_FISSO (DNA excision repair protein ERCC-4 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JRX1_FISSO)

HSP 1 Score: 68.2 bits (165), Expect = 6.800e-12
Identity = 31/60 (51.67%), Postives = 44/60 (73.33%), Query Frame = 1 
Query:    1 WHRVGFKTKQLLQDLKTLRSLLDYVFRYDAITFYQLLLSEKRKAAAVRDPPLWMGTAAAD 180
            WHR+  +TKQL+QDL+TLR+L   +  YD ++FY+LLLS +  +AA R P +W+ T AAD
Sbjct:  308 WHRLSPETKQLIQDLRTLRTLFQNLLTYDCVSFYKLLLSIQSMSAASRHPSMWLLTPAAD 367
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BLAST of mRNA_H-elongata_contig160856.3896.1 vs. uniprot
Match: A0A6G0WJQ9_9STRA (ERCC4 domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WJQ9_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 9.290e-12
Identity = 31/61 (50.82%), Postives = 42/61 (68.85%), Query Frame = 1 
Query:    1 WHRVGFKTKQLLQDLKTLRSLLDYVFRYDAITFYQLLLSEKRKAAAVRDPPLWMGTAAADR 183
            WH++  KTKQL  DL  LR LL Y+ RYDAIT+Y  L+++K+++   R P  W+ T AADR
Sbjct:  264 WHQLPAKTKQLCSDLTVLRHLLAYLTRYDAITYYSFLMTQKKQSGQQRVPSAWLVTEAADR 324
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BLAST of mRNA_H-elongata_contig160856.3896.1 vs. uniprot
Match: A0A7S1ZEI6_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZEI6_TRICV)

HSP 1 Score: 64.7 bits (156), Expect = 2.140e-11
Identity = 28/60 (46.67%), Postives = 43/60 (71.67%), Query Frame = 1 
Query:    1 WHRVGFKTKQLLQDLKTLRSLLDYVFRYDAITFYQLLLSEKRKAAAVRDPPLWMGTAAAD 180
            WHR+   TKQL+ DL+TLR+L  Y+ +YD + F++L+ S +  +AA R+P +W+ T AAD
Sbjct:   87 WHRLKPATKQLVNDLRTLRTLFQYLVQYDCVGFWRLICSVRTMSAAARNPSMWLLTPAAD 146
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BLAST of mRNA_H-elongata_contig160856.3896.1 vs. uniprot
Match: A0A7S2XSK0_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XSK0_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 4.440e-11
Identity = 29/60 (48.33%), Postives = 44/60 (73.33%), Query Frame = 1 
Query:    1 WHRVGFKTKQLLQDLKTLRSLLDYVFRYDAITFYQLLLSEKRKAAAVRDPPLWMGTAAAD 180
            WHR+  +TKQL+ DL+TLRSL  Y+  YD ++F++L+ S +  +AA R+P +W+ T AAD
Sbjct:  345 WHRLKPQTKQLVNDLRTLRSLFQYLIHYDCVSFWKLINSIRTMSAASRNPSMWLLTPAAD 404
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BLAST of mRNA_H-elongata_contig160856.3896.1 vs. uniprot
Match: A0A6A5AUH5_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5AUH5_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 5.980e-11
Identity = 32/61 (52.46%), Postives = 41/61 (67.21%), Query Frame = 1 
Query:    1 WHRVGFKTKQLLQDLKTLRSLLDYVFRYDAITFYQLLLSEKRKAAAVRDPPLWMGTAAADR 183
            WH++  KTKQL  DL  LR LL Y+ RYDAITFY  LL++K+ +   R P  W+ + AADR
Sbjct:  266 WHQLPAKTKQLSADLTHLRQLLSYLTRYDAITFYSYLLTQKKLSGQQRIPSPWLFSEAADR 326
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BLAST of mRNA_H-elongata_contig160856.3896.1 vs. uniprot
Match: A0A8J9X6T6_PHATR (Hypothetical protein (Fragment) n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9X6T6_PHATR)

HSP 1 Score: 65.5 bits (158), Expect = 6.000e-11
Identity = 31/60 (51.67%), Postives = 44/60 (73.33%), Query Frame = 1 
Query:    1 WHRVGFKTKQLLQDLKTLRSLLDYVFRYDAITFYQLLLSEKRKAAAVRDPPLWMGTAAAD 180
            WHR+  +TKQL+QDL+TLR+L   + +YD +TF++L+ S K  +AA R P LW+ T AAD
Sbjct:  338 WHRLKPQTKQLVQDLRTLRTLFQSLIQYDCVTFWKLINSIKTMSAASRYPSLWLLTPAAD 397
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BLAST of mRNA_H-elongata_contig160856.3896.1 vs. uniprot
Match: W4GRV4_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GRV4_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 6.020e-11
Identity = 32/61 (52.46%), Postives = 41/61 (67.21%), Query Frame = 1 
Query:    1 WHRVGFKTKQLLQDLKTLRSLLDYVFRYDAITFYQLLLSEKRKAAAVRDPPLWMGTAAADR 183
            WH++  KTKQL  DL  LR LL Y+ RYDAITFY  LL++K+ +   R P  W+ + AADR
Sbjct:  266 WHQLPAKTKQLSADLTHLRQLLSYLTRYDAITFYSYLLTQKKLSGQQRIPSPWLFSEAADR 326
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig160856.3896.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FH45_ECTSI5.050e-3093.44ERCC4 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JEA6_9PHAE5.060e-3093.44ERCC4 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A482S402_9ARCH4.630e-1249.18Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A1Z5JRX1_FISSO6.800e-1251.67DNA excision repair protein ERCC-4 n=2 Tax=Fistuli... [more]
A0A6G0WJQ9_9STRA9.290e-1250.82ERCC4 domain-containing protein n=1 Tax=Aphanomyce... [more]
A0A7S1ZEI6_TRICV2.140e-1146.67Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
A0A7S2XSK0_9STRA4.440e-1148.33Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A6A5AUH5_9STRA5.980e-1152.46Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A8J9X6T6_PHATR6.000e-1151.67Hypothetical protein (Fragment) n=2 Tax=Phaeodacty... [more]
W4GRV4_9STRA6.020e-1152.46Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig160856contigH-elongata_contig160856:151..1271 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score119.4
Seed ortholog evalue5.9e-25
Seed eggNOG ortholog2880.D7FH45
Preferred nameRAD1
KEGG koko:K10848
KEGG Pathwayko03420,ko03460,map03420,map03460
GOsGO:0000003,GO:0000014,GO:0000109,GO:0000110,GO:0000280,GO:0000710,GO:0000712,GO:0000724,GO:0000725,GO:0000726,GO:0000735,GO:0000736,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0003697,GO:0003824,GO:0004518,GO:0004519,GO:0004520,GO:0004536,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006139,GO:0006259,GO:0006277,GO:0006281,GO:0006289,GO:0006296,GO:0006298,GO:0006302,GO:0006310,GO:0006312,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006979,GO:0006996,GO:0007049,GO:0007059,GO:0007127,GO:0007131,GO:0007530,GO:0007531,GO:0007533,GO:0007534,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009314,GO:0009628,GO:0009987,GO:0016043,GO:0016787,GO:0016788,GO:0018130,GO:0019438,GO:0022402,GO:0022413,GO:0022414,GO:0030154,GO:0032502,GO:0032505,GO:0032991,GO:0033554,GO:0033683,GO:0034641,GO:0034645,GO:0034654,GO:0035822,GO:0035825,GO:0036297,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045002,GO:0045132,GO:0045165,GO:0046483,GO:0048285,GO:0048869,GO:0050896,GO:0051304,GO:0051307,GO:0051321,GO:0051716,GO:0061982,GO:0071704,GO:0071840,GO:0071897,GO:0090304,GO:0090305,GO:0097159,GO:0098813,GO:0140013,GO:0140097,GO:1901255,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1903046,GO:1990391,GO:1990599
EggNOG free text desc.resolution of meiotic recombination intermediates
EggNOG OGsCOG1948@1,KOG0442@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03032,ko03400
Hectar predicted targeting categoryother localisation
Exons2
Model size183
Cds size183
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929943.736386-CDS-H-elongata_contig160856:150..1801622929943.736386-CDS-H-elongata_contig160856:150..180Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig160856 151..180 +
1691679217.6606154-CDS-H-elongata_contig160856:150..1801691679217.6606154-CDS-H-elongata_contig160856:150..180Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig160856 151..180 +
1622929943.747693-CDS-H-elongata_contig160856:1118..12711622929943.747693-CDS-H-elongata_contig160856:1118..1271Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig160856 1119..1271 +
1691679217.6729512-CDS-H-elongata_contig160856:1118..12711691679217.6729512-CDS-H-elongata_contig160856:1118..1271Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig160856 1119..1271 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig160856.3896.1prot_H-elongata_contig160856.3896.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig160856 151..1271 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig160856.3896.1

>prot_H-elongata_contig160856.3896.1 ID=prot_H-elongata_contig160856.3896.1|Name=mRNA_H-elongata_contig160856.3896.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=61bp
WHRVGFKTKQLLQDLKTLRSLLDYVFRYDAITFYQLLLSEKRKAAAVRDP
PLWMGTAAADR
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mRNA from alignment at H-elongata_contig160856:151..1271+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig160856.3896.1 ID=mRNA_H-elongata_contig160856.3896.1|Name=mRNA_H-elongata_contig160856.3896.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1121bp|location=Sequence derived from alignment at H-elongata_contig160856:151..1271+ (Himanthalia elongata Himel1 dioecious)
TGGCACCGCGTAGGTTTCAAGACCAAGCAGGTTTTTGCTTTTTGGCATAC
ATAGTTTGATATATAACTATGATTTTTCTTCTTTTGCCCTACTGGTGTTT
GCATTTGTAGGTGGAGGCGTTTTTCAACACTAATTCTTATATGCGTATGT
ATATCTATGTTCTATGTTGCTGGGTTGTTTTTTTGTGTATTTTGTATGTT
TGTGTATTTTTATGTCCCGCGCTGATAACGCCTCCCAGGCCAGCCACCCC
ACGAAAACCCTTGATTGCTCTCGCGAAACCACAGGGTGAGGGGGTTAAAA
ACGAACATTGGTCATTCTCAAGAAGGGTACAAGCAGGTTCAAAAATATCG
TGTACTAGATAGAGCCTGTCCAATACTTCACATATAGTACAACTCTGCTT
TGATGCGCGTGCTATATACTCTGATTTGATGTGATATACCAAACTGGAGT
ATACGCTGGACGTGGTGAGGTTTTGCAGAGCGTTCCTTGCGCCCCCCCCC
CCCAAAGGAAACGACTTGATAACTTGGTTAATCGGTAAACGATTCTGAGA
ACGGTTGCAGTTGGTTTAACGAAATGCGACCGAAGGGGATGCCCTCCAGC
GGCGCGCCGGCTTTATGGTGTGTGTTGCCATTAACACGTGACCATGGTCT
GACGGAGCCGCTTCCACAGTACTATAGTCTATTGTTTTAACTATTAACAT
CATACCATATTTTGCTTTTAACTATTAGCACCATACCATATTGGTTTAAC
TATTAGCACCATACCATATTGCTTGAACGATTAGCACCATACCATATTGC
TTTAACGATTAGCACCATACCATATTGCTTGAACTAATAGCTCCTCTTCT
GAATCGATGCACAATATCAATATCAAGTGTACTTTCCCTATATATTTATA
TATATATATATGTATCACTCTCCCTCTGTATCTCCCAATCATGTCCCTTT
GCTTGTATTGTATTCTAGCTTCTACAAGACCTCAAGACCCTGCGGTCACT
GCTGGACTACGTGTTTCGCTACGATGCCATAACCTTCTACCAACTCCTTC
TCTCCGAAAAAAGAAAGGCCGCGGCAGTTCGAGATCCCCCCCTCTGGATG
GGAACAGCTGCGGCCGACAGG
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Coding sequence (CDS) from alignment at H-elongata_contig160856:151..1271+

>mRNA_H-elongata_contig160856.3896.1 ID=mRNA_H-elongata_contig160856.3896.1|Name=mRNA_H-elongata_contig160856.3896.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=366bp|location=Sequence derived from alignment at H-elongata_contig160856:151..1271+ (Himanthalia elongata Himel1 dioecious)
TGGCACCGCGTAGGTTTCAAGACCAAGCAGTGGCACCGCGTAGGTTTCAA
GACCAAGCAGCTTCTACAAGACCTCAAGACCCTGCGGTCACTGCTGGACT
ACGTGTTTCGCTACGATGCCATAACCTTCTACCAACTCCTTCTCTCCGAA
AAAAGAAAGGCCGCGGCAGTTCGAGATCCCCCCCTCTGGATGGGAACAGC
TGCGGCCGACAGGCTTCTACAAGACCTCAAGACCCTGCGGTCACTGCTGG
ACTACGTGTTTCGCTACGATGCCATAACCTTCTACCAACTCCTTCTCTCC
GAAAAAAGAAAGGCCGCGGCAGTTCGAGATCCCCCCCTCTGGATGGGAAC
AGCTGCGGCCGACAGG
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