mRNA_H-elongata_contig16070.3892.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig16070.3892.1
Unique NamemRNA_H-elongata_contig16070.3892.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig16070.3892.1 vs. uniprot
Match: D7G7T4_ECTSI (Protein binding protein, putative n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7T4_ECTSI)

HSP 1 Score: 447 bits (1149), Expect = 6.920e-142
Identity = 388/574 (67.60%), Postives = 416/574 (72.47%), Query Frame = 1 
Query:    4 AGRGGRGRGMVLPAWMTQGK-VQPVAGALGADKAVSSGAVLQEQ-RAPGGLQDTALSRPTFSQPP--PVVT---SKPPPGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--------------------------------------RAGLGYTPPPGSAPIQRAASSFSTPQAPQQTPAQPXXXXXXXXXXXXXXXXXXXXXXXXQRAPYGMPLQXXXXXXXXXXXXXXQALMGGMPPMMMPMQQYGRPPMMPTMAPPRLXXXXMFPPTHGWSEHKAPDGRPYFYNSITRVSTYDKPNELKTPQEKVAAVAATTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKIEEEKVTYETEEEKKEAFIEMLRECEVTSTTKWPETQKYCQSDPRWELLRKGTRRQIWTEYQHKRRKEETEEKRAKAKKARMGFMKMLAQNTQIDGRSRWDDAERMLRDDPRFRAVPDSSDREDLFNEFVEALTKKEKEDRRAAHKKATDRFVEFLEDDHVSLGITHRTIWRDVRDTIERKAPAETDVLDDPDRRRLFDHLTVKLIKA 1590
            AGRGGRGRGMVLPAWMTQ K VQPVAG LG+DKAV++G  +QEQ RAPGGLQD ALSR  FSQ P  P  T   +KPPP       XXXXXXXXXXXXXXXXXXXXXXXX                                      RAGLG+TPPPG+AP QRA SSF             XXXXXXXXXXXXXXXXXXXXXXXX          XXXXXXXXXXXXXX          + P   YGRPPM P MAP   XXXX+ P  HGW+EHKAPDGRPY+YNSITRVS+YDKP ELKTPQEK A       XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                      KV Y TEEEKKEAF+EML+ECEVTSTTKWPETQ+YCQSDPRWELLRKG+RRQ WTEYQ+KRRKEE EEKR+KAKKARMGFMKMLAQNTQIDGRSRWD+AER LRDD RF+AVPDS+DREDLFNEFVEALTKKEKEDRRAA K A++RFVEFLE++++SLGIT RT WRD RD IERKAPAETDVL+D DRRRL D L  KL KA
Sbjct:    9 AGRGGRGRGMVLPAWMTQNKGVQPVAGGLGSDKAVAAGMTVQEQQRAPGGLQDAALSR--FSQAPRAPAATPASTKPPPSVGGARPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRXXXXXXXXGRAGLGFTPPPGAAPAQRATSSFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVPP---YGRPPMAPGMAPXXXXXXXVAPVAHGWTEHKAPDGRPYYYNSITRVSSYDKPVELKTPQEKAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKNKGGKKGKPAVA---------KVEYNTEEEKKEAFVEMLKECEVTSTTKWPETQRYCQSDPRWELLRKGSRRQTWTEYQNKRRKEEAEEKRSKAKKARMGFMKMLAQNTQIDGRSRWDEAERTLRDDARFKAVPDSADREDLFNEFVEALTKKEKEDRRAAQKLASERFVEFLEEEYLSLGITFRTTWRDSRDVIERKAPAETDVLEDNDRRRLLDDLVTKLCKA 568
[Close]
BLAST of mRNA_H-elongata_contig16070.3892.1 vs. uniprot
Match: A0A6S9FUY3_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9FUY3_HETAK)

HSP 1 Score: 149 bits (375), Expect = 3.770e-35
Identity = 94/193 (48.70%), Postives = 125/193 (64.77%), Query Frame = 1 
Query: 1015 AFIEMLRECEVTSTTKWPETQKYCQSDPRWELLRK-GTRRQIWTEYQHKRRKEETEEKRAKAKKARMGFMKMLAQNTQIDGRSRWDDAERMLRDDPRFRAVPDSSDREDLFNEFVEALTKKEKEDRRAAHKKATDRFVEFLEDDHVSLGITHRTIWRDVRDTIERKAPAET-DVLDDPDRRRLFDHLTVKLIK 1587
            AF EML E  V STTKW +  K C+ D RW  L   G RRQ   EYQ KR +EE EEKR +A++AR GF+KMLA+NT+ID  +RW +AE +L  D RF AV D++DREDLF +FV  L KKEKE+++AA K+A     E+L  D    G+TH++ ++D+ D ++ KA +   D LD  D R LF+    +L K
Sbjct:   42 AFKEMLLERGVASTTKWSDAVKACEGDKRWRALGTLGERRQALAEYQTKRLREEKEEKRLRARRARDGFLKMLAENTRIDSTTRWREAEDILGKDARFGAVEDTADREDLFKDFVTELGKKEKEEKKAARKEAKKALEEYLAAD--GTGLTHKSRFKDLYDDLKDKARSRGWDALDKDDMRDLFEDRIKELKK 232
[Close]
BLAST of mRNA_H-elongata_contig16070.3892.1 vs. uniprot
Match: A0A835ZHL9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHL9_9STRA)

HSP 1 Score: 145 bits (365), Expect = 4.790e-33
Identity = 86/202 (42.57%), Postives = 126/202 (62.38%), Query Frame = 1 
Query:  988 YETEEEKKEAFIEMLRECEVTSTTKWPETQKYCQSDPRWELLRKGTRRQIWTEYQHKRRKEETEEKRAKAKKARMGFMKMLAQNTQIDGRSRWDDAERMLRDDPRFRAVPDSSDREDLFNEFVEALTKKEKEDRRAAHKKATDRFVEFLED-DHVSLGITHRTIWRDVRDTIERKAPAET--DVLDDPDRRRLFDHLTVKLI 1584
            Y+T ++KKEAF+ +L + EVTS TKW + +K C  DPRW +L+KG RRQ  TEYQ+ RRKEE +E+RA+AKKA+  F+KMLA N  IDG +RW +A+ +L  D RF+ V D   RE++F EF E L K+++E+     K+A   + E +   +   L ITH T W +V   +   A  +    V+ + ++R +F     KL+
Sbjct:  377 YKTFKQKKEAFMSLLADEEVTSGTKWADIEKACAEDPRWLVLKKGERRQTATEYQNMRRKEEAKEERARAKKAKDAFLKMLATNFSIDGNTRWTEAKDLLASDIRFQNVQDDRIREEIFMEFTEELRKRDREEESKRRKQALAAYAELVAGANQAGLNITHTTKWSEVSMALADMAAPDPLLSVITETEKRGIFQEHVTKLL 578
[Close]
BLAST of mRNA_H-elongata_contig16070.3892.1 vs. uniprot
Match: A0A7C8ZF53_OPUST (Uncharacterized protein (Fragment) n=2 Tax=Opuntia streptacantha TaxID=393608 RepID=A0A7C8ZF53_OPUST)

HSP 1 Score: 101 bits (252), Expect = 1.640e-19
Identity = 73/200 (36.50%), Postives = 112/200 (56.00%), Query Frame = 1 
Query:  967 IEEEKVTYETEEEKKEAFIEMLRECEVTSTTKWPETQKYCQSDPRWELLRK-GTRRQIWTEYQHKRRKEETEEKRAKAKKARMGFMKMLAQNTQIDGRSRWDDAERMLRDDPRFRAVPDSSDREDLFNEFVEALTKKEKEDRRAAHKKATDRFVEFLEDDHVSLG-ITHRTIWRDVRDTIERKAPAETDVLDDPDRRRLF 1560
            IE E V Y  ++E K+AF  +L    V S   W +T +   +D R+  LR  G R+Q + EY ++++K+E EE+RA+ KKAR  F KML + +++   +RW  A ++  DD RF+AV  + DRED+F E++  L KKE E      ++    + +FLE    S G I   + WR V+D +E  A      L+  DR ++F
Sbjct:  113 IEHETVLYANKQEAKDAFKALLESVRVESDWTWEQTMRLIINDKRYAALRSLGERKQAFNEYLNQKKKQEAEERRARNKKAREDFRKMLEECSELTSTTRWGKAVKIFGDDERFKAVERARDREDMFEEYLAELGKKELEKAEEDRQRNIIEYRQFLE----SCGFIKANSQWRKVKDRLE--ADERCSQLETMDRLKIF 306
[Close]
BLAST of mRNA_H-elongata_contig16070.3892.1 vs. uniprot
Match: A0A158Q3R6_DRAME (Uncharacterized protein n=1 Tax=Dracunculus medinensis TaxID=318479 RepID=A0A158Q3R6_DRAME)

HSP 1 Score: 101 bits (252), Expect = 6.920e-19
Identity = 114/308 (37.01%), Postives = 169/308 (54.87%), Query Frame = 1 
Query:  688 WSEHKAPDGRPYFYNSITRVSTYDKPNELKTPQEKVAAVAATTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXK-------------IEEEKVTYETEEEKKEA--FIEMLR----ECEVTSTTKWPETQKYCQSDPRWELLRK-GTRRQIWTEYQHKRRKEETEEKRAKAKKARMGFMKMLAQNTQIDGRSRWDDAERMLRDDPRFRAVPDSSDREDLFNEFVEALTKKEKEDRRAAHKKATDRFVEFLEDDHVSLGITHRTIWRDV-RDTIERKAPAETDVLDDPDR 1548
            WSEH A DGR Y+YN IT+ S++ KP+ELKTP+EK AA      XXXXXXXXXXXXXXXXXXXXXXXX                        +             + E++V  E E +KK+A  F E+LR    E ++TST+ W  T KY Q DPR+ +L K   ++Q++  ++ +R+KEE +EKR   KKA+    + L  + ++    R+  AE +  ++P ++AV DS +R+++F + +E + K+EKE+ ++  ++      + LE       IT++T W    R  IE  A A    L   D+
Sbjct:  136 WSEHTASDGRIYYYNKITKQSSWLKPDELKTPEEKKAASLKLXXXXXXXXXXXXXXXXXXXXXXXXXXKDFEPSNKEEKKENTESKIATIPKEEMTTNPKTDIIEAVGEDEVDEEKELKKKQADKFRELLRDKYNEGKITSTSSWDNTVKYIQHDPRFRILNKVSEKKQLFNAWKVQRQKEERDEKRIAIKKAKEELEQWLQNHPKVRATMRYSKAESLFANEPEWKAVHDS-ERKEIFRDAMELIEKREKENAKSIRRRNVQALADILEG---MEEITYKTTWAQAQRLLIENPAFANDSTLQSMDK 439
[Close]
BLAST of mRNA_H-elongata_contig16070.3892.1 vs. uniprot
Match: UPI001CF34C9E (pre-mRNA-processing factor 40 homolog B-like n=1 Tax=Acropora millepora TaxID=45264 RepID=UPI001CF34C9E)

HSP 1 Score: 101 bits (251), Expect = 9.190e-19
Identity = 108/308 (35.06%), Postives = 148/308 (48.05%), Query Frame = 1 
Query:  688 WSEHKAPDGRPYFYNSITRVSTYDKPNELKTPQE----------------------------------------KVAAVAATTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKIEEEKVTYETEEEKKEAFIEMLRECEVTSTTKWPETQKYCQSDPRWELLRK-GTRRQIWTEYQHKRRKEETEEKRAKAKKARMGFMKMLAQNTQIDGRSRWDDAERMLRDDPRFRAVPDSSDREDLFNEFVEALTKKEKE---DRRAAHKKATDRFVEFLEDDHVSLGITHRTIW 1479
            W+EHKAPDGR YFYN+ T+VST+ KPNELKTP E                                        ++        XXXXXXXXXXXXXXXXXX                               +E+++  YET+EE K+AF ++LRE EV S + W    +   SDPR+  L+K   ++Q + EY+ KR  EE EE+R KAKKAR      L  + ++    RW  A  M   +P + AV +  DR+D+F++ V  L KKE     ++RA ++K        L+  +    IT+RT W
Sbjct:  177 WTEHKAPDGRTYFYNTETKVSTWQKPNELKTPGEIQLDSCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLAELKELIKQEQEKEXXXXXXXXXXXXXXXXXXESDGKKADEAAKQDYPMASAVNVTEVPAVVAVEKKEYIYETKEEAKQAFKDLLREKEVPSNSSWDNAMRIIVSDPRYGALKKMNEKKQAFNEYKTKRANEEKEEQRQKAKKAREDLRSFLENHKKMHSSVRWRRAGEMFEGEPEWEAVHER-DRKDVFDDVVFFLAKKEXXXXXEQRAHNRKL------MLQVYNTMSSITYRTTW 477
[Close]
BLAST of mRNA_H-elongata_contig16070.3892.1 vs. uniprot
Match: W7TPS7_9STRA (Pre-mrna-processing factor 40 n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TPS7_9STRA)

HSP 1 Score: 100 bits (249), Expect = 1.640e-18
Identity = 61/141 (43.26%), Postives = 87/141 (61.70%), Query Frame = 1 
Query:  985 TYETEEEKKEAFIEMLRECEVTSTTKWPETQKYCQSDPRWELLRKGTRRQIWTEYQHKRRKEETEEKRAKAKKARMGFMKMLAQNTQIDGRSRWDDAERMLRDDPRFRAVPDS-SDREDLFNEFVEALTKKEKEDRRAAHK 1404
            ++ T EE   AF +ML +  V+ST KW +  K     P W  L+ G ++Q + EYQ KR KEE          AR GF+KMLA+  QID +SRW +AE +L++DPRF++   +  D+ED+F++FV  L KKEKE++R   K
Sbjct:  281 SFGTTEEAVAAFKQMLYDKGVSSTAKWADIPKMLSKQPVWSALKTGEKKQAFAEYQTKRMKEEXXXXXXXXXXARDGFLKMLAECVQIDSQSRWQEAEELLKEDPRFKSSELALHDKEDVFHDFVTELAKKEKEEKRLNQK 421
[Close]
BLAST of mRNA_H-elongata_contig16070.3892.1 vs. uniprot
Match: A0A200PSI5_9MAGN (WW domain n=1 Tax=Macleaya cordata TaxID=56857 RepID=A0A200PSI5_9MAGN)

HSP 1 Score: 99.4 bits (246), Expect = 4.280e-18
Identity = 66/180 (36.67%), Postives = 99/180 (55.00%), Query Frame = 1 
Query:  967 IEEEKVTYETEEEKKEAFIEMLRECEVTSTTKWPETQKYCQSDPRWELLRK-GTRRQIWTEYQHKRRKEETEEKRAKAKKARMGFMKMLAQNTQIDGRSRWDDAERMLRDDPRFRAVPDSSDREDLFNEFVEALTKKEKEDRRAAHKKATDRFVEFLEDDHVSLGITHRTIWRDVRDTIE 1503
            ++EE + Y  ++E K AF  +L    V S   W +  +   +D R+  L+  G R+Q + EY  +R+K+E EE+R K KKAR  F KML ++ ++   +RW  A  M  DD RF+AV  + DREDLF  ++  L KKEK   +  HK+    + +FLE       I   + WR V+D +E
Sbjct:  462 VDEETLIYANKQEAKNAFKALLESANVESDWNWDQAMRVIINDKRYGALKTLGERKQAFNEYLGQRKKQEAEERRIKQKKAREEFAKMLEESKELTSSTRWSKAVTMFEDDERFKAVERARDREDLFENYLVELQKKEKAKAQEEHKRNIMEYRQFLESCDF---IKPNSQWRKVQDRLE 638
[Close]
BLAST of mRNA_H-elongata_contig16070.3892.1 vs. uniprot
Match: A0A674PLR8_TAKRU (Uncharacterized protein n=1 Tax=Takifugu rubripes TaxID=31033 RepID=A0A674PLR8_TAKRU)

HSP 1 Score: 97.4 bits (241), Expect = 1.250e-17
Identity = 109/297 (36.70%), Postives = 169/297 (56.90%), Query Frame = 1 
Query:  619 PPMMPTMA-PPRLXXXXMFP--PTHGWSEHKAPDGRPYFYNSITRVSTYDKPNELKTPQEKVAAVAATTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKIEEEKVTYE--TEEEKKEAFIEMLRECEVTSTTKWPETQKYCQSDPRWELLRK-GTRRQIWTEYQHKRRKEETEEKRAKAKKARMGFMKMLAQNTQIDGRSRWDDAERMLRDDPRFRAVPDSSDREDLFNEFVEALTKKEKEDRRAAHKKATDRFVEFLEDDHVSLGITHRTIWRDVR 1491
            PPMMP M  PPR+    + P  P   W+EHK+ DG+ Y+YN+ T+ ST++KP++LK+P E++ +      XXXXXXXXXXXXXXXXXXXXXXXXXX                      + E +K TY+  T+EE K+AF E+L+E  V+S + W +  K   +DPR+  L K   ++Q +  Y+ +  KEE EE R K K+++  F + L  + ++   +R+  AE+M  +   +  VP+  DR +++ + +  L KKEKE  +   K+  +     L++      +T+RT W + +
Sbjct:   65 PPMMPAMMLPPRISAASVQPTGPKSVWTEHKSMDGKTYYYNTETKQSTWEKPDDLKSPAEQMLS-KCPXXXXXXXXXXXXXXXXXXXXXXXXXXXXLEDLEGKEMLSDYNDEITPKEERPELQKKTYKWNTKEEAKQAFKELLKEKGVSSNSSWEQAMKLIINDPRYSALPKLSEKKQAFNAYKVQTEKEEKEEARIKYKESKETFQRFLENHEKMTSTTRYKKAEQMFAEVEVWSCVPER-DRLEIYEDVLFYLAKKEKEQAKQLRKRNWEALKNILDN---MANVTYRTTWSEAQ 356
[Close]
BLAST of mRNA_H-elongata_contig16070.3892.1 vs. uniprot
Match: A0A2G9GF27_9LAMI (Spliceosomal protein FBP11/Splicing factor PRP40 n=1 Tax=Handroanthus impetiginosus TaxID=429701 RepID=A0A2G9GF27_9LAMI)

HSP 1 Score: 97.1 bits (240), Expect = 1.480e-17
Identity = 67/181 (37.02%), Postives = 100/181 (55.25%), Query Frame = 1 
Query:  964 KIEEEKVTYETEEEKKEAFIEMLRECEVTSTTKWPETQKYCQSDPRWELLRK-GTRRQIWTEYQHKRRKEETEEKRAKAKKARMGFMKMLAQNTQIDGRSRWDDAERMLRDDPRFRAVPDSSDREDLFNEFVEALTKKEKEDRRAAHKKATDRFVEFLEDDHVSLGITHRTIWRDVRDTIE 1503
            K+E+  + YE++EE K+AF  +L    V S   W +  +   +D R+  LR  G R+Q + EY  K++K+E EEKRA+ KKAR  F KML ++  +   +RW  A  M   D RF AV  + DREDLF++ +E L KKE+       K+    ++EFL+       I   + WR V+  +E
Sbjct:  197 KVEQGPLVYESKEEAKKAFKALLESANVGSDWNWDQAMRVIINDRRYGALRTLGERKQTFNEYVAKKKKQEAEEKRARQKKAREDFKKMLQESKDLTSSARWSKAITMFEKDERFHAVERAKDREDLFDDHLEELKKKERAKALEDRKRHKAEYLEFLKSCDF---IKANSQWRKVQHRLE 374
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig16070.3892.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G7T4_ECTSI6.920e-14267.60Protein binding protein, putative n=2 Tax=Ectocarp... [more]
A0A6S9FUY3_HETAK3.770e-3548.70Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A835ZHL9_9STRA4.790e-3342.57Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7C8ZF53_OPUST1.640e-1936.50Uncharacterized protein (Fragment) n=2 Tax=Opuntia... [more]
A0A158Q3R6_DRAME6.920e-1937.01Uncharacterized protein n=1 Tax=Dracunculus medine... [more]
UPI001CF34C9E9.190e-1935.06pre-mRNA-processing factor 40 homolog B-like n=1 T... [more]
W7TPS7_9STRA1.640e-1843.26Pre-mrna-processing factor 40 n=3 Tax=Monodopsidac... [more]
A0A200PSI5_9MAGN4.280e-1836.67WW domain n=1 Tax=Macleaya cordata TaxID=56857 Rep... [more]
A0A674PLR8_TAKRU1.250e-1736.70Uncharacterized protein n=1 Tax=Takifugu rubripes ... [more]
A0A2G9GF27_9LAMI1.480e-1737.02Spliceosomal protein FBP11/Splicing factor PRP40 n... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig16070contigH-elongata_contig16070:652..4742 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score440.7
Seed ortholog evalue9.8e-121
Seed eggNOG ortholog2880.D7G7T4
KEGG koko:K12821
KEGG Pathwayko03040,map03040
EggNOG free text desc.mRNA splicing, via spliceosome
EggNOG OGsCOG5104@1,KOG0152@2759
COG Functional cat.A
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03041
Hectar predicted targeting categoryother localisation
Exons6
Model size1590
Cds size1560
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929943.4295464-CDS-H-elongata_contig16070:651..8611622929943.4295464-CDS-H-elongata_contig16070:651..861Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16070 652..861 -
1691679217.512665-CDS-H-elongata_contig16070:651..8611691679217.512665-CDS-H-elongata_contig16070:651..861Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16070 652..861 -
1622929943.4465542-CDS-H-elongata_contig16070:1880..21001622929943.4465542-CDS-H-elongata_contig16070:1880..2100Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16070 1881..2100 -
1691679217.5227818-CDS-H-elongata_contig16070:1880..21001691679217.5227818-CDS-H-elongata_contig16070:1880..2100Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16070 1881..2100 -
1622929943.4618962-CDS-H-elongata_contig16070:2402..25001622929943.4618962-CDS-H-elongata_contig16070:2402..2500Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16070 2403..2500 -
1691679217.5308495-CDS-H-elongata_contig16070:2402..25001691679217.5308495-CDS-H-elongata_contig16070:2402..2500Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16070 2403..2500 -
1622929943.4724889-CDS-H-elongata_contig16070:2906..31221622929943.4724889-CDS-H-elongata_contig16070:2906..3122Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16070 2907..3122 -
1691679217.538712-CDS-H-elongata_contig16070:2906..31221691679217.538712-CDS-H-elongata_contig16070:2906..3122Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16070 2907..3122 -
1622929943.4824162-CDS-H-elongata_contig16070:3821..42811622929943.4824162-CDS-H-elongata_contig16070:3821..4281Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16070 3822..4281 -
1691679217.5470572-CDS-H-elongata_contig16070:3821..42811691679217.5470572-CDS-H-elongata_contig16070:3821..4281Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16070 3822..4281 -
1622929943.4936903-CDS-H-elongata_contig16070:4356..47121622929943.4936903-CDS-H-elongata_contig16070:4356..4712Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16070 4357..4712 -
1691679217.555091-CDS-H-elongata_contig16070:4356..47121691679217.555091-CDS-H-elongata_contig16070:4356..4712Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16070 4357..4712 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929943.5060282-UTR-H-elongata_contig16070:4712..47421622929943.5060282-UTR-H-elongata_contig16070:4712..4742Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig16070 4713..4742 -
1691679217.5633602-UTR-H-elongata_contig16070:4712..47421691679217.5633602-UTR-H-elongata_contig16070:4712..4742Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig16070 4713..4742 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig16070.3892.1prot_H-elongata_contig16070.3892.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig16070 652..4712 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig16070.3892.1

>prot_H-elongata_contig16070.3892.1 ID=prot_H-elongata_contig16070.3892.1|Name=mRNA_H-elongata_contig16070.3892.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=520bp
MVLPAWMTQGKVQPVAGALGADKAVSSGAVLQEQRAPGGLQDTALSRPTF
SQPPPVVTSKPPPGPPPGGPPVASPPVGPPEGAPPGAPPNRPPGRAGLGY
TPPPGSAPIQRAASSFSTPQAPQQTPAQPPQQQPPPHHHQQQQHHHVHHH
VPPQRAPYGMPLQQHPPQQHHMYHHGQQALMGGMPPMMMPMQQYGRPPMM
PTMAPPRLAPPPMFPPTHGWSEHKAPDGRPYFYNSITRVSTYDKPNELKT
PQEKVAAVAATTTAATPKATPIKPPTPEATVGGSTSPADSNGGGAGGNGV
GGSAGKAKGKKKIEEEKVTYETEEEKKEAFIEMLRECEVTSTTKWPETQK
YCQSDPRWELLRKGTRRQIWTEYQHKRRKEETEEKRAKAKKARMGFMKML
AQNTQIDGRSRWDDAERMLRDDPRFRAVPDSSDREDLFNEFVEALTKKEK
EDRRAAHKKATDRFVEFLEDDHVSLGITHRTIWRDVRDTIERKAPAETDV
LDDPDRRRLFDHLTVKLIKA
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mRNA from alignment at H-elongata_contig16070:652..4742-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig16070.3892.1 ID=mRNA_H-elongata_contig16070.3892.1|Name=mRNA_H-elongata_contig16070.3892.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=4091bp|location=Sequence derived from alignment at H-elongata_contig16070:652..4742- (Himanthalia elongata Himel1 dioecious)
CAGGCCGGCCGTGGCGGACGTGGCAGGGGCATGGTACTTCCGGCGTGGAT
GACTCAAGGTAAGGTCCAACCTGTAGCAGGCGCTCTTGGCGCGGATAAAG
CGGTGTCCTCTGGAGCCGTGCTGCAAGAGCAGCGCGCTCCTGGTGGGCTT
CAGGATACCGCGCTTTCGCGGCCGACATTTTCCCAGCCACCACCCGTGGT
GACATCCAAACCGCCCCCGGGCCCCCCTCCCGGAGGACCTCCTGTGGCTT
CTCCACCGGTGGGTCCGCCTGAAGGAGCACCGCCTGGTGCTCCACCCAAT
CGGCCGCCGGGAAGAGCCGGCTTGGGGTACACCCCGCCTCCAGGGTCCGC
ACCGATACAACGTGCAGCTTCGAGTTTCAGTACCCCGTCGGCTTCTTCGG
GCCAGCAAAATCAGCAGCAATCGCCGCAAGAGCAACATCATAATCAAACA
CCCCAGCATAGCCAGGCGCCGCAACAAACACCAGCACAGCCGCCGCAGCA
GCAGCCACCCCCGCACCATCACCAGCAGCAGCAACATCACCACGTCCACC
ACCACGTTCCACCTCAGAGAGCCCCGTACGGCATGCCCTTGCAGCAACAT
CCTCCACAGCAGCACCATATGTATCACCACGGGCAGCAGGCTCTCATGGG
AGGCATGCCCCCCATGATGATGCCGATGCAGCAATACGGCCGTCCGCCAA
TGATGCCGACAATGGCACCGCCGCGATTGGCTCCCCCTCCGATGTTCCCG
CCTACGCATGGTTGGTCGGAGCACAAGGCGCCCGACGGCCGACCGTACTT
CTACAATTCTATTACGCGCGTCAGCACCTACGACAAGCCTAACGAACTAA
AGACGCCACAGGAGAAGGTCGCCGCTGTGGCAGCCACAACCACCGCGGCA
ACCCCAAAGGCTACCCCGATAGTGATCGCGGCCGCCGCCACAGTGCCCAC
CCTAAAGACCTCGGTCGTTGCCCCGGGGACACCAACGACCGGCCCTGCCG
CTGTCAATGTCGCCCCTGCCATCACCATTGCCACTACTACTACTACTACG
AGTGTCGCTGACATTGCTACCAGCGTTACGGCTGTGGCTACCCCTGTACC
TGCTACTGCTGTGACTGCTGCGACTCCGACTCCGGCTCCGGCGGCCTCCG
CCCCGGCTGTCGTGGCCCCACCCGAGGTGGCTAAGGCCCCGGTGCCTGCT
CCCCCGGTGGTTATTCCCAAGTGCAAATGGAAGGCATATGACGGGCCAAG
CGGACGGAAATACTATAGCGACGGAAAGACCTCGGTGTGGGACAAGCCGC
AGGAGCTTAAGGACTATGAGGTAGCTGTCGCTGCCAAGGAGGCGGCCGCC
AAGCTTAATGCCGCGGCCGCCGCCCAAGCCGCGGCTGCGGCCTCCGCCGC
GCCGCCGGCAGCTTCGACTGAAGAAAACGACTCCTCTAGTCATGCGCCGG
GCGAGAGCGAGGCTTCCGCCGTAGCCGCAATTGCTGATGTGACTGGCACG
GCCGGAGGTAGTCCATCTAATATTACTGGACCGAGCGGCGAAGAAGGCGT
AAAGGTTGAGGTCGCGCCAAAAGTGGAGCTAGTTGGATTTGGCGGGGCCA
ACGGTGTGAGACTGTTGGAGAAGCCGCCAACTCCCGAGGCCACAGTCGGG
GGCTCAACTTCCCCTGCGGACTCAAACGGTGGTGGCGCTGGTGGAAACGG
CGTGGGAGGATCTGCTGGGAAAGCAAAGGGTAAAAAAAAAATTGAGGAAG
AAAAGGTGACGTACGAGACAGAAGAAGAAAAGAAAGAAGCGTTCATCGAG
ATGCTTAGAGAGTGCGAGGTCACCAGCACTACAAAGGTGAGAGAGAGAGC
CCTTTTGGTTAGGGGGGGGAAGAGGGAAAGAGAAGAGGGGTGAGGGGGCT
ACAACATTTTTTTTAAAAGACCATCATGCATGTGATCCTATACTGTATAC
GATGAAAATCGAAGTGGTTTTCTTTACTCTTTCTTGCACATAGTAATAGT
ATTTTTTCCGGTGAGGATTTTTTTGGTTAGACGGCTCGATCCGAGTCAAT
CAAGATGGCGAACGGTTTAGTGGCACGGGCGGATGTCAATGCTCTCTTGC
CTAGCTTCGATGTTATCTCGCCTAGCGTCGATCATTCCTTTTGCTATGGC
GGTACACCTGGAGCACAACCTGCAGCACCGATTTAACATGCCCCTCCCCC
GTCTCCTATTATCTGTTTCCGCTATGGATTGCCACGGTCTAGTGGCCGGA
GACACAGAAGTACTGCCAATCCGACCCTCGCTGGGAGCTCTTGAGGAAGG
GTACCCGACGCCAGATTTGGACTGAATATCAGCACAAGAGGTACGATGCC
GATGGTTTGCTCTTTTCCCTTCCATAGTGGCGTAATGCGTTAAAGTTAAA
TTAAAAATAAACCACGCTGCGGTTGATGTTTTTCTGCGTCAATTTCGTGC
GGTTTAACAAGTTTTGTCTTCTATTGTTTGATGCGTCGTAGATCCTTTGA
TTTGTTGTTTATCCTACATTGACGAGAACACAAACAGAGTACTGTCTCGA
GGATTTCGCTATAAAGTGGCGTTTTTATTCCCCCCGCTACCGTGTTTCTT
CCAACCTCCAATCACTTACATGTGGCATGTAATTTAACACAGGCGCAAAG
AAGAAACGGAGGAAAAACGCGCCAAGGCAAAGAAGGCGCGTATGGGTTTT
ATGAAGATGCTTGCTCAAAATACCCAGATCGACGGACGCTCGCGGTGGGA
CGACGCGGAGCGCATGCTGCGCGACGACCCCCGCTTTAGGGCGGTGCCGG
ATTCTTCGGACCGGGAAGACCTTTTTAACGAGTTCGTGGAAGCCTTGACC
AAGAAGGAGAAGGTAACCAACCGCACTTGACGCTTTTACCTCGTATTATT
ATCGGAACAATAAAGGATGAACGCCTCCCTTCAATGCACCGTAGCTGGAT
TTTTTTCCGCAAGTTTTCCAGGTGATGACGATCACTATCACTGTCACTGT
TTCTTACCTCACGTCTATTGATGTCCTGTACGAACTTATCCCCAGGGCGG
GTTTTTCGCTTGCCGGTGTCATGCTGCCTTTCTATGGCGTTACGGTTTTT
CTTTGTCTTACTTTTTTTCGTTGCTTCCATTGAACCCGTCGCTCTTCGCT
CAATCGTTCTACGATAGGCCCGCGTCCCGATAGCCACATGTAGTTCGTTA
CGAACCTAGAGTGTTCTCTTTTTTGTGTTTCTTTTGTGTTTCTTTTGTGT
TTCTTTGGAGATGCCGCTTTTCCGAGTATTTGTATTGTACACCATTATTG
TCGTTTCCTTGGTGTATTGGAGAGCACCTTGAACTTTTTTTTCCTTCCGG
GCGGTGTTTTTTCTACCTTGTGACCACGGGCTGGATTTTGACATCAGCTT
ATGCGAGAATTCAATCAATCAATCAATCAAAATATAAAACAACTGGAAAT
GAATTTTATCGTCGGCGGTACCCAATTATGTCAGGATACTTTAATACTGT
TATCATGATAAGAGCCATCATGGTAATAGTGATCCTTCGAACATTCACGC
CTTCTTAGCACCATGAGAGTTAAATTTTGTTGCGGGGGTTCACTTCCTAA
CTCTACCTCCTAGTTTTTGTTCTTTTTCTTCCCGTTTTTCTCCTGCGGTG
ATGTTCCTGCTCCGAGTGCACATAATTTTCAAGTAGAATGTGATATGTTG
TACTTGGAGAGTGTATTAACAGTATAAACAAAGCCTTTACAAGGTACACT
CTTCAATGTTACTTTAAATATTGATATAGCAGCTTCTGTCAATAATATAT
ATATATATATATATGTGCTCATCGAACGCCGCTCCTGCAACTCACACCCC
GTACCCTGCCCCCTGTCCCCTGTCCCCTCAGGAGGACCGCCGTGCTGCTC
ATAAGAAAGCCACCGATAGGTTCGTCGAGTTCCTCGAAGATGATCACGTA
TCCCTGGGGATCACGCATCGCACGATCTGGAGGGACGTGAGGGACACCAT
CGAGCGCAAGGCTCCGGCGGAGACGGATGTCCTGGACGATCCCGACCGGC
GCAGACTGTTCGATCATCTGACGGTCAAGCTGATTAAGGCA
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Coding sequence (CDS) from alignment at H-elongata_contig16070:652..4742-

>mRNA_H-elongata_contig16070.3892.1 ID=mRNA_H-elongata_contig16070.3892.1|Name=mRNA_H-elongata_contig16070.3892.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=3120bp|location=Sequence derived from alignment at H-elongata_contig16070:652..4742- (Himanthalia elongata Himel1 dioecious)
ATGGTACTTCCGGCGTGGATGACTCAAGGTAAGGTCCAACCTGTAGCAGG
CGCTCTTGGCGCGGATAAAGCGGTGTCCTCTGGAGCCGTGCTGCAAGAGC
AGCGCGCTCCTGGTGGGCTTCAGGATACCGCGCTTTCGCGGCCGACATTT
TCCCAGCCACCACCCGTGGTGACATCCAAACCGCCCCCGGGCCCCCCTCC
CGGAGGACCTCCTGTGGCTTCTCCACCGGTGGGTCCGCCTGAAGGAGCAC
CGCCTGGTGCTCCACCCAATCGGCCGCCGGGAAGAGCCGGCTTGGGGTAC
ACCCCGCCTCCAGGGTCCGCACCGATACAACGTGCAGCTTCGAGTTTCAG
TACCCCATGGTACTTCCGGCGTGGATGACTCAAGGTAAGGTCCAACCTGT
AGCAGGCGCTCTTGGCGCGGATAAAGCGGTGTCCTCTGGAGCCGTGCTGC
AAGAGCAGCGCGCTCCTGGTGGGCTTCAGGATACCGCGCTTTCGCGGCCG
ACATTTTCCCAGCCACCACCCGTGGTGACATCCAAACCGCCCCCGGGCCC
CCCTCCCGGAGGACCTCCTGTGGCTTCTCCACCGGTGGGTCCGCCTGAAG
GAGCACCGCCTGGTGCTCCACCCAATCGGCCGCCGGGAAGAGCCGGCTTG
GGGTACACCCCGCCTCCAGGGTCCGCACCGATACAACGTGCAGCTTCGAG
TTTCAGTACCCCCCAGGCGCCGCAACAAACACCAGCACAGCCGCCGCAGC
AGCAGCCACCCCCGCACCATCACCAGCAGCAGCAACATCACCACGTCCAC
CACCACGTTCCACCTCAGAGAGCCCCGTACGGCATGCCCTTGCAGCAACA
TCCTCCACAGCAGCACCATATGTATCACCACGGGCAGCAGGCTCTCATGG
GAGGCATGCCCCCCATGATGATGCCGATGCAGCAATACGGCCGTCCGCCA
ATGATGCCGACAATGGCACCGCCGCGATTGGCTCCCCCTCCGATGTTCCC
GCCTACGCATGGTTGGTCGGAGCACAAGGCGCCCGACGGCCGACCGTACT
TCTACAATTCTATTACGCGCGTCAGCACCTACGACAAGCCTAACGAACTA
AAGACGCCACAGGAGAAGGTCGCCGCTGTGGCAGCCACAACCACCGCGGC
AACCCCAAAGGCTACCCCGATACCAGGCGCCGCAACAAACACCAGCACAG
CCGCCGCAGCAGCAGCCACCCCCGCACCATCACCAGCAGCAGCAACATCA
CCACGTCCACCACCACGTTCCACCTCAGAGAGCCCCGTACGGCATGCCCT
TGCAGCAACATCCTCCACAGCAGCACCATATGTATCACCACGGGCAGCAG
GCTCTCATGGGAGGCATGCCCCCCATGATGATGCCGATGCAGCAATACGG
CCGTCCGCCAATGATGCCGACAATGGCACCGCCGCGATTGGCTCCCCCTC
CGATGTTCCCGCCTACGCATGGTTGGTCGGAGCACAAGGCGCCCGACGGC
CGACCGTACTTCTACAATTCTATTACGCGCGTCAGCACCTACGACAAGCC
TAACGAACTAAAGACGCCACAGGAGAAGGTCGCCGCTGTGGCAGCCACAA
CCACCGCGGCAACCCCAAAGGCTACCCCGATAAAGCCGCCAACTCCCGAG
GCCACAGTCGGGGGCTCAACTTCCCCTGCGGACTCAAACGGTGGTGGCGC
TGGTGGAAACGGCGTGGGAGGATCTGCTGGGAAAGCAAAGGGTAAAAAAA
AAATTGAGGAAGAAAAGGTGACGTACGAGACAGAAGAAGAAAAGAAAGAA
GCGTTCATCGAGATGCTTAGAGAGTGCGAGGTCACCAGCACTACAAAGAA
GCCGCCAACTCCCGAGGCCACAGTCGGGGGCTCAACTTCCCCTGCGGACT
CAAACGGTGGTGGCGCTGGTGGAAACGGCGTGGGAGGATCTGCTGGGAAA
GCAAAGGGTAAAAAAAAAATTGAGGAAGAAAAGGTGACGTACGAGACAGA
AGAAGAAAAGAAAGAAGCGTTCATCGAGATGCTTAGAGAGTGCGAGGTCA
CCAGCACTACAAAGTGGCCGGAGACACAGAAGTACTGCCAATCCGACCCT
CGCTGGGAGCTCTTGAGGAAGGGTACCCGACGCCAGATTTGGACTGAATA
TCAGCACAAGAGTGGCCGGAGACACAGAAGTACTGCCAATCCGACCCTCG
CTGGGAGCTCTTGAGGAAGGGTACCCGACGCCAGATTTGGACTGAATATC
AGCACAAGAGGCGCAAAGAAGAAACGGAGGAAAAACGCGCCAAGGCAAAG
AAGGCGCGTATGGGTTTTATGAAGATGCTTGCTCAAAATACCCAGATCGA
CGGACGCTCGCGGTGGGACGACGCGGAGCGCATGCTGCGCGACGACCCCC
GCTTTAGGGCGGTGCCGGATTCTTCGGACCGGGAAGACCTTTTTAACGAG
TTCGTGGAAGCCTTGACCAAGAAGGAGAAGGCGCAAAGAAGAAACGGAGG
AAAAACGCGCCAAGGCAAAGAAGGCGCGTATGGGTTTTATGAAGATGCTT
GCTCAAAATACCCAGATCGACGGACGCTCGCGGTGGGACGACGCGGAGCG
CATGCTGCGCGACGACCCCCGCTTTAGGGCGGTGCCGGATTCTTCGGACC
GGGAAGACCTTTTTAACGAGTTCGTGGAAGCCTTGACCAAGAAGGAGAAG
GAGGACCGCCGTGCTGCTCATAAGAAAGCCACCGATAGGTTCGTCGAGTT
CCTCGAAGATGATCACGTATCCCTGGGGATCACGCATCGCACGATCTGGA
GGGACGTGAGGGACACCATCGAGCGCAAGGCTCCGGCGGAGACGGATGTC
CTGGACGATCCCGACCGGCGCAGACTGTTCGATCATCTGACGGTCAAGCT
GATTAAGGCAGAGGACCGCCGTGCTGCTCATAAGAAAGCCACCGATAGGT
TCGTCGAGTTCCTCGAAGATGATCACGTATCCCTGGGGATCACGCATCGC
ACGATCTGGAGGGACGTGAGGGACACCATCGAGCGCAAGGCTCCGGCGGA
GACGGATGTCCTGGACGATCCCGACCGGCGCAGACTGTTCGATCATCTGA
CGGTCAAGCTGATTAAGGCA
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