mRNA_H-elongata_contig16069.3889.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig16069.3889.1 vs. uniprot
Match: B7ZGN7_9PHAE (3-isopropylmalate dehydratase (Fragment) n=1 Tax=Laminaria digitata TaxID=80365 RepID=B7ZGN7_9PHAE) HSP 1 Score: 350 bits (897), Expect = 3.770e-120 Identity = 175/209 (83.73%), Postives = 191/209 (91.39%), Query Frame = 1
Query: 10 SSVSRQATAVDLSDARVKEMPQNRDRPDKYAGACFVVKDNIDTDQIIPAEYLTLVPSKADEYEKLGSYAMIGLPGVYEKRFVDEGAMKTKYPIMIAGANFGCGSSREHAPIAMGAAGVRVVVAESYARIFFRNSIATGELYPYECKERLVDLFSTGDEVSVDLSTDTLTNHATGKEYSLSPLGDAGPVINAGGLFPYAIQTGMIKKQDD 636
SSV+RQA A D D R KEMP+ R+RP KY GACFVVKDNIDTDQIIPAEYLTLVPSKADEYEKLGSYAMIGLP VY+ RFV+EG+MKTKYPIMIAG NFGCGSSREHAPIA+GAAG RVVVAESYARIFFRNSIATGELYPYEC+ERLVD+ TGDE++VDLSTDTLTNHA+GKEY L+PLGDA PVINAGGLFP+AIQTGMIKK ++
Sbjct: 41 SSVARQAAASDDMDPREKEMPKFRERPTKYTGACFVVKDNIDTDQIIPAEYLTLVPSKADEYEKLGSYAMIGLPSVYKTRFVEEGSMKTKYPIMIAGDNFGCGSSREHAPIALGAAGARVVVAESYARIFFRNSIATGELYPYECQERLVDIIKTGDELTVDLSTDTLTNHASGKEYPLTPLGDAAPVINAGGLFPFAIQTGMIKKLEE 249
BLAST of mRNA_H-elongata_contig16069.3889.1 vs. uniprot
Match: A0A6H5JPR9_9PHAE (Aconitase_C domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JPR9_9PHAE) HSP 1 Score: 342 bits (878), Expect = 3.760e-117 Identity = 167/204 (81.86%), Postives = 185/204 (90.69%), Query Frame = 1
Query: 25 QATAVDLSDARVKEMPQNRDRPDKYAGACFVVKDNIDTDQIIPAEYLTLVPSKADEYEKLGSYAMIGLPGVYEKRFVDEGAMKTKYPIMIAGANFGCGSSREHAPIAMGAAGVRVVVAESYARIFFRNSIATGELYPYECKERLVDLFSTGDEVSVDLSTDTLTNHATGKEYSLSPLGDAGPVINAGGLFPYAIQTGMIKKQDD 636
+A A + D RVKEMP+NRDRPDKY G CFVVKDNIDTDQIIPAEYLTLVPS A+EYEKLGSYAMIGLP VY R+V+EG+M T+YPI+IAG NFGCGSSREHAPIA+GAAG RVVVAESYARIFFRNSIATGELYPYEC+ERLVD F+TGD+V+VDL+TDTL NH TGKEY L+PLGDAGPVINAGGLFPYAI+TGMIKK D+
Sbjct: 53 EADAAAIDDPRVKEMPKNRDRPDKYTGQCFVVKDNIDTDQIIPAEYLTLVPSNANEYEKLGSYAMIGLPDVYTTRYVEEGSMATRYPIIIAGDNFGCGSSREHAPIALGAAGARVVVAESYARIFFRNSIATGELYPYECQERLVDAFTTGDDVTVDLTTDTLINHTTGKEYPLNPLGDAGPVINAGGLFPYAIKTGMIKKMDE 256
BLAST of mRNA_H-elongata_contig16069.3889.1 vs. uniprot
Match: D8SLS4_SELML (Aconitase_C domain-containing protein n=3 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8SLS4_SELML) HSP 1 Score: 258 bits (658), Expect = 1.060e-84 Identity = 125/176 (71.02%), Postives = 149/176 (84.66%), Query Frame = 1
Query: 94 KYAGACFVVKDNIDTDQIIPAEYLTLVPSKADEYEKLGSYAMIGLPGVYEKRFVDEGAMKTKYPIMIAGANFGCGSSREHAPIAMGAAGVRVVVAESYARIFFRNSIATGELYPYECKERLVDLFSTGDEVSVDLSTDTLTNHATGKEYSLSPLGDAGPVINAGGLFPYAIQTGMI 621
+ +G CFVV+DNIDTDQIIPAEYLTLVPSK DEYEKLGSYAM GLP Y + F++ G KTKY I+IAG+NFGCGSSREHAP+A+GA+G++VVVAESYARIFFRNS+ATGE+YP EC+ R+ D F GD+V+VD+ D + NH+TGKEY+L PLGDA PVI AGG+F YA QTGMI
Sbjct: 9 QISGKCFVVRDNIDTDQIIPAEYLTLVPSKPDEYEKLGSYAMAGLPPHYGQ-FMEPGKSKTKYSIIIAGSNFGCGSSREHAPVALGASGIQVVVAESYARIFFRNSVATGEMYPVECEARICDEFHNGDDVTVDMERDVVVNHSTGKEYALKPLGDAAPVIEAGGIFAYARQTGMI 183
BLAST of mRNA_H-elongata_contig16069.3889.1 vs. uniprot
Match: A0A7N0U1F4_KALFE (Aconitase_C domain-containing protein n=2 Tax=Kalanchoe fedtschenkoi TaxID=63787 RepID=A0A7N0U1F4_KALFE) HSP 1 Score: 259 bits (663), Expect = 2.240e-84 Identity = 125/178 (70.22%), Postives = 149/178 (83.71%), Query Frame = 1
Query: 97 YAGACFVVKDNIDTDQIIPAEYLTLVPSKADEYEKLGSYAMIGLPGVYEKRFVDEGAMKTKYPIMIAGANFGCGSSREHAPIAMGAAGVRVVVAESYARIFFRNSIATGELYPYECKERLVDLFSTGDEVSVDLSTDTLTNHATGKEYSLSPLGDAGPVINAGGLFPYAIQTGMIKKQ 630
+ G C+VVKDNIDTDQIIPAEYLTLVPSK DEY+KLGSYAMIGLP Y RF++ G +TKY I+IAG NFGCGSSREHAP+A+GAAGV+ VVAESYARIFFRNS+ATGE+YP EC+ R+ D STGD V+++L + L NH+TGKE++L P+GDAGPVI AGG+F YA +TGMI Q
Sbjct: 82 FHGVCYVVKDNIDTDQIIPAEYLTLVPSKPDEYKKLGSYAMIGLPESYRTRFIEPGESETKYSIVIAGDNFGCGSSREHAPVALGAAGVKAVVAESYARIFFRNSVATGEIYPLECEGRICDECSTGDVVTIELKENKLINHSTGKEFALKPIGDAGPVIEAGGIFAYARKTGMIPAQ 259
BLAST of mRNA_H-elongata_contig16069.3889.1 vs. uniprot
Match: A0A7J7Q700_9CHLO (Small subunit of isopropylmalate dehydratase n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7Q700_9CHLO) HSP 1 Score: 256 bits (653), Expect = 1.510e-83 Identity = 133/207 (64.25%), Postives = 160/207 (77.29%), Query Frame = 1
Query: 4 QASSVSRQATAVDLSDARVKEMPQNRDRPDKYAGACFVVKDNIDTDQIIPAEYLTLVPSKADEYEKLGSYAMIGLPGVYEKRFVDEGAMKTKYPIMIAGANFGCGSSREHAPIAMGAAGVRVVVAESYARIFFRNSIATGELYPYECKERLVDLFSTGDEVSVDLSTDTLTNHATGKEYSLSPLGDAGPVINAGGLFPYAIQTGMIK 624
Q +++S ++ AV L +A+ + P D P G CFV KDNIDTDQIIPAEYLTLVPSK DEYEKLGSYA+IGLP Y +FV+EG MKTKY ++I G NFGCGSSREHAP+A+GAAG +VVVAESYARIFFRN ++TGELYP E R+ + +TG++V+VD+ + L NH TGKEY L LGDAGPVI+AGGLF YA Q GMIK
Sbjct: 9 QRAALSSRSRAV-LVEAKTTKAP---DAPRIVRGTCFVTKDNIDTDQIIPAEYLTLVPSKPDEYEKLGSYALIGLPDEYTTKFVEEGEMKTKYKVIIGGQNFGCGSSREHAPVALGAAGSQVVVAESYARIFFRNCMSTGELYPVETDVRVCEELNTGEDVTVDMEANVLINHTTGKEYQLKALGDAGPVIDAGGLFDYARQQGMIK 211
BLAST of mRNA_H-elongata_contig16069.3889.1 vs. uniprot
Match: UPI002009A417 (3-isopropylmalate dehydratase small subunit 1-like n=1 Tax=Salvia hispanica TaxID=49212 RepID=UPI002009A417) HSP 1 Score: 254 bits (648), Expect = 3.510e-83 Identity = 124/179 (69.27%), Postives = 143/179 (79.89%), Query Frame = 1
Query: 97 YAGACFVVKDNIDTDQIIPAEYLTLVPSKADEYEKLGSYAMIGLPGVYEKRFVDEGAMKTKYPIMIAGANFGCGSSREHAPIAMGAAGVRVVVAESYARIFFRNSIATGELYPYECKERLVDLFSTGDEVSVDLSTDTLTNHATGKEYSLSPLGDAGPVINAGGLFPYAIQTGMIKKQD 633
+ G C+VV DNIDTDQIIPAEYLTLVPS DEYEKLGSYA+IGLP YE RFV+ GA KTKY I+I G NFGCGSSREHAP+A+GAAGV VVAESYARIFFRNS+ATGE+YP E + RL + +TGD V+++L L NH TGKEY L P+GDAGPVI AGG+F YA + GMI +D
Sbjct: 8 FHGLCYVVGDNIDTDQIIPAEYLTLVPSNPDEYEKLGSYALIGLPSTYESRFVEPGATKTKYSIVIGGDNFGCGSSREHAPVALGAAGVAAVVAESYARIFFRNSVATGEIYPLESEGRLCEECTTGDVVTIELGESKLINHTTGKEYKLKPIGDAGPVIEAGGIFAYARKAGMIPSRD 186
BLAST of mRNA_H-elongata_contig16069.3889.1 vs. uniprot
Match: A0A4D9BDJ2_SALSN (3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit n=2 Tax=Salvia splendens TaxID=180675 RepID=A0A4D9BDJ2_SALSN) HSP 1 Score: 255 bits (651), Expect = 1.140e-82 Identity = 125/179 (69.83%), Postives = 143/179 (79.89%), Query Frame = 1
Query: 97 YAGACFVVKDNIDTDQIIPAEYLTLVPSKADEYEKLGSYAMIGLPGVYEKRFVDEGAMKTKYPIMIAGANFGCGSSREHAPIAMGAAGVRVVVAESYARIFFRNSIATGELYPYECKERLVDLFSTGDEVSVDLSTDTLTNHATGKEYSLSPLGDAGPVINAGGLFPYAIQTGMIKKQD 633
+ G C+VV DNIDTDQIIPAEYLTLVPS DEYEKLGSYA+IGLP YE RFV+ GA KTKY I+I G NFGCGSSREHAP+A+GAAGV VVAESYARIFFRNS+ATGE+YP E + RL D +TGD V+++L L NH TGKEY L P+GDAGPVI AGG+F YA + GMI +D
Sbjct: 75 FHGLCYVVGDNIDTDQIIPAEYLTLVPSNPDEYEKLGSYALIGLPSTYEARFVEPGATKTKYSIVIGGDNFGCGSSREHAPVALGAAGVAAVVAESYARIFFRNSVATGEIYPLESEGRLCDECTTGDVVTIELGESKLINHTTGKEYKLKPIGDAGPVIEAGGIFAYARKAGMIPSRD 253
BLAST of mRNA_H-elongata_contig16069.3889.1 vs. uniprot
Match: A0A1Y1I3V1_KLENI (3-isopropylmalate dehydratase n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1I3V1_KLENI) HSP 1 Score: 254 bits (648), Expect = 1.930e-82 Identity = 127/174 (72.99%), Postives = 145/174 (83.33%), Query Frame = 1
Query: 103 GACFVVKDNIDTDQIIPAEYLTLVPSKADEYEKLGSYAMIGLPGVYEKRFVDEGAMKTKYPIMIAGANFGCGSSREHAPIAMGAAGVRVVVAESYARIFFRNSIATGELYPYECKERLVDLFSTGDEVSVDLSTDTLTNHATGKEYSLSPLGDAGPVINAGGLFPYAIQTGMIK 624
G FVV DNIDTDQIIPAEYLTLVPSK +EYEKLGSYAM GLP Y F++EG MKTKYPIMI G N+GCGSSREHAP+A+GAAG++ VVAESYARIFFRNS+ATGELYP E RL + TGDEV+VD+ D LT+H TGK+Y+L P+G+AGPVI+AGGLF YA QTGMIK
Sbjct: 63 GPVFVVDDNIDTDQIIPAEYLTLVPSKPEEYEKLGSYAMAGLPKGYGI-FIEEGEMKTKYPIMIGGKNYGCGSSREHAPVALGAAGLKAVVAESYARIFFRNSVATGELYPVEIDTRLCEELKTGDEVTVDMENDVLTHHGTGKQYNLKPIGEAGPVIDAGGLFNYARQTGMIK 235
BLAST of mRNA_H-elongata_contig16069.3889.1 vs. uniprot
Match: A0A836BR91_9CHLO (Aconitase_C domain-containing protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A836BR91_9CHLO) HSP 1 Score: 252 bits (643), Expect = 4.990e-82 Identity = 130/203 (64.04%), Postives = 155/203 (76.35%), Query Frame = 1
Query: 22 RQATAVDLSDARV-KEMPQNRDRPDKYAGACFVVKDNIDTDQIIPAEYLTLVPSKADEYEKLGSYAMIGLPGV-YEKRFVDEGAMKTKYPIMIAGANFGCGSSREHAPIAMGAAGVRVVVAESYARIFFRNSIATGELYPYECKERLVDLFSTGDEVSVDLSTDTLTNHATGKEYSLSPLGDAGPVINAGGLFPYAIQTGMIK 624
RQA S RV ++ + + P G CFV KDNIDTDQIIPAEYLTLVPSK DEYEKLGSYA+IGLP V Y R+V++G+MKT+YP++I G NFGCGSSREHAP+A+GAAG +V VAESYARIFFRN IATGELYP E RL D+ TG EV+VD+ + LT+H+TGK Y L +GDAGPVI+AGG+F +A GMIK
Sbjct: 10 RQARPARRSTVRVCAKVDKKPNEPRIIRGKCFVTKDNIDTDQIIPAEYLTLVPSKPDEYEKLGSYALIGLPDVEYPTRYVNDGSMKTEYPVIIGGQNFGCGSSREHAPVALGAAGAKVCVAESYARIFFRNCIATGELYPCETDVRLCDVLKTGSEVTVDMEANVLTDHSTGKTYKLQDIGDAGPVIDAGGIFEFARAAGMIK 212
BLAST of mRNA_H-elongata_contig16069.3889.1 vs. uniprot
Match: A0A371HP06_MUCPR (3-isopropylmalate dehydratase small subunit 3 (Fragment) n=1 Tax=Mucuna pruriens TaxID=157652 RepID=A0A371HP06_MUCPR) HSP 1 Score: 253 bits (647), Expect = 8.030e-82 Identity = 124/189 (65.61%), Postives = 146/189 (77.25%), Query Frame = 1
Query: 55 RVKEMPQNRDRPDKYAGACFVVKDNIDTDQIIPAEYLTLVPSKADEYEKLGSYAMIGLPGVYEKRFVDEGAMKTKYPIMIAGANFGCGSSREHAPIAMGAAGVRVVVAESYARIFFRNSIATGELYPYECKERLVDLFSTGDEVSVDLSTDTLTNHATGKEYSLSPLGDAGPVINAGGLFPYAIQTGMI 621
R+ + + + G C+VV DNIDTDQIIPAEYLTLVPSK DEYEKLGSYA+IGLP Y RF+D G KTKYPI+IAGANFGCGSSREHAP+A+GA+G VVAESYARIFFRNS+ATGE+YP E + RL + TGD V+++L L NH +GKEY L P+GDAGPVI AGG+F YA +TGMI
Sbjct: 58 RIPRVQASASSSSSFHGLCYVVGDNIDTDQIIPAEYLTLVPSKPDEYEKLGSYALIGLPASYATRFIDPGETKTKYPIVIAGANFGCGSSREHAPVALGASGAAAVVAESYARIFFRNSVATGEVYPLESESRLCEECRTGDLVTIELGESKLINHTSGKEYRLKPIGDAGPVIEAGGIFAYARKTGMI 246 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig16069.3889.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig16069.3889.1 >prot_H-elongata_contig16069.3889.1 ID=prot_H-elongata_contig16069.3889.1|Name=mRNA_H-elongata_contig16069.3889.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=213bp GQASSVSRQATAVDLSDARVKEMPQNRDRPDKYAGACFVVKDNIDTDQIIback to top mRNA from alignment at H-elongata_contig16069:2791..5394- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig16069.3889.1 ID=mRNA_H-elongata_contig16069.3889.1|Name=mRNA_H-elongata_contig16069.3889.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2604bp|location=Sequence derived from alignment at H-elongata_contig16069:2791..5394- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig16069:2791..5394- >mRNA_H-elongata_contig16069.3889.1 ID=mRNA_H-elongata_contig16069.3889.1|Name=mRNA_H-elongata_contig16069.3889.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1278bp|location=Sequence derived from alignment at H-elongata_contig16069:2791..5394- (Himanthalia elongata Himel1 dioecious)back to top |