mRNA_H-elongata_contig16069.3888.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig16069.3888.1
Unique NamemRNA_H-elongata_contig16069.3888.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig16069.3888.1 vs. uniprot
Match: D8LRK9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRK9_ECTSI)

HSP 1 Score: 55.1 bits (131), Expect = 6.480e-6
Identity = 34/64 (53.12%), Postives = 42/64 (65.62%), Query Frame = 3 
Query:  144 QGYRQAESRFSSLLAKGNAEAAASRRTAG-----IPGPWEPVAREGEGPHRGIPA---QESGQR 311
            QG+++A+ RF+SLLAKGNAEA++   TAG     IPGPWEPVA   EG   G  A    + GQR
Sbjct:  112 QGFQEADRRFASLLAKGNAEASSGGGTAGVVRAGIPGPWEPVAGPTEGQQYGRAAGHQDDPGQR 175
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig16069.3888.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LRK9_ECTSI6.480e-653.13Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig16069contigH-elongata_contig16069:200..1169 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-12_000180.1
Exons3
Model size516
Cds size234
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig16069.3888.1prot_H-elongata_contig16069.3888.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig16069 481..967 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929942.8549578-UTR-H-elongata_contig16069:199..2491622929942.8549578-UTR-H-elongata_contig16069:199..249Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig16069 200..249 +
1691679217.216883-UTR-H-elongata_contig16069:199..2491691679217.216883-UTR-H-elongata_contig16069:199..249Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig16069 200..249 +
1622929942.8740406-UTR-H-elongata_contig16069:450..4801622929942.8740406-UTR-H-elongata_contig16069:450..480Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig16069 451..480 +
1691679217.2241137-UTR-H-elongata_contig16069:450..4801691679217.2241137-UTR-H-elongata_contig16069:450..480Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig16069 451..480 +
1622929942.914208-UTR-H-elongata_contig16069:967..11691622929942.914208-UTR-H-elongata_contig16069:967..1169Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig16069 968..1169 +
1691679217.2462955-UTR-H-elongata_contig16069:967..11691691679217.2462955-UTR-H-elongata_contig16069:967..1169Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig16069 968..1169 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929942.887765-CDS-H-elongata_contig16069:480..6631622929942.887765-CDS-H-elongata_contig16069:480..663Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16069 481..663 +
1691679217.2313826-CDS-H-elongata_contig16069:480..6631691679217.2313826-CDS-H-elongata_contig16069:480..663Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16069 481..663 +
1622929942.900573-CDS-H-elongata_contig16069:916..9671622929942.900573-CDS-H-elongata_contig16069:916..967Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16069 917..967 +
1691679217.238953-CDS-H-elongata_contig16069:916..9671691679217.238953-CDS-H-elongata_contig16069:916..967Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16069 917..967 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig16069.3888.1

>prot_H-elongata_contig16069.3888.1 ID=prot_H-elongata_contig16069.3888.1|Name=mRNA_H-elongata_contig16069.3888.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=78bp
MAASQASRGVTSHPMGAVDGSQGYRQAESRFSSLLAKGNAEAAASRRTAG
IPGPWEPVAREGEGPHRGIPAQESGQR*
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mRNA from alignment at H-elongata_contig16069:200..1169+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig16069.3888.1 ID=mRNA_H-elongata_contig16069.3888.1|Name=mRNA_H-elongata_contig16069.3888.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=970bp|location=Sequence derived from alignment at H-elongata_contig16069:200..1169+ (Himanthalia elongata Himel1 dioecious)
AGGCCTTCGACGATGCCTTGAGTACACATGGTCGGAAGCCTGGAGCAGAG
GTACGTTCTCGCGGACCAAGTTGACGGTGTTTTGAGTCGACGATGGAGTT
TCGCCTAGCTACTGCAGCAATCCTCAATTGATACGTGAAGTCCCTAAAAC
TCTCACCCAACCACTATATAGTTTTATTGCCGTGACCCCTTCGTTCGTGC
ACTTCAGTAACAAAATTTTGATGTTTCAATCCCCAACTCCACCGAAAACA
GGCTCGAAAATGGAAGAAACACGCCGTGCAGATGGCGGCGAGTCAGGCAT
CACGCGGGGTTACCTCCCACCCGATGGGGGCTGTAGATGGGAGCCAAGGT
TATCGTCAGGCCGAAAGCCGTTTTTCATCCCTGCTGGCGAAGGGGAACGC
GGAGGCGGCTGCGTCAAGACGCACAGCGGGAATCCCGGGGCCATGGGAAC
CGGTGGCACGAGAGGCGAGATAGCCTGTGTTGATTCCTATCTTAGGGAAA
GTCGAGTGGTTAGGGTGTCGTTGAAATTTAGTTTCGATCGAGTACCCTTG
GTTCCCGCCTGATCGTCTACTTTCAGCCTTCAGAGCTGTGCGAGACCATT
TATACGTTCACGATTATTTGATTTCCTCCATTTAGAGTGCCGTGGCTGAC
GCAGCAGTTCAGCTATTTTGCGACGTTGGTAATCGTTCCTCGTCGTCTTG
CGTTCCCTCCTCGCCAGGGTGAGGGGCCGCATAGAGGGATACCCGCACAA
GAATCCGGACAGCGGTAAGTGCCAAACCTTTGCTGCGTAAGAGTAGGTCG
CCCTGTAGAATGATGGAGCATGGGTTGGCATGTAAGGTATAGAACACGCG
ACGGGAGATACGACACCCGAAAAGTGCGCTATGAAAAAAACGCGTGTTTG
CCATTTGCTAACGCGAGGCCCGCTTATTCGACTGCCGAGAGTTCAGAGGT
TAAATTACACCCCCGCATGA
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Coding sequence (CDS) from alignment at H-elongata_contig16069:200..1169+

>mRNA_H-elongata_contig16069.3888.1 ID=mRNA_H-elongata_contig16069.3888.1|Name=mRNA_H-elongata_contig16069.3888.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=468bp|location=Sequence derived from alignment at H-elongata_contig16069:200..1169+ (Himanthalia elongata Himel1 dioecious)
ATGGCGGCGAGTCAGGCATCACGCGGGGTTACCTCCCACCCGATGGGGGC
TGTAGATGGGAGCCAAGGTTATCGTCAGGCCGAAAGCCGTTTTTCATCCC
TGCTGGCGAAGGGGAACGCGGAGGCGGCTGCGTCAAGACGCACAGCGGGA
ATCCCGGGGCCATGGGAACCGGTGGCACGAGAGATGGCGGCGAGTCAGGC
ATCACGCGGGGTTACCTCCCACCCGATGGGGGCTGTAGATGGGAGCCAAG
GTTATCGTCAGGCCGAAAGCCGTTTTTCATCCCTGCTGGCGAAGGGGAAC
GCGGAGGCGGCTGCGTCAAGACGCACAGCGGGAATCCCGGGGCCATGGGA
ACCGGTGGCACGAGAGGGTGAGGGGCCGCATAGAGGGATACCCGCACAAG
AATCCGGACAGCGGTAAGGTGAGGGGCCGCATAGAGGGATACCCGCACAA
GAATCCGGACAGCGGTAA
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