mRNA_H-elongata_contig160590.3882.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig160590.3882.1
Unique NamemRNA_H-elongata_contig160590.3882.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig160590.3882.1 vs. uniprot
Match: D8LEI0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEI0_ECTSI)

HSP 1 Score: 135 bits (341), Expect = 1.580e-35
Identity = 63/68 (92.65%), Postives = 67/68 (98.53%), Query Frame = 1
Query:    1 DGPTTILSGGWRMRVSLAKALFMEPKLLLLDEPTNHLDLHAVLWLDDYLSTKWRTTLLVVSHDQDFLD 204
            DGPTTILSGGWRMRVSLA+ALF+EPKLLLLDEPTNHLDLHAVLWLDDYL+ KW+TTLLVVSHDQDFLD
Sbjct:  483 DGPTTILSGGWRMRVSLARALFVEPKLLLLDEPTNHLDLHAVLWLDDYLARKWKTTLLVVSHDQDFLD 550          
BLAST of mRNA_H-elongata_contig160590.3882.1 vs. uniprot
Match: A0A6H5JF33_9PHAE (ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF33_9PHAE)

HSP 1 Score: 132 bits (332), Expect = 1.790e-34
Identity = 61/68 (89.71%), Postives = 66/68 (97.06%), Query Frame = 1
Query:    1 DGPTTILSGGWRMRVSLAKALFMEPKLLLLDEPTNHLDLHAVLWLDDYLSTKWRTTLLVVSHDQDFLD 204
            DGPTT LSGGWRMRVSLA+ALF++PKLLLLDEPTNHLDLHAVLWLDDYL+ KW+TTLLVVSHDQDFLD
Sbjct:  189 DGPTTTLSGGWRMRVSLARALFVKPKLLLLDEPTNHLDLHAVLWLDDYLAKKWKTTLLVVSHDQDFLD 256          
BLAST of mRNA_H-elongata_contig160590.3882.1 vs. uniprot
Match: A0A812YJ41_SYMMI (ABCF4 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812YJ41_SYMMI)

HSP 1 Score: 116 bits (291), Expect = 2.460e-31
Identity = 53/68 (77.94%), Postives = 63/68 (92.65%), Query Frame = 1
Query:    1 DGPTTILSGGWRMRVSLAKALFMEPKLLLLDEPTNHLDLHAVLWLDDYLSTKWRTTLLVVSHDQDFLD 204
            +GP+T LSGGWRMRV+LA ALF+EPKLLLLDEPTNHLDL+AVLWLD+YLS++W  TLL+VSHD DFL+
Sbjct:  109 NGPSTTLSGGWRMRVALAAALFIEPKLLLLDEPTNHLDLNAVLWLDEYLSSQWNGTLLIVSHDADFLE 176          
BLAST of mRNA_H-elongata_contig160590.3882.1 vs. uniprot
Match: A0A812QSP7_9DINO (ABCF4 protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812QSP7_9DINO)

HSP 1 Score: 108 bits (271), Expect = 1.140e-28
Identity = 54/68 (79.41%), Postives = 58/68 (85.29%), Query Frame = 1
Query:    1 DGPTTILSGGWRMRVSLAKALFMEPKLLLLDEPTNHLDLHAVLWLDDYLSTKWRTTLLVVSHDQDFLD 204
            DGP  +LSGGWRMRVSLAKALF+EP LLLLDEPTNHLDL AVLWLD+YL   +  TLLVVSHD DFLD
Sbjct:    6 DGPVNVLSGGWRMRVSLAKALFLEPDLLLLDEPTNHLDLDAVLWLDEYLCD-YPKTLLVVSHDADFLD 72          
BLAST of mRNA_H-elongata_contig160590.3882.1 vs. uniprot
Match: A0A146KVD6_LYGHE (ATP-binding cassette sub-family F member 1 (Fragment) n=1 Tax=Lygus hesperus TaxID=30085 RepID=A0A146KVD6_LYGHE)

HSP 1 Score: 107 bits (267), Expect = 3.690e-28
Identity = 51/68 (75.00%), Postives = 58/68 (85.29%), Query Frame = 1
Query:    1 DGPTTILSGGWRMRVSLAKALFMEPKLLLLDEPTNHLDLHAVLWLDDYLSTKWRTTLLVVSHDQDFLD 204
            D PT   SGGWRMRVSLA+ALF+EP LLLLDEPTNHLDL+AV+WLD+YL   W+ TLL+VSHDQ FLD
Sbjct:   64 DRPTNSFSGGWRMRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQG-WKKTLLIVSHDQSFLD 130          
BLAST of mRNA_H-elongata_contig160590.3882.1 vs. uniprot
Match: A0A3L6QYK4_PANMI (ABC transporter domain-containing protein n=1 Tax=Panicum miliaceum TaxID=4540 RepID=A0A3L6QYK4_PANMI)

HSP 1 Score: 104 bits (259), Expect = 3.010e-27
Identity = 47/65 (72.31%), Postives = 57/65 (87.69%), Query Frame = 1
Query:   10 TTILSGGWRMRVSLAKALFMEPKLLLLDEPTNHLDLHAVLWLDDYLSTKWRTTLLVVSHDQDFLD 204
            T   SGGWRMR+SLA+ALFM+P LLLLDEPTNHLDL AVLWL++YL T+W+  L+VVSHD+DFL+
Sbjct:   27 TKEFSGGWRMRISLARALFMQPTLLLLDEPTNHLDLRAVLWLEEYLCTQWKKMLIVVSHDRDFLN 91          
BLAST of mRNA_H-elongata_contig160590.3882.1 vs. uniprot
Match: A0A0M3JNR2_ANISI (ABC transporter domain-containing protein n=2 Tax=Anisakis simplex TaxID=6269 RepID=A0A0M3JNR2_ANISI)

HSP 1 Score: 103 bits (256), Expect = 4.230e-27
Identity = 47/68 (69.12%), Postives = 57/68 (83.82%), Query Frame = 1
Query:    1 DGPTTILSGGWRMRVSLAKALFMEPKLLLLDEPTNHLDLHAVLWLDDYLSTKWRTTLLVVSHDQDFLD 204
            + P    SGGWRMR+SLA+ALF+EP LL+LDEPTNHLDL+AV+WLD+YL   W+ TLL+VSHDQ FLD
Sbjct:   28 EKPVEAFSGGWRMRISLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQA-WKKTLLIVSHDQGFLD 94          
BLAST of mRNA_H-elongata_contig160590.3882.1 vs. uniprot
Match: A0A7S1ZRI5_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZRI5_9STRA)

HSP 1 Score: 111 bits (278), Expect = 5.060e-27
Identity = 51/66 (77.27%), Postives = 61/66 (92.42%), Query Frame = 1
Query:    7 PTTILSGGWRMRVSLAKALFMEPKLLLLDEPTNHLDLHAVLWLDDYLSTKWRTTLLVVSHDQDFLD 204
            PT + SGGWRMR+SLA+ALF+EP LL+LDEPTNHLDL+AV+WLDDYL TKW+ TLL+VSHDQDFL+
Sbjct:  339 PTKMFSGGWRMRISLARALFIEPTLLMLDEPTNHLDLNAVIWLDDYL-TKWKKTLLIVSHDQDFLN 403          
BLAST of mRNA_H-elongata_contig160590.3882.1 vs. uniprot
Match: A9V3B7_MONBE (Predicted protein n=1 Tax=Monosiga brevicollis TaxID=81824 RepID=A9V3B7_MONBE)

HSP 1 Score: 111 bits (278), Expect = 5.100e-27
Identity = 53/68 (77.94%), Postives = 60/68 (88.24%), Query Frame = 1
Query:    1 DGPTTILSGGWRMRVSLAKALFMEPKLLLLDEPTNHLDLHAVLWLDDYLSTKWRTTLLVVSHDQDFLD 204
            D PT   SGGWRMRVSLA+ALFMEP LL+LDEPTNHLDL+AV+WLD YLS +W+ TLL+VSHDQDFLD
Sbjct:  491 DRPTKNFSGGWRMRVSLARALFMEPTLLMLDEPTNHLDLNAVIWLDHYLS-RWKKTLLIVSHDQDFLD 557          
BLAST of mRNA_H-elongata_contig160590.3882.1 vs. uniprot
Match: A0A7S4RAV0_9STRA (Hypothetical protein n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4RAV0_9STRA)

HSP 1 Score: 111 bits (278), Expect = 5.110e-27
Identity = 51/66 (77.27%), Postives = 61/66 (92.42%), Query Frame = 1
Query:    7 PTTILSGGWRMRVSLAKALFMEPKLLLLDEPTNHLDLHAVLWLDDYLSTKWRTTLLVVSHDQDFLD 204
            PT + SGGWRMR+SLA+ALF+EP LL+LDEPTNHLDL+AV+WLDDYL TKW+ TLL+VSHDQDFL+
Sbjct:  724 PTKMFSGGWRMRISLARALFIEPTLLMLDEPTNHLDLNAVIWLDDYL-TKWKKTLLIVSHDQDFLN 788          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig160590.3882.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LEI0_ECTSI1.580e-3592.65Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JF33_9PHAE1.790e-3489.71ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
A0A812YJ41_SYMMI2.460e-3177.94ABCF4 protein n=1 Tax=Symbiodinium microadriaticum... [more]
A0A812QSP7_9DINO1.140e-2879.41ABCF4 protein n=1 Tax=Symbiodinium natans TaxID=87... [more]
A0A146KVD6_LYGHE3.690e-2875.00ATP-binding cassette sub-family F member 1 (Fragme... [more]
A0A3L6QYK4_PANMI3.010e-2772.31ABC transporter domain-containing protein n=1 Tax=... [more]
A0A0M3JNR2_ANISI4.230e-2769.12ABC transporter domain-containing protein n=2 Tax=... [more]
A0A7S1ZRI5_9STRA5.060e-2777.27Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A9V3B7_MONBE5.100e-2777.94Predicted protein n=1 Tax=Monosiga brevicollis Tax... [more]
A0A7S4RAV0_9STRA5.110e-2777.27Hypothetical protein n=3 Tax=Ditylum brightwellii ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig160590contigH-elongata_contig160590:636..845 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score137.5
Seed ortholog evalue2.4e-30
Seed eggNOG ortholog2880.D8LEI0
KEGG koko:K06184
EggNOG free text desc.translation activator activity
EggNOG OGsCOG0488@1,KOG0066@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03012
Hectar predicted targeting categoryother localisation
Exons1
Model size210
Cds size210
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929942.266085-CDS-H-elongata_contig160590:635..8451622929942.266085-CDS-H-elongata_contig160590:635..845Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig160590 636..845 +
1691679217.0092607-CDS-H-elongata_contig160590:635..8451691679217.0092607-CDS-H-elongata_contig160590:635..845Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig160590 636..845 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig160590.3882.1prot_H-elongata_contig160590.3882.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig160590 636..845 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig160590.3882.1

>prot_H-elongata_contig160590.3882.1 ID=prot_H-elongata_contig160590.3882.1|Name=mRNA_H-elongata_contig160590.3882.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=70bp
DGPTTILSGGWRMRVSLAKALFMEPKLLLLDEPTNHLDLHAVLWLDDYLS
TKWRTTLLVVSHDQDFLDR*
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mRNA from alignment at H-elongata_contig160590:636..845+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig160590.3882.1 ID=mRNA_H-elongata_contig160590.3882.1|Name=mRNA_H-elongata_contig160590.3882.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=210bp|location=Sequence derived from alignment at H-elongata_contig160590:636..845+ (Himanthalia elongata Himel1 dioecious)
GACGGCCCCACGACCATCTTGAGCGGCGGGTGGCGCATGCGAGTGTCTCT GGCGAAAGCCCTCTTCATGGAGCCCAAGCTCCTCCTCCTGGACGAGCCGA CGAACCACCTCGACCTCCACGCCGTCCTGTGGCTCGACGACTATCTGTCC ACCAAGTGGAGGACCACGCTTCTGGTGGTGTCGCACGACCAAGACTTCCT CGACAGGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig160590:636..845+

>mRNA_H-elongata_contig160590.3882.1 ID=mRNA_H-elongata_contig160590.3882.1|Name=mRNA_H-elongata_contig160590.3882.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=420bp|location=Sequence derived from alignment at H-elongata_contig160590:636..845+ (Himanthalia elongata Himel1 dioecious)
GACGGCCCCACGACCATCTTGAGCGGCGGGTGGCGCATGCGAGTGTCTCT
GGCGAAAGCCCTCTTCATGGAGCCCAAGCTCCTCCTCCTGGACGAGCCGA
CGAACCACCTCGACCTCCACGCCGTCCTGTGGCTCGACGACTATCTGTCC
ACCAAGTGGAGGACCACGCTTCTGGTGGTGTCGCACGACCAAGACTTCCT
CGACAGGTGAGACGGCCCCACGACCATCTTGAGCGGCGGGTGGCGCATGC
GAGTGTCTCTGGCGAAAGCCCTCTTCATGGAGCCCAAGCTCCTCCTCCTG
GACGAGCCGACGAACCACCTCGACCTCCACGCCGTCCTGTGGCTCGACGA
CTATCTGTCCACCAAGTGGAGGACCACGCTTCTGGTGGTGTCGCACGACC
AAGACTTCCTCGACAGGTGA
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