mRNA_H-elongata_contig160521.3879.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig160521.3879.1
Unique NamemRNA_H-elongata_contig160521.3879.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig160521.3879.1 vs. uniprot
Match: A0A2R6WAH4_MARPO (MFS domain-containing protein n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6WAH4_MARPO)

HSP 1 Score: 69.3 bits (168), Expect = 2.880e-12
Identity = 31/62 (50.00%), Postives = 44/62 (70.97%), Query Frame = 1
Query:    1 GYYAGVLISSYVAGAILMSYFWGRFADQYGRRKVILVGLVSTVILSIAFGVSKTFWWAFFCR 186
            G+YAG + S+++ G  L S  WG  AD+YGR+ V+L G+VS ++ SI FG+S+ FW AFF R
Sbjct:  172 GFYAGYIGSAFMFGRFLTSMQWGVIADKYGRKPVMLAGVVSVIVFSIMFGLSQDFWMAFFAR 233          
BLAST of mRNA_H-elongata_contig160521.3879.1 vs. uniprot
Match: UPI00053AB22C (probable peptide/nitrate transporter At3g43790 n=1 Tax=Camelina sativa TaxID=90675 RepID=UPI00053AB22C)

HSP 1 Score: 65.9 bits (159), Expect = 3.160e-12
Identity = 29/62 (46.77%), Postives = 42/62 (67.74%), Query Frame = 1
Query:    1 GYYAGVLISSYVAGAILMSYFWGRFADQYGRRKVILVGLVSTVILSIAFGVSKTFWWAFFCR 186
            G+YAG + SS++ G  L S FWG+ AD+YGR+ +IL+G  S +I +  FG+S +FW A   R
Sbjct:   37 GFYAGFVGSSFMIGRALTSIFWGKLADRYGRKPIILIGTFSVIIFNTLFGLSTSFWLAISSR 98          
BLAST of mRNA_H-elongata_contig160521.3879.1 vs. uniprot
Match: A0A7J7N9H9_9MAGN (MFS domain-containing protein n=1 Tax=Kingdonia uniflora TaxID=39325 RepID=A0A7J7N9H9_9MAGN)

HSP 1 Score: 68.2 bits (165), Expect = 7.440e-12
Identity = 30/62 (48.39%), Postives = 43/62 (69.35%), Query Frame = 1
Query:    1 GYYAGVLISSYVAGAILMSYFWGRFADQYGRRKVILVGLVSTVILSIAFGVSKTFWWAFFCR 186
            GYYAG + SS++ G  L SYFWG  AD+YGR+ V++ GL++ V+ +  FG+S +FW A   R
Sbjct:   78 GYYAGFVGSSFMFGRALTSYFWGVIADRYGRKPVVIFGLITIVVFNTLFGLSTSFWMAIATR 139          
BLAST of mRNA_H-elongata_contig160521.3879.1 vs. uniprot
Match: A0A7R9UB92_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UB92_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 9.050e-12
Identity = 29/55 (52.73%), Postives = 42/55 (76.36%), Query Frame = 1
Query:    1 GYYAGVLISSYVAGAILMSYFWGRFADQYGRRKVILVGLVSTVILSIAFGVSKTF 165
            GYYAG + ++++AG  + S+FWG +AD+YGR+ VIL+G  S  +LS+ FGVS TF
Sbjct:   69 GYYAGFVGAAFMAGRTVSSFFWGIYADRYGRKPVILIGCASIAVLSVLFGVSTTF 123          
BLAST of mRNA_H-elongata_contig160521.3879.1 vs. uniprot
Match: D8LP14_ECTSI (MFS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP14_ECTSI)

HSP 1 Score: 63.5 bits (153), Expect = 1.350e-11
Identity = 28/54 (51.85%), Postives = 40/54 (74.07%), Query Frame = 1
Query:    1 GYYAGVLISSYVAGAILMSYFWGRFADQYGRRKVILVGLVSTVILSIAFGVSKT 162
            GYY+  L+ SY  G +L SY WG FAD++GR+ V+L+G+  T + SIAFG+S+T
Sbjct:   39 GYYSSWLLISYTVGGLLSSYPWGIFADRFGRKPVMLIGVCGTGLFSIAFGMSET 92          
BLAST of mRNA_H-elongata_contig160521.3879.1 vs. uniprot
Match: A0A6D2JEE3_9BRAS (MFS domain-containing protein n=4 Tax=Coluteocarpeae TaxID=1394505 RepID=A0A6D2JEE3_9BRAS)

HSP 1 Score: 67.0 bits (162), Expect = 1.860e-11
Identity = 28/62 (45.16%), Postives = 43/62 (69.35%), Query Frame = 1
Query:    1 GYYAGVLISSYVAGAILMSYFWGRFADQYGRRKVILVGLVSTVILSIAFGVSKTFWWAFFCR 186
            G+YAG + SS++ G  L S FWG+ AD+YGR+ +IL+G  + +I +  FG+S +FW+A   R
Sbjct:   79 GFYAGFVASSFMIGRALTSIFWGKLADRYGRKPIILIGTFTVIIFNTLFGLSTSFWFAISIR 140          
BLAST of mRNA_H-elongata_contig160521.3879.1 vs. uniprot
Match: A0A660KNB3_9ROSI (MFS domain-containing protein n=2 Tax=Carpinus fangiana TaxID=176857 RepID=A0A660KNB3_9ROSI)

HSP 1 Score: 66.6 bits (161), Expect = 2.540e-11
Identity = 31/62 (50.00%), Postives = 42/62 (67.74%), Query Frame = 1
Query:    1 GYYAGVLISSYVAGAILMSYFWGRFADQYGRRKVILVGLVSTVILSIAFGVSKTFWWAFFCR 186
            GYYAG + SS++ G  L S FWG  AD+YGR+ VI++G+V+ VI +  FG+S  FW A   R
Sbjct:   77 GYYAGYIGSSFMLGRALTSVFWGIVADRYGRKPVIVIGIVAVVIFNTLFGLSVNFWMAITTR 138          
BLAST of mRNA_H-elongata_contig160521.3879.1 vs. uniprot
Match: A0A1S2Z7R5_CICAR (protein ZINC INDUCED FACILITATOR-LIKE 1-like n=1 Tax=Cicer arietinum TaxID=3827 RepID=A0A1S2Z7R5_CICAR)

HSP 1 Score: 66.2 bits (160), Expect = 3.480e-11
Identity = 29/61 (47.54%), Postives = 43/61 (70.49%), Query Frame = 1
Query:    4 YYAGVLISSYVAGAILMSYFWGRFADQYGRRKVILVGLVSTVILSIAFGVSKTFWWAFFCR 186
            YYAG + SS++ G  L S FWG  +D+YGR+ VI++G+++ VIL+  FG+S +FW A   R
Sbjct:   78 YYAGYVGSSFMLGRSLTSIFWGMISDRYGRKPVIIIGIIAVVILNTLFGLSTSFWMAVITR 138          
BLAST of mRNA_H-elongata_contig160521.3879.1 vs. uniprot
Match: A0A4Y7L0Q8_PAPSO (MFS domain-containing protein n=3 Tax=Papaver somniferum TaxID=3469 RepID=A0A4Y7L0Q8_PAPSO)

HSP 1 Score: 66.2 bits (160), Expect = 3.490e-11
Identity = 31/62 (50.00%), Postives = 41/62 (66.13%), Query Frame = 1
Query:    1 GYYAGVLISSYVAGAILMSYFWGRFADQYGRRKVILVGLVSTVILSIAFGVSKTFWWAFFCR 186
            GYYAG + S+Y+ G  L SYFWG FAD+YGR+ VI+ G +  +I +  FG+S  FW A   R
Sbjct:   80 GYYAGYVGSAYMFGRALTSYFWGVFADRYGRKPVIVFGTMIVLIFNTLFGLSTNFWMAISMR 141          
BLAST of mRNA_H-elongata_contig160521.3879.1 vs. uniprot
Match: PTR36_ARATH (Probable peptide/nitrate transporter At3g43790 n=15 Tax=Camelineae TaxID=980083 RepID=PTR36_ARATH)

HSP 1 Score: 65.9 bits (159), Expect = 4.750e-11
Identity = 29/62 (46.77%), Postives = 42/62 (67.74%), Query Frame = 1
Query:    1 GYYAGVLISSYVAGAILMSYFWGRFADQYGRRKVILVGLVSTVILSIAFGVSKTFWWAFFCR 186
            G+YAG + SS++ G  L S FWG+ AD+YGR+ +IL+G  S +I +  FG+S +FW A   R
Sbjct:   75 GFYAGFVGSSFMIGRALTSIFWGKLADRYGRKPIILIGTFSVIIFNTLFGLSTSFWLAISVR 136          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig160521.3879.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2R6WAH4_MARPO2.880e-1250.00MFS domain-containing protein n=2 Tax=Marchantia p... [more]
UPI00053AB22C3.160e-1246.77probable peptide/nitrate transporter At3g43790 n=1... [more]
A0A7J7N9H9_9MAGN7.440e-1248.39MFS domain-containing protein n=1 Tax=Kingdonia un... [more]
A0A7R9UB92_9STRA9.050e-1252.73Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
D8LP14_ECTSI1.350e-1151.85MFS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6D2JEE3_9BRAS1.860e-1145.16MFS domain-containing protein n=4 Tax=Coluteocarpe... [more]
A0A660KNB3_9ROSI2.540e-1150.00MFS domain-containing protein n=2 Tax=Carpinus fan... [more]
A0A1S2Z7R5_CICAR3.480e-1147.54protein ZINC INDUCED FACILITATOR-LIKE 1-like n=1 T... [more]
A0A4Y7L0Q8_PAPSO3.490e-1150.00MFS domain-containing protein n=3 Tax=Papaver somn... [more]
PTR36_ARATH4.750e-1146.77Probable peptide/nitrate transporter At3g43790 n=1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig160521contigH-elongata_contig160521:103..291 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score78.6
Seed ortholog evalue1.2e-12
Seed eggNOG ortholog2880.D8LRH9
EggNOG free text desc.major facilitator superfamily
EggNOG OGsKOG2615@1,KOG2615@2759
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal anchor
Exons1
Model size189
Cds size189
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929942.0181563-CDS-H-elongata_contig160521:102..2911622929942.0181563-CDS-H-elongata_contig160521:102..291Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig160521 103..291 +
1691679216.9042525-CDS-H-elongata_contig160521:102..2911691679216.9042525-CDS-H-elongata_contig160521:102..291Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig160521 103..291 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig160521.3879.1prot_H-elongata_contig160521.3879.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig160521 103..291 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig160521.3879.1

>prot_H-elongata_contig160521.3879.1 ID=prot_H-elongata_contig160521.3879.1|Name=mRNA_H-elongata_contig160521.3879.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=63bp
GYYAGVLISSYVAGAILMSYFWGRFADQYGRRKVILVGLVSTVILSIAFG
VSKTFWWAFFCR*
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mRNA from alignment at H-elongata_contig160521:103..291+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig160521.3879.1 ID=mRNA_H-elongata_contig160521.3879.1|Name=mRNA_H-elongata_contig160521.3879.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=189bp|location=Sequence derived from alignment at H-elongata_contig160521:103..291+ (Himanthalia elongata Himel1 dioecious)
GGGTACTACGCAGGAGTACTGATATCAAGCTATGTGGCCGGTGCTATCTT GATGTCTTATTTCTGGGGTCGGTTTGCCGATCAATACGGGCGCCGCAAGG TGATCCTTGTCGGGTTGGTGTCGACGGTCATACTCTCGATAGCGTTCGGA GTTTCCAAGACATTCTGGTGGGCATTCTTCTGCAGGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig160521:103..291+

>mRNA_H-elongata_contig160521.3879.1 ID=mRNA_H-elongata_contig160521.3879.1|Name=mRNA_H-elongata_contig160521.3879.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=378bp|location=Sequence derived from alignment at H-elongata_contig160521:103..291+ (Himanthalia elongata Himel1 dioecious)
GGGTACTACGCAGGAGTACTGATATCAAGCTATGTGGCCGGTGCTATCTT
GATGTCTTATTTCTGGGGTCGGTTTGCCGATCAATACGGGCGCCGCAAGG
TGATCCTTGTCGGGTTGGTGTCGACGGTCATACTCTCGATAGCGTTCGGA
GTTTCCAAGACATTCTGGTGGGCATTCTTCTGCAGGTGAGGGTACTACGC
AGGAGTACTGATATCAAGCTATGTGGCCGGTGCTATCTTGATGTCTTATT
TCTGGGGTCGGTTTGCCGATCAATACGGGCGCCGCAAGGTGATCCTTGTC
GGGTTGGTGTCGACGGTCATACTCTCGATAGCGTTCGGAGTTTCCAAGAC
ATTCTGGTGGGCATTCTTCTGCAGGTGA
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