mRNA_H-elongata_contig160478.3876.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig160478.3876.1
Unique NamemRNA_H-elongata_contig160478.3876.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig160478.3876.1 vs. uniprot
Match: D8LMP3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMP3_ECTSI)

HSP 1 Score: 102 bits (253), Expect = 1.900e-23
Identity = 47/48 (97.92%), Postives = 48/48 (100.00%), Query Frame = 1 
Query:    1 RGDLESVQKYISTGGDLERMDWDNCTALHIACAGAFSQVAQLLINKGA 144
            RGDLESVQKYI+TGGDLERMDWDNCTALHIACAGAFSQVAQLLINKGA
Sbjct:   86 RGDLESVQKYIATGGDLERMDWDNCTALHIACAGAFSQVAQLLINKGA 133
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BLAST of mRNA_H-elongata_contig160478.3876.1 vs. uniprot
Match: A0A103Y1S0_CYNCS (Ankyrin repeat-containing protein n=2 Tax=Cynara cardunculus var. scolymus TaxID=59895 RepID=A0A103Y1S0_CYNCS)

HSP 1 Score: 50.8 bits (120), Expect = 4.040e-5
Identity = 22/47 (46.81%), Postives = 33/47 (70.21%), Query Frame = 1 
Query:    4 GDLESVQKYISTGGDLERMDWDNCTALHIACAGAFSQVAQLLINKGA 144
            GDLE +++ +++G D+   D DN TALH+A    FS VA+LL+ +GA
Sbjct:   53 GDLEGIKELLTSGTDVNFKDIDNRTALHVAACQGFSNVAELLLERGA 99
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BLAST of mRNA_H-elongata_contig160478.3876.1 vs. uniprot
Match: M1VJX3_CYAM1 (Similar to Raf/ATN-like protein kinase, with ankyrin repeats n=1 Tax=Cyanidioschyzon merolae (strain NIES-3377 / 10D) TaxID=280699 RepID=M1VJX3_CYAM1)

HSP 1 Score: 50.4 bits (119), Expect = 5.950e-5
Identity = 21/48 (43.75%), Postives = 34/48 (70.83%), Query Frame = 1 
Query:    1 RGDLESVQKYISTGGDLERMDWDNCTALHIACAGAFSQVAQLLINKGA 144
            RGD+ +V+ +I  G D+ + D+D  TALH+A A  +++VA+LL+  GA
Sbjct: 1201 RGDIAAVRSFIGEGVDVRQADYDRRTALHLAAAEGYTEVAKLLVEAGA 1248
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig160478.3876.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LMP3_ECTSI1.900e-2397.92Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A103Y1S0_CYNCS4.040e-546.81Ankyrin repeat-containing protein n=2 Tax=Cynara c... [more]
M1VJX3_CYAM15.950e-543.75Similar to Raf/ATN-like protein kinase, with ankyr... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig160478contigH-elongata_contig160478:275..1087 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score101.7
Seed ortholog evalue2.1e-19
Seed eggNOG ortholog2880.D8LMP3
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAnkyrin-repeat protein
Ec32 orthologEc-00_005150.1
Exons2
Model size306
Cds size306
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929941.8130038-CDS-H-elongata_contig160478:274..4541622929941.8130038-CDS-H-elongata_contig160478:274..454Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig160478 275..454 -
1691679216.8432171-CDS-H-elongata_contig160478:274..4541691679216.8432171-CDS-H-elongata_contig160478:274..454Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig160478 275..454 -
1622929941.8421185-CDS-H-elongata_contig160478:961..10871622929941.8421185-CDS-H-elongata_contig160478:961..1087Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig160478 962..1087 -
1691679216.8565292-CDS-H-elongata_contig160478:961..10871691679216.8565292-CDS-H-elongata_contig160478:961..1087Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig160478 962..1087 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig160478.3876.1prot_H-elongata_contig160478.3876.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig160478 275..1087 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig160478.3876.1

>prot_H-elongata_contig160478.3876.1 ID=prot_H-elongata_contig160478.3876.1|Name=mRNA_H-elongata_contig160478.3876.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=102bp
RGDLESVQKYISTGGDLERMDWDNCTALHIACAGAFSQVAQLLINKGANL
DAKTRIEHTPLHLACRYGHYNIALALLVKGAEVDSRDNERNTPLHKAARY
KH
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mRNA from alignment at H-elongata_contig160478:275..1087-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig160478.3876.1 ID=mRNA_H-elongata_contig160478.3876.1|Name=mRNA_H-elongata_contig160478.3876.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=813bp|location=Sequence derived from alignment at H-elongata_contig160478:275..1087- (Himanthalia elongata Himel1 dioecious)
AGAGGCGATCTGGAAAGCGTCCAAAAGTATATAAGTACGGGGGGCGACTT
GGAGCGAATGGATTGGGATAACTGCACGGCGTTACACATCGCCTGCGCCG
GAGCGTTTTCTCAAGTGGCACAATTGGTGAGAGCAGAGGAGAGTACAGTA
GAGACTCTGATGTTTTTTTCACTTTCCACACTTTTTTTTAATGATTCTGT
TTTTTATGTTTTATATTCGTTTCCTCTTTTCTTTCAATTTTTTTTCTCCT
TAATTTCTCCTTTCGGGTCCAGGAAAAAAACTGGGTATAACTTTATATTA
TTTCAATATAATAAAGCCTGAAATATTGAAAACCCTTCGCGGGGAAACCT
CACGTTCCCCCCTTCCCTTAATAACTCAATGAAAATGCTGTTCTTCAAAA
ATAATTATAGTCTCAAATTTAATCTGTAGGACTGTAGGCAATGCGTTTTG
ATTTGAGTGTCGCATTATTTTTTACTTTTTGTAGTTACGAGAACTAGTAA
ATAATACAACACTTTAACTATGGGATGGATATAACATGTGTAAACACAAG
TACCCCCCACCCCCCTCATTCGGGGCGCCTTTTATTTCCTTTTCGTCATC
ACCCTTTATTTCGTGTGTGCACTGTGCGTGCAGCTTATCAACAAGGGGGC
AAATCTGGATGCGAAGACGCGCATCGAGCACACCCCGCTACACCTGGCGT
GTCGCTACGGCCACTACAACATCGCCTTGGCGCTTCTCGTTAAGGGGGCG
GAGGTTGATTCGAGAGATAACGAACGCAACACCCCTTTGCATAAAGCCGC
CAGGTATAAACAC
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Coding sequence (CDS) from alignment at H-elongata_contig160478:275..1087-

>mRNA_H-elongata_contig160478.3876.1 ID=mRNA_H-elongata_contig160478.3876.1|Name=mRNA_H-elongata_contig160478.3876.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=612bp|location=Sequence derived from alignment at H-elongata_contig160478:275..1087- (Himanthalia elongata Himel1 dioecious)
AGAGGCGATCTGGAAAGCGTCCAAAAGTATATAAGTACGGGGGGCGACTT
GGAGCGAATGGATTGGGATAACTGCACGGCGTTACACATCGCCTGCGCCG
GAGCGTTTTCTCAAGTGGCACAATTGAGAGGCGATCTGGAAAGCGTCCAA
AAGTATATAAGTACGGGGGGCGACTTGGAGCGAATGGATTGGGATAACTG
CACGGCGTTACACATCGCCTGCGCCGGAGCGTTTTCTCAAGTGGCACAAT
TGCTTATCAACAAGGGGGCAAATCTGGATGCGAAGACGCGCATCGAGCAC
ACCCCGCTACACCTGGCGTGTCGCTACGGCCACTACAACATCGCCTTGGC
GCTTCTCGTTAAGGGGGCGGAGGTTGATTCGAGAGATAACGAACGCAACA
CCCCTTTGCATAAAGCCGCCAGGTATAAACACCTTATCAACAAGGGGGCA
AATCTGGATGCGAAGACGCGCATCGAGCACACCCCGCTACACCTGGCGTG
TCGCTACGGCCACTACAACATCGCCTTGGCGCTTCTCGTTAAGGGGGCGG
AGGTTGATTCGAGAGATAACGAACGCAACACCCCTTTGCATAAAGCCGCC
AGGTATAAACAC
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