mRNA_H-elongata_contig160441.3875.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig160441.3875.1
Unique NamemRNA_H-elongata_contig160441.3875.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig160441.3875.1 vs. uniprot
Match: A0A6H5KM40_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KM40_9PHAE)

HSP 1 Score: 110 bits (275), Expect = 5.840e-27
Identity = 63/91 (69.23%), Postives = 72/91 (79.12%), Query Frame = 1
Query:    1 WSLQFINYPLLLLAKSCKLVPVMLVGVLMLGRRHTQAEYAAVLLITAGVALFSLKPGTIGE-ALGREGGGDE---DNRFVGLSLVRGSIRL 261
            WSL +I+YPLLLLAKSCKLVPVMLVGV++LGRRHT+AEY AV LITAGVALFSLKPG   E ALG EG GDE       +GL+LV  ++ L
Sbjct:  100 WSLSYISYPLLLLAKSCKLVPVMLVGVVLLGRRHTRAEYLAVGLITAGVALFSLKPGAFKEDALGEEGAGDEAGGQKNAIGLALVTVNLLL 190          
BLAST of mRNA_H-elongata_contig160441.3875.1 vs. uniprot
Match: D7FT27_ECTSI (UDP-Glc/Gal endoplasmic reticulum nucleotide sugar transporter n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT27_ECTSI)

HSP 1 Score: 99.4 bits (246), Expect = 9.720e-23
Identity = 59/91 (64.84%), Postives = 68/91 (74.73%), Query Frame = 1
Query:    1 WSLQFINYPLLLLAKSCKLVPVMLVGVLMLGRRHTQAEYAAVLLITAGVALFSLKPGTIGE-ALGREGGGDED---NRFVGLSLVRGSIRL 261
            WSL +I+YPLLLLAKSCKLVPVMLVGV++LGRRHT+AEY AV LITAGVALFSLKPG   E ALG           N  +GL+LV  ++ L
Sbjct:  100 WSLSYISYPLLLLAKSCKLVPVMLVGVVLLGRRHTRAEYLAVGLITAGVALFSLKPGAFKEDALGEXXXXXXXXGKNNAIGLALVTVNLLL 190          
BLAST of mRNA_H-elongata_contig160441.3875.1 vs. uniprot
Match: A0A835ZGA1_9STRA (UDP-Glc/Gal endoplasmic reticulum nucleotide sugar transporter n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGA1_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 3.590e-16
Identity = 42/56 (75.00%), Postives = 50/56 (89.29%), Query Frame = 1
Query:    4 SLQFINYPLLLLAKSCKLVPVMLVGVLMLGRRHTQAEYAAVLLITAGVALFSLKPG 171
            SL +INYPLLLLAKSCKLVPVM++G L+ G+R+T+AEY +V LITAGVALFS KPG
Sbjct:   97 SLAYINYPLLLLAKSCKLVPVMVMGFLVSGKRYTRAEYLSVGLITAGVALFSYKPG 152          
BLAST of mRNA_H-elongata_contig160441.3875.1 vs. uniprot
Match: A0A7S3YET9_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YET9_HETAK)

HSP 1 Score: 76.3 bits (186), Expect = 2.070e-15
Identity = 38/57 (66.67%), Postives = 48/57 (84.21%), Query Frame = 1
Query:    1 WSLQFINYPLLLLAKSCKLVPVMLVGVLMLGRRHTQAEYAAVLLITAGVALFSLKPG 171
            +SL+FIN+PLL+L KSCKLVPVML+G L+ G+R+   +YAAV LIT GVA FS+KPG
Sbjct:  106 YSLRFINFPLLVLGKSCKLVPVMLMGALIGGKRYPAKDYAAVALITVGVAAFSMKPG 162          
BLAST of mRNA_H-elongata_contig160441.3875.1 vs. uniprot
Match: A0A8B7K4D0_9AVES (solute carrier family 35 member B1-like n=1 Tax=Apteryx mantelli mantelli TaxID=202946 RepID=A0A8B7K4D0_9AVES)

HSP 1 Score: 65.5 bits (158), Expect = 1.220e-11
Identity = 35/74 (47.30%), Postives = 49/74 (66.22%), Query Frame = 1
Query:    4 SLQFINYPLLLLAKSCKLVPVMLVGVLMLGRRHTQAEYAAVLLITAGVALFSLKPGTIGEALGREGGGDEDNRF 225
            +LQF+NYP  +L KSCK +PVML+GV +L +++  A+Y  VLLI  GVALF  KP        ++G G +D+ F
Sbjct:   46 ALQFVNYPTQVLGKSCKPIPVMLLGVTLLRKKYPLAKYLCVLLIVTGVALFMYKP--------KKGAGSDDHVF 111          
BLAST of mRNA_H-elongata_contig160441.3875.1 vs. uniprot
Match: K7F8Z5_PELSI (Solute carrier family 35 member B1 n=3 Tax=Cryptodira TaxID=8464 RepID=K7F8Z5_PELSI)

HSP 1 Score: 68.2 bits (165), Expect = 1.480e-11
Identity = 37/76 (48.68%), Postives = 49/76 (64.47%), Query Frame = 1
Query:    4 SLQFINYPLLLLAKSCKLVPVMLVGVLMLGRRHTQAEYAAVLLITAGVALFSLKPGTIGEALGREGGGDEDNRFVG 231
            +LQF+NYP  +L KSCK +PVML+GV ML +++  A+Y  VLLI  GVALF  KP        ++GG D D+   G
Sbjct:   75 ALQFVNYPTQVLGKSCKPIPVMLLGVTMLRKKYPLAKYLCVLLIVTGVALFMYKP--------KKGGDDADDHIFG 142          
BLAST of mRNA_H-elongata_contig160441.3875.1 vs. uniprot
Match: A0A7J7U947_PIPKU (Solute carrier family 35 member B1 n=5 Tax=Eutheria TaxID=9347 RepID=A0A7J7U947_PIPKU)

HSP 1 Score: 67.0 bits (162), Expect = 2.820e-11
Identity = 33/55 (60.00%), Postives = 43/55 (78.18%), Query Frame = 1
Query:    4 SLQFINYPLLLLAKSCKLVPVMLVGVLMLGRRHTQAEYAAVLLITAGVALFSLKP 168
            +LQF+NYP  +L KSCK +PVML+GV +L +R+ +A+Y  VLLI AGVALF  KP
Sbjct:   37 ALQFVNYPTQVLGKSCKPIPVMLLGVTLLKKRYPKAKYLCVLLIVAGVALFMYKP 91          
BLAST of mRNA_H-elongata_contig160441.3875.1 vs. uniprot
Match: A0A7L1XF44_9AVES (S35B1 protein (Fragment) n=2 Tax=Neognathae TaxID=8825 RepID=A0A7L1XF44_9AVES)

HSP 1 Score: 66.6 bits (161), Expect = 3.840e-11
Identity = 36/74 (48.65%), Postives = 50/74 (67.57%), Query Frame = 1
Query:    4 SLQFINYPLLLLAKSCKLVPVMLVGVLMLGRRHTQAEYAAVLLITAGVALFSLKPGTIGEALGREGGGDEDNRF 225
            +LQF+NYP  +L KSCK +PVML+GV +L +++  A+Y  VLLI AGVALF  KP        ++G G +D+ F
Sbjct:   35 ALQFVNYPTQVLGKSCKPIPVMLLGVTVLRKKYPPAKYLCVLLIVAGVALFLYKP--------KKGAGSDDHVF 100          
BLAST of mRNA_H-elongata_contig160441.3875.1 vs. uniprot
Match: UPI00174F5D4C (solute carrier family 35 member B1 isoform X2 n=1 Tax=Pipistrellus kuhlii TaxID=59472 RepID=UPI00174F5D4C)

HSP 1 Score: 67.0 bits (162), Expect = 4.420e-11
Identity = 33/55 (60.00%), Postives = 43/55 (78.18%), Query Frame = 1
Query:    4 SLQFINYPLLLLAKSCKLVPVMLVGVLMLGRRHTQAEYAAVLLITAGVALFSLKP 168
            +LQF+NYP  +L KSCK +PVML+GV +L +R+ +A+Y  VLLI AGVALF  KP
Sbjct:   95 ALQFVNYPTQVLGKSCKPIPVMLLGVTLLKKRYPKAKYLCVLLIVAGVALFMYKP 149          
BLAST of mRNA_H-elongata_contig160441.3875.1 vs. uniprot
Match: E0CZ89_MOUSE (Solute carrier family 35 member B1 (Fragment) n=1 Tax=Mus musculus TaxID=10090 RepID=E0CZ89_MOUSE)

HSP 1 Score: 64.7 bits (156), Expect = 4.550e-11
Identity = 32/55 (58.18%), Postives = 42/55 (76.36%), Query Frame = 1
Query:    4 SLQFINYPLLLLAKSCKLVPVMLVGVLMLGRRHTQAEYAAVLLITAGVALFSLKP 168
            +LQF+NYP  +L KSCK +PVML+GV +L +++  A+Y  VLLI AGVALF  KP
Sbjct:   94 ALQFVNYPTQVLGKSCKPIPVMLLGVTLLKKKYPLAKYLCVLLIVAGVALFMYKP 148          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig160441.3875.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KM40_9PHAE5.840e-2769.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FT27_ECTSI9.720e-2364.84UDP-Glc/Gal endoplasmic reticulum nucleotide sugar... [more]
A0A835ZGA1_9STRA3.590e-1675.00UDP-Glc/Gal endoplasmic reticulum nucleotide sugar... [more]
A0A7S3YET9_HETAK2.070e-1566.67Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A8B7K4D0_9AVES1.220e-1147.30solute carrier family 35 member B1-like n=1 Tax=Ap... [more]
K7F8Z5_PELSI1.480e-1148.68Solute carrier family 35 member B1 n=3 Tax=Cryptod... [more]
A0A7J7U947_PIPKU2.820e-1160.00Solute carrier family 35 member B1 n=5 Tax=Eutheri... [more]
A0A7L1XF44_9AVES3.840e-1148.65S35B1 protein (Fragment) n=2 Tax=Neognathae TaxID=... [more]
UPI00174F5D4C4.420e-1160.00solute carrier family 35 member B1 isoform X2 n=1 ... [more]
E0CZ89_MOUSE4.550e-1158.18Solute carrier family 35 member B1 (Fragment) n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig160441contigH-elongata_contig160441:267..940 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score100.5
Seed ortholog evalue4.3e-19
Seed eggNOG ortholog2880.D7FT27
Preferred nameHUT1
KEGG koko:K15275
KEGG TC2.A.7.11.1,2.A.7.11.4
GOsGO:0000139,GO:0003674,GO:0005215,GO:0005338,GO:0005459,GO:0005460,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0005794,GO:0006810,GO:0006811,GO:0006820,GO:0006950,GO:0006986,GO:0007154,GO:0007165,GO:0007275,GO:0008150,GO:0008509,GO:0008514,GO:0009553,GO:0009555,GO:0009987,GO:0010033,GO:0012505,GO:0015075,GO:0015165,GO:0015711,GO:0015780,GO:0015786,GO:0015931,GO:0015932,GO:0016020,GO:0016021,GO:0022857,GO:0023052,GO:0030173,GO:0030176,GO:0030968,GO:0031090,GO:0031224,GO:0031227,GO:0031228,GO:0031300,GO:0031301,GO:0031984,GO:0032501,GO:0032502,GO:0033554,GO:0034220,GO:0034620,GO:0034976,GO:0035966,GO:0035967,GO:0042175,GO:0042221,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0048229,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051234,GO:0051716,GO:0055085,GO:0065007,GO:0070887,GO:0071310,GO:0071702,GO:0071705,GO:0072334,GO:0090481,GO:0098588,GO:0098656,GO:0098791,GO:0098827,GO:1901264,GO:1901505
EggNOG free text desc.UDP-galactose transmembrane transporter activity
EggNOG OGsCOG0697@1,KOG1581@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000
Hectar predicted targeting categorysignal anchor
Exons2
Model size279
Cds size279
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929941.7565203-CDS-H-elongata_contig160441:266..4731622929941.7565203-CDS-H-elongata_contig160441:266..473Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig160441 267..473 -
1691679216.811945-CDS-H-elongata_contig160441:266..4731691679216.811945-CDS-H-elongata_contig160441:266..473Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig160441 267..473 -
1622929941.7685137-CDS-H-elongata_contig160441:868..9401622929941.7685137-CDS-H-elongata_contig160441:868..940Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig160441 869..940 -
1691679216.8234265-CDS-H-elongata_contig160441:868..9401691679216.8234265-CDS-H-elongata_contig160441:868..940Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig160441 869..940 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig160441.3875.1prot_H-elongata_contig160441.3875.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig160441 267..940 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig160441.3875.1

>prot_H-elongata_contig160441.3875.1 ID=prot_H-elongata_contig160441.3875.1|Name=mRNA_H-elongata_contig160441.3875.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=93bp
WSLQFINYPLLLLAKSCKLVPVMLVGVLMLGRRHTQAEYAAVLLITAGVA
LFSLKPGTIGEALGREGGGDEDNRFVGLSLVRGSIRLVLLHR*
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mRNA from alignment at H-elongata_contig160441:267..940-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig160441.3875.1 ID=mRNA_H-elongata_contig160441.3875.1|Name=mRNA_H-elongata_contig160441.3875.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=674bp|location=Sequence derived from alignment at H-elongata_contig160441:267..940- (Himanthalia elongata Himel1 dioecious)
TGGTCGCTCCAATTCATCAACTATCCGCTACTTCTGCTCGCCAAGAGCTG CAAGCTGGTGCCCGTCATGCTGGTGGGTGTCGCGGGGGCAACAAGAACAA AAGGCACAGGATGTTCGCTCGACGAAATGGGTGGTGCTTCAAAACTAACC TCTTCCTTTTCCCTGTCTCATCCTTCTCTCGACCCGAGGACGACTGGCGA CTGACGCATGATCCAACCGAGGACGACTGACGACTGTATTTGTGTTCATG GAGTGAGGTATCTTGAGCGGCAGGCATGGATGCGTTTGATCCTCCTCCCT CCCCGACCTGCTTTTTTATTATCTTGTTTCTTATTTTCCTTTTTATGTTT AGGAAATGCGCGAGAACGCGCAGTCCTTTTGTCGACCCCTCTTATCCTTT TCGCCCTTCTCTCCTCCTTCAACCAAAACATGTCTAATGGATATCTATAT ATATATATATATTTAAGGTTGGGGTTTTGATGCTGGGAAGGCGGCACACG CAGGCCGAGTATGCGGCGGTACTCCTCATCACGGCAGGGGTGGCGCTTTT CTCCCTCAAGCCCGGAACTATCGGGGAGGCGTTAGGGCGAGAGGGGGGCG GGGATGAAGATAACCGTTTTGTGGGGCTTTCGCTGGTGAGAGGAAGCATT CGTCTTGTCTTGCTGCACAGGTAA
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Coding sequence (CDS) from alignment at H-elongata_contig160441:267..940-

>mRNA_H-elongata_contig160441.3875.1 ID=mRNA_H-elongata_contig160441.3875.1|Name=mRNA_H-elongata_contig160441.3875.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=558bp|location=Sequence derived from alignment at H-elongata_contig160441:267..940- (Himanthalia elongata Himel1 dioecious)
TGGTCGCTCCAATTCATCAACTATCCGCTACTTCTGCTCGCCAAGAGCTG
CAAGCTGGTGCCCGTCATGCTGTGGTCGCTCCAATTCATCAACTATCCGC
TACTTCTGCTCGCCAAGAGCTGCAAGCTGGTGCCCGTCATGCTGGTTGGG
GTTTTGATGCTGGGAAGGCGGCACACGCAGGCCGAGTATGCGGCGGTACT
CCTCATCACGGCAGGGGTGGCGCTTTTCTCCCTCAAGCCCGGAACTATCG
GGGAGGCGTTAGGGCGAGAGGGGGGCGGGGATGAAGATAACCGTTTTGTG
GGGCTTTCGCTGGTGAGAGGAAGCATTCGTCTTGTCTTGCTGCACAGGTA
AGTTGGGGTTTTGATGCTGGGAAGGCGGCACACGCAGGCCGAGTATGCGG
CGGTACTCCTCATCACGGCAGGGGTGGCGCTTTTCTCCCTCAAGCCCGGA
ACTATCGGGGAGGCGTTAGGGCGAGAGGGGGGCGGGGATGAAGATAACCG
TTTTGTGGGGCTTTCGCTGGTGAGAGGAAGCATTCGTCTTGTCTTGCTGC
ACAGGTAA
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