mRNA_H-elongata_contig16013.3863.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig16013.3863.1 vs. uniprot
Match: D7FS53_ECTSI (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS53_ECTSI) HSP 1 Score: 192 bits (488), Expect = 9.060e-60 Identity = 90/135 (66.67%), Postives = 111/135 (82.22%), Query Frame = 1
Query: 1 QLASLVTTLNSCKEFGFDMEAHNARTYHGLTCLLQISTKSKDFIVDPLVEGMWESMTQLRGPFANPDILKIGHSIRSCDIPSLFRDFGIVVVNAFDTEEAVHALGEKHSGLARVLKNAGIEELHDIAGLKHIMQV 405
+L++L LN+C+E+ FD+EAHNARTY+GL CLLQIST+ KD++VDPL EGMW++M LR F NPD+LKIGHSIRS D+PSLFRDFG V+VNA DTEEAVHALG K S L +VL +AG+ E HDIAG+K M+V
Sbjct: 72 KLSALAEDLNACREWSFDVEAHNARTYYGLACLLQISTEWKDYVVDPLAEGMWDNMGLLRDAFGNPDVLKIGHSIRSLDVPSLFRDFGFVIVNAVDTEEAVHALGGKQSALGKVLIDAGVREPHDIAGMKQDMKV 206
BLAST of mRNA_H-elongata_contig16013.3863.1 vs. uniprot
Match: A0A6H5JK06_9PHAE (R3H domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK06_9PHAE) HSP 1 Score: 196 bits (498), Expect = 1.740e-57 Identity = 91/134 (67.91%), Postives = 111/134 (82.84%), Query Frame = 1
Query: 1 QLASLVTTLNSCKEFGFDMEAHNARTYHGLTCLLQISTKSKDFIVDPLVEGMWESMTQLRGPFANPDILKIGHSIRSCDIPSLFRDFGIVVVNAFDTEEAVHALGEKHSGLARVLKNAGIEELHDIAGLKHIMQ 402
+L++L LN+C+E+ FD+EAHNARTYHGL CLLQIST+ KD++VDPL EGMW++M LR F NPD+LKIGHSIRS D+PSLFRDFG V+VNA DTEEAVHALGEK S L +VL NAG+ E HD+AG+K M+
Sbjct: 338 KLSALAEDLNACREWSFDVEAHNARTYHGLVCLLQISTEWKDYVVDPLAEGMWDNMGLLRDAFGNPDVLKIGHSIRSLDVPSLFRDFGFVIVNAVDTEEAVHALGEKQSALEKVLINAGVREPHDMAGMKQDMK 471
BLAST of mRNA_H-elongata_contig16013.3863.1 vs. uniprot
Match: A0A835ZCF0_9STRA (Ribonuclease H-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCF0_9STRA) HSP 1 Score: 126 bits (316), Expect = 1.740e-33 Identity = 57/91 (62.64%), Postives = 73/91 (80.22%), Query Frame = 1
Query: 4 LASLVTTLNSCKEFGFDMEAHNARTYHGLTCLLQISTKSK-DFIVDPLVEGMWESMTQLRGPFANPDILKIGHSIRSCDIPSLFRDFGIVV 273
+A+L L +EF FD+E+H+ R+YHGLTCLLQ+ST + DFIVDPL GMWE+MTQLR FA+PD+LK+GH+I CD+PSL RDFGIV+
Sbjct: 143 VAALAAELTRAREFAFDVESHSYRSYHGLTCLLQVSTDAGGDFIVDPLAPGMWEAMTQLRAVFADPDVLKVGHAISGCDVPSLHRDFGIVM 233
BLAST of mRNA_H-elongata_contig16013.3863.1 vs. uniprot
Match: A0A7S4RSV8_9STRA (Hypothetical protein n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4RSV8_9STRA) HSP 1 Score: 117 bits (294), Expect = 4.050e-28 Identity = 58/118 (49.15%), Postives = 78/118 (66.10%), Query Frame = 1
Query: 40 EFGFDMEAHNARTYHGLTCLLQIST-KSKDFIVDPLVEGMWESMTQLRGPFANPDILKIGHSIRSCDIPSLFRDFGIVVVNAFDTEEAVHALGEKHSGLARVLKNAGIEELHDIAGLK 390
E FD+E HN Y +TCLLQ+ T + KD+++D L G+W++++ L FA+P+I+KIGH I D+PSL RDFGI VVNAFDT EA AL K SGLA + + G+ + A LK
Sbjct: 173 ELAFDLEMHNVSKYMQITCLLQLCTDQGKDYVIDVLAPGVWDAVSLLSPIFADPNIVKIGHCIGGMDVPSLHRDFGIFVVNAFDTYEAARALNYKRSGLATICEQYGLTSSQEYATLK 290
BLAST of mRNA_H-elongata_contig16013.3863.1 vs. uniprot
Match: A0A7S4JXJ1_9STRA (Hypothetical protein n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JXJ1_9STRA) HSP 1 Score: 117 bits (294), Expect = 4.080e-28 Identity = 57/118 (48.31%), Postives = 78/118 (66.10%), Query Frame = 1
Query: 40 EFGFDMEAHNARTYHGLTCLLQISTKS-KDFIVDPLVEGMWESMTQLRGPFANPDILKIGHSIRSCDIPSLFRDFGIVVVNAFDTEEAVHALGEKHSGLARVLKNAGIEELHDIAGLK 390
E FDME +N Y+ TCL+Q+ST + KD+++D L G+WE +T L FANP I+K+GH+I D+P+L RDFG+ VVNAFDT EA L KH+ LA V ++ G+ + A LK
Sbjct: 162 EIAFDMEMYNQSMYNQFTCLIQLSTDAGKDYVIDVLAPGVWEKVTLLAPLFANPSIVKVGHAIGGMDVPALHRDFGVFVVNAFDTYEAARVLRLKHTSLASVCEHYGLRSSSEYATLK 279
BLAST of mRNA_H-elongata_contig16013.3863.1 vs. uniprot
Match: A0A7S2H9Z6_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2H9Z6_9STRA) HSP 1 Score: 112 bits (281), Expect = 2.600e-26 Identity = 57/118 (48.31%), Postives = 77/118 (65.25%), Query Frame = 1
Query: 40 EFGFDMEAHNARTYHGLTCLLQIST-KSKDFIVDPLVEGMWESMTQLRGPFANPDILKIGHSIRSCDIPSLFRDFGIVVVNAFDTEEAVHALGEKHSGLARVLKNAGIEELHDIAGLK 390
E GFD+E HN Y +TCLLQ+ T + KD+++D L G+W++++ L FA+P+I+KIGH I D+ SL RDFGI VVNAFDT EA L K SGLA + + G+ + A LK
Sbjct: 289 EIGFDLEMHNQSKYMQVTCLLQLCTDEGKDYVIDVLAPGVWDAVSLLAPIFADPNIVKIGHCIGGMDVSSLHRDFGIFVVNAFDTYEAARVLNLKRSGLATLCDHYGLRSSEEYALLK 406
BLAST of mRNA_H-elongata_contig16013.3863.1 vs. uniprot
Match: A0A7S1ZMT7_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZMT7_TRICV) HSP 1 Score: 104 bits (259), Expect = 3.170e-26 Identity = 51/115 (44.35%), Postives = 73/115 (63.48%), Query Frame = 1
Query: 16 VTTLNSCKEFGFDMEAHNARTYHGLTCLLQISTK-SKDFIVDPLVEGMWESMTQLRGPFANPDILKIGHSIRSCDIPSLFRDFGIVVVNAFDTEEAVHALGEKHSGLARVLKNAG 357
V + E FD+E HN + +TCLLQ+ST D++VD L G+W++++ L FA+P ++K+GHSI D+PSL RDFGI VVNAFDT EA L K +G+ + ++ G
Sbjct: 11 VAEMTEASEVAFDLEMHNESLHTQITCLLQLSTDLGTDYVVDVLSPGVWDAVSLLAPVFADPKVVKVGHSIGGMDVPSLHRDFGIFVVNAFDTYEAARCLHLKSAGVGKGCEHYG 125
BLAST of mRNA_H-elongata_contig16013.3863.1 vs. uniprot
Match: A0A7S3XKC3_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XKC3_HETAK) HSP 1 Score: 108 bits (271), Expect = 9.600e-26 Identity = 53/120 (44.17%), Postives = 73/120 (60.83%), Query Frame = 1
Query: 4 LASLVTTLNSCKEFGFDMEAHNARTYHGLTCLLQISTKSKDFIVDPLVEGMWESMTQLRGP-FANPDILKIGHSIRSCDIPSLFRDFGIVVVNAFDTEEAVHALGEKHSGLARVLKNAGI 360
L L L++ FGFD+E HN R+YHGLTCLLQ++T ++VDPL G+WE + GP FA+P K+ H R D P+L RDFG+ + + FDT EA +G + GL +L G+
Sbjct: 18 LDELAAHLDTVDVFGFDLEFHNYRSYHGLTCLLQVATARGVWVVDPLAPGVWERVGPALGPAFADPQKAKVAHDARGGDAPALLRDFGVRLCHLFDTHEAARQVGHQRLGLTALLLEYGL 137
BLAST of mRNA_H-elongata_contig16013.3863.1 vs. uniprot
Match: A0A6U2S7D2_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A6U2S7D2_9STRA) HSP 1 Score: 110 bits (276), Expect = 1.130e-25 Identity = 54/131 (41.22%), Postives = 80/131 (61.07%), Query Frame = 1
Query: 1 QLASLVTTLNSCKEFGFDMEAHNARTYHGLTCLLQISTKSKDFIVDPLVEGMWESMTQ-LRGPFANPDILKIGHSIRSCDIPSLFRDFGIVVVNAFDTEEAVHALGEKHSGLARVLKNAGIEELHDIAGLK 390
+L ++ KEF FD+E HN Y+G+ CLLQ++T KD+++D G+W S+ + LR F + ++K+GH+I D+P+L RDFGI VVNAFDT EA L + GLA + + +E + A LK
Sbjct: 248 KLEKCAQEISGAKEFAFDLEMHNPSPYYGMVCLLQLATIEKDYVIDVFAPGVWGSVGRCLRKSFEDSSVVKVGHAIGGMDVPALHRDFGIFVVNAFDTYEAARTLRMEKVGLAALCEYYKLESSEEYAKLK 378
BLAST of mRNA_H-elongata_contig16013.3863.1 vs. uniprot
Match: A0A7S2W175_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W175_9STRA) HSP 1 Score: 108 bits (270), Expect = 7.980e-25 Identity = 61/151 (40.40%), Postives = 84/151 (55.63%), Query Frame = 1
Query: 4 LASLVTTLNSCKEFGFDMEAHNARTYHGLTCLLQISTKS---------------------KDFIVDPLVEGMWESMT-QLRGPFANPDILKIGHSIRSCDIPSLFRDFGIVVVNAFDTEEAVHALGEKHSGLARVLKNAGIEELHDIAGLK 390
L +V L C+ F FD+EA++ R++HG+TCLLQ ST ++F+VD V +W ++ LR F + I K+ HS+ CDIP+LFRDFG+VVVN FDT EA LG+KH LA +L G + +A LK
Sbjct: 209 LEDMVQHLCGCEAFAFDVEANSLRSFHGVTCLLQFSTHGSRPKAPPGAASPPVPTEAFTPRNFVVD--VFALWNELSGALRPLFRDASITKVAHSVTGCDIPALFRDFGVVVVNLFDTYEAARTLGDKHMALASLLMAHGAPKTERMAELK 357 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig16013.3863.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig16013.3863.1 >prot_H-elongata_contig16013.3863.1 ID=prot_H-elongata_contig16013.3863.1|Name=mRNA_H-elongata_contig16013.3863.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=135bp QLASLVTTLNSCKEFGFDMEAHNARTYHGLTCLLQISTKSKDFIVDPLVEback to top mRNA from alignment at H-elongata_contig16013:368..2556+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig16013.3863.1 ID=mRNA_H-elongata_contig16013.3863.1|Name=mRNA_H-elongata_contig16013.3863.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2189bp|location=Sequence derived from alignment at H-elongata_contig16013:368..2556+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig16013:368..2556+ >mRNA_H-elongata_contig16013.3863.1 ID=mRNA_H-elongata_contig16013.3863.1|Name=mRNA_H-elongata_contig16013.3863.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=810bp|location=Sequence derived from alignment at H-elongata_contig16013:368..2556+ (Himanthalia elongata Himel1 dioecious)back to top |