prot_H-elongata_contig160088.3861.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig160088.3861.1
Unique Nameprot_H-elongata_contig160088.3861.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length90
Homology
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BLAST of mRNA_H-elongata_contig160088.3861.1 vs. uniprot
Match: T1EL08_HELRO (Dimer_Tnp_hAT domain-containing protein n=4 Tax=Helobdella robusta TaxID=6412 RepID=T1EL08_HELRO)

HSP 1 Score: 48.5 bits (114), Expect = 1.400e-5
Identity = 25/68 (36.76%), Postives = 38/68 (55.88%), Query Frame = 0 
Query:    3 PADWWVTYGSVDLPDLAKVAIRTTSKIPASAGSERNWSLYGDVVGERHSRMDPERARKLAFVRANLRL 70
            PA WW  + +   P ++KVA    +  P S  SER +S  GD++ E  +R+ P+ A KL F++ N  L
Sbjct:    5 PATWW-KFNTAKYPTISKVAQVYLAPPPTSVPSERLFSTAGDIITEHRTRLLPDNAEKLIFLKYNASL 71
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BLAST of mRNA_H-elongata_contig160088.3861.1 vs. uniprot
Match: T1F2K4_HELRO (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Helobdella robusta TaxID=6412 RepID=T1F2K4_HELRO)

HSP 1 Score: 47.4 bits (111), Expect = 7.750e-5
Identity = 25/68 (36.76%), Postives = 38/68 (55.88%), Query Frame = 0 
Query:    3 PADWWVTYGSVDLPDLAKVAIRTTSKIPASAGSERNWSLYGDVVGERHSRMDPERARKLAFVRANLRL 70
            PA WW  + +   P ++KVA    +  P S  SER +S  GD++ E  +R+ P+ A KL F++ N  L
Sbjct:   36 PATWW-KFNTRKYPTISKVAQVYLAPPPTSVPSERLFSTAGDIITEHRTRLLPDNAEKLIFLKYNASL 102
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig160088.3861.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
T1EL08_HELRO1.400e-536.76Dimer_Tnp_hAT domain-containing protein n=4 Tax=He... [more]
T1F2K4_HELRO7.750e-536.76Dimer_Tnp_hAT domain-containing protein n=1 Tax=He... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008906HAT, C-terminal dimerisation domainPFAMPF05699Dimer_Tnp_hATcoord: 1..68
e-value: 1.5E-5
score: 24.7
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 1..72

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig160088contigH-elongata_contig160088:1012..1281 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig160088.3861.1mRNA_H-elongata_contig160088.3861.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig160088 994..1281 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig160088.3861.1 ID=prot_H-elongata_contig160088.3861.1|Name=mRNA_H-elongata_contig160088.3861.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=90bp
MSPADWWVTYGSVDLPDLAKVAIRTTSKIPASAGSERNWSLYGDVVGERH
SRMDPERARKLAFVRANLRLQRKDFTKRLFIAWDPDSVES
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR008906HATC_C_dom
IPR012337RNaseH-like_sf