mRNA_H-elongata_contig15999.3857.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig15999.3857.1
Unique NamemRNA_H-elongata_contig15999.3857.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig15999.3857.1 vs. uniprot
Match: D7G7C5_ECTSI (Coatomer subunit beta n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7C5_ECTSI)

HSP 1 Score: 682 bits (1760), Expect = 6.920e-238
Identity = 348/370 (94.05%), Postives = 359/370 (97.03%), Query Frame = 1 
Query:   22 QIATLQILCGVAKVIETRSLTHRGAFADCLERVTMCCRTLLDPAAREVLKPTLLELCRESFKQLLDKEKAAQAKQSEELEGRPRSQPDDLINFRQLRSNALHASELDIYDGDDISKATGMDAPDAGRLSHIYQLSGFADPVYAEACVTVHDYDIVLEMLVINRTPNTLTNLTVELSTMGDLRLVERPQSHTIGPLDSRNIRANIKVSSTETGHIFGTIVYENSSTAEKTYINLNDIHMDIMDYIKPASCSEEAFRSMWAEFEWENKVAVNTSLTDLNDFLKHLVAKTNTNCLTPTSSLDGPSSFLAANLYAMSVFGEDALVNVSVEKKSDADGKLSGHVRIRSKTQGIALSLGDRITLVQRGPAASSSQP 1131
            QIATLQILCG+AKVIE RSLTHRGA+ADCLERVTMCCR+LLDPAAR VLKPTLL+LCR+SF+QLLDKEKAAQAKQ+EE+EGRPRSQPDDLINFRQLRSNAL A+ELDIYDGDDISKATGMDAPD GRLSHIYQLSGFADPVYAEACVTVHDYDIVLEMLVINRTPNTLTNLTVELSTMGDLRLVERPQSHTIGPLDSRNIRANIKVSSTETGHIFGTIVYENSSTAEKTYINLNDIHMDIMDYIKPASCSEEAFRSMWAEFEWENKVAVNTS TDLN FLKHLVAKTNTNCLTP SSLDG SSFLAANLYAMSVFGEDALVNVSVEKKSDADGKLSGHVRIRSKTQGIALSLGDRITLVQRGP  + +QP
Sbjct:  598 QIATLQILCGLAKVIEARSLTHRGAYADCLERVTMCCRSLLDPAARAVLKPTLLDLCRQSFQQLLDKEKAAQAKQAEEMEGRPRSQPDDLINFRQLRSNALQAAELDIYDGDDISKATGMDAPDTGRLSHIYQLSGFADPVYAEACVTVHDYDIVLEMLVINRTPNTLTNLTVELSTMGDLRLVERPQSHTIGPLDSRNIRANIKVSSTETGHIFGTIVYENSSTAEKTYINLNDIHMDIMDYIKPASCSEEAFRSMWAEFEWENKVAVNTSFTDLNAFLKHLVAKTNTNCLTPLSSLDGSSSFLAANLYAMSVFGEDALVNVSVEKKSDADGKLSGHVRIRSKTQGIALSLGDRITLVQRGPGTTKAQP 967
[Close]
BLAST of mRNA_H-elongata_contig15999.3857.1 vs. uniprot
Match: A0A835Z7E2_9STRA (Coatomer subunit beta n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7E2_9STRA)

HSP 1 Score: 542 bits (1397), Expect = 2.820e-183
Identity = 282/371 (76.01%), Postives = 316/371 (85.18%), Query Frame = 1 
Query:   22 QIATLQILCGVAKVIETRSLTHRGAFADCLERVTMCCRTLLDPAAREVLKPTLLELCRESFKQLLDKEKAAQAKQSEELEGRPRSQPDDLINFRQLRSNALHASELDIYDGDDISKATGMDA-PDAGRLSHIYQLSGFADPVYAEACVTVHDYDIVLEMLVINRTPNTLTNLTVELSTMGDLRLVERPQSHTIGPLDSRNIRANIKVSSTETGHIFGTIVYENSSTAEKTYINLNDIHMDIMDYIKPASCSEEAFRSMWAEFEWENKVAVNTSLTDLNDFLKHLVAKTNTNCLTPTSSLDGPSSFLAANLYAMSVFGEDALVNVSVEKKSDADGKLSGHVRIRSKTQGIALSLGDRITLVQRGPAASSSQP 1131
            Q+ TLQ+LCGVA+VIE  S THRGAFADC ERVT+CC+ LLDPAAR  L  T+++ CR+S+  LL  EK A A      +G   SQPDDLINFRQLR+  L   E+DIYDGDDI+KATG+ A  D G    IYQLSGF+DPVYAEA VTVHDYDIVLE+LVINRTP TLTNLTVEL+TMGDLRLVERPQ+HTIGPLD R IRANIKVSSTETGHIFGTIV+ENSSTAEK YINL+DIH+DIMDYI+PA+CSEEAFRSMWAEFEWENKV++NT+ TDLN+FL HLVA+TNT CLTPTS+  GPSSFLAANLYA+SVFGEDALVNVSVEKK+DA G L GHVRIRSKTQGIALSLGDRITLVQRG A ++ QP
Sbjct:  590 QVYTLQVLCGVARVIEAASTTHRGAFADCSERVTLCCKLLLDPAARTSLGSTMMDGCRDSYAALLAMEKTALAMAEAAKKGPTLSQPDDLINFRQLRAAGLAGPEVDIYDGDDITKATGLGANADDGNKGRIYQLSGFSDPVYAEANVTVHDYDIVLEILVINRTPQTLTNLTVELATMGDLRLVERPQAHTIGPLDQRTIRANIKVSSTETGHIFGTIVFENSSTAEKAYINLSDIHLDIMDYIRPATCSEEAFRSMWAEFEWENKVSINTTFTDLNEFLAHLVAQTNTTCLTPTSARHGPSSFLAANLYAVSVFGEDALVNVSVEKKADAGGALGGHVRIRSKTQGIALSLGDRITLVQRG-AGATPQP 959
[Close]
BLAST of mRNA_H-elongata_contig15999.3857.1 vs. uniprot
Match: W7TX10_9STRA (Coatomer subunit beta n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TX10_9STRA)

HSP 1 Score: 464 bits (1195), Expect = 8.420e-153
Identity = 248/371 (66.85%), Postives = 294/371 (79.25%), Query Frame = 1 
Query:   22 QIATLQILCGVAKVIETRSLTHRGAFADCLERVTMCCRTLLDPAAREVLKPTLLELCRESFKQLLD--KEKAAQAKQSE--ELEGRPRSQPDDLINFRQLRSNALHASELDIYDGDDISKATGMDA--PDAG----RLSHIYQLSGFADPVYAEACVTVHDYDIVLEMLVINRTPNTLTNLTVELSTMGDLRLVERPQSHTIGPLDSRNIRANIKVSSTETGHIFGTIVYENSSTAEKTYINLNDIHMDIMDYIKPASCSEEAFRSMWAEFEWENKVAVNTSLTDLNDFLKHLVAKTNTNCLTPTSSLDGPSSFLAANLYAMSVFGEDALVNVSVEKKSDADGKLSGHVRIRSKTQGIALSLGDRITLVQR 1104
            Q  TL + CGV ++ E ++  + GA+AD LER+T+C R LLDP +  ++K TLL  C+ S+   L   +E+AA++ ++   E EG   + PD LINFRQLR   +   + D+YDG+DI +ATG  A   + G    RL+H+YQLSG ADPVYAEA VTVHDYDIVLE+LVINRT  TLTNLTVEL+TMGDL+L+ERPQSHTIGP D R IRANIKVSSTETGHIFGTIVYENSSTAEK  +NLNDI MDIMDYI+PASCS+EAFR+MWAEFEWENKVA+NT+  DL  FL H+V+ TN  CLTPTSSL G S+FLAANLYA SVFGEDALVN+SVEKK DADG+LSG+VRIRSKTQGIALSLGDRIT +QR
Sbjct:  599 QAKTLLVACGVGRMAEVKAQGNVGAYADVLERITVCARVLLDPDSLSLVKDTLLTKCKMSYAAFLKFKQEEAAKSDKARQGEKEGGLSALPDALINFRQLRHFGVQTGDFDLYDGEDIQRATGAGAVKDEVGDWSKRLAHVYQLSGLADPVYAEAYVTVHDYDIVLEILVINRTKATLTNLTVELATMGDLKLIERPQSHTIGPQDQRIIRANIKVSSTETGHIFGTIVYENSSTAEKGTVNLNDIQMDIMDYIRPASCSDEAFRAMWAEFEWENKVAINTTFLDLQAFLTHVVSSTNMECLTPTSSLSGESAFLAANLYAKSVFGEDALVNLSVEKKDDADGRLSGYVRIRSKTQGIALSLGDRITAIQR 969
[Close]
BLAST of mRNA_H-elongata_contig15999.3857.1 vs. uniprot
Match: A0A7S2YIL5_9STRA (Coatomer subunit beta n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YIL5_9STRA)

HSP 1 Score: 462 bits (1188), Expect = 2.360e-152
Identity = 238/361 (65.93%), Postives = 286/361 (79.22%), Query Frame = 1 
Query:   43 LCGVAKVIETRSLTHRGAFADCLERVTMCCRTLLDPAAREVLKPTLLELCRESFKQLL----DKEKAAQAKQSEELEGRPRSQPDDLINFRQLRSNALHASELDIYDGDDISKATGMDAPDA--GRLSHIYQLSGFADPVYAEACVTVHDYDIVLEMLVINRTPNTLTNLTVELSTMGDLRLVERPQSHTIGPLDSRNIRANIKVSSTETGHIFGTIVYENSSTAEKTYINLNDIHMDIMDYIKPASCSEEAFRSMWAEFEWENKVAVNTSLTDLNDFLKHLVAKTNTNCLTPTSSLDGPSSFLAANLYAMSVFGEDALVNVSVEKKSDADGKLSGHVRIRSKTQGIALSLGDRITLVQRG 1107
            +CGV K+ E      R + ADC ER+T+CCR LLDPAA+  LK   L+  RE F + L    ++E    A +S + E    +Q DDLI+FRQL++ A  A +LD+ DG D+++ATG D+  A    LSH+YQLSGFADPVYAEA VTVHDYDIVLE+LV+NRTPNTL NLTVELSTMGD+++VERPQSHTIGPLD   IRA+IKVSSTETGHIFGTIVY++++T EK Y+NLNDIHMDIMDYI+PA+C++EAFRSMWAEFEWENKVA++TS+T L +FL H+V+ TN +CLTP        SFLAANLYA SVFGEDALVNVSVEKK D DGKL+G++RIRSKTQGIALSLGDRIT VQRG
Sbjct:  558 MCGVVKMAEVTVAAQRSSLADCQERITLCCRALLDPAAQMHLKKIFLKEGRERFAEFLKIIKERELKESATESGDKENEVTTQADDLIHFRQLKAMAASAGDLDLDDGADLARATGYDSAGALSSELSHVYQLSGFADPVYAEALVTVHDYDIVLEILVMNRTPNTLANLTVELSTMGDMKIVERPQSHTIGPLDQMTIRASIKVSSTETGHIFGTIVYDDAATMEKCYVNLNDIHMDIMDYIRPATCTDEAFRSMWAEFEWENKVAISTSITSLLEFLNHIVSSTNMSCLTPFDEKSEKGSFLAANLYARSVFGEDALVNVSVEKKDDNDGKLAGYIRIRSKTQGIALSLGDRITSVQRG 918
[Close]
BLAST of mRNA_H-elongata_contig15999.3857.1 vs. uniprot
Match: B7FZV8_PHATC (Coatomer subunit beta n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FZV8_PHATC)

HSP 1 Score: 461 bits (1187), Expect = 1.280e-151
Identity = 238/361 (65.93%), Postives = 287/361 (79.50%), Query Frame = 1 
Query:   40 ILCGVAKVIETRSLTHRGAFADCLERVTMCCRTLLDPAAREVLKPTLLELCRESFKQLLD--KEKAAQAKQSEELEGRPRSQPDDLINFRQLRSNALHASELDIYDGDDISKATGMDAPDA---GRLSHIYQLSGFADPVYAEACVTVHDYDIVLEMLVINRTPNTLTNLTVELSTMGDLRLVERPQSHTIGPLDSRNIRANIKVSSTETGHIFGTIVYENSSTAEKTYINLNDIHMDIMDYIKPASCSEEAFRSMWAEFEWENKVAVNTSLTDLNDFLKHLVAKTNTNCLTPTSSLDGPSSFLAANLYAMSVFGEDALVNVSVEKKSDADGKLSGHVRIRSKTQGIALSLGDRITLVQRG 1107
            ++CGV K+ E      R + +DC ER+T+CCR L+DP A+E+LKPTLLE  R  F + L   K+K A+  + +E +    +Q DDLI+FRQL+S A+ A +LD+ DG D+++ATG D   +     LSH+YQLSGFADPVYAEA VTVHDYDIVLE+LVINRTPNTL NLTVEL+TMGD+++VERPQ+HTIGPLD   IRA+IKVSSTETGHIFGTIVYE+++T EK Y+NLNDIHMDIMDYI+PASC++E FRSMWAEFEWENKVA++TS+  L  FL H+V  TN  CLTP    +   SFLAANLYA SVFGEDALVNVSVEKK D DGKL+G++RIRSKTQGIALSLGDRIT VQRG
Sbjct:  611 VMCGVVKMAEVTIAAQRTSLSDCQERITLCCRALIDPKAQELLKPTLLEGGRARFGEFLKILKDKEAKENKKKESDKEITTQADDLIHFRQLKSMAVQAGDLDLDDGSDLARATGYDNAGSLLSSELSHVYQLSGFADPVYAEALVTVHDYDIVLEILVINRTPNTLANLTVELATMGDMKIVERPQAHTIGPLDQVTIRASIKVSSTETGHIFGTIVYEDAATREKAYVNLNDIHMDIMDYIRPASCTDEVFRSMWAEFEWENKVAISTSIASLLGFLSHIVKSTNMTCLTPHDKTE-KGSFLAANLYARSVFGEDALVNVSVEKKDDNDGKLAGYIRIRSKTQGIALSLGDRITSVQRG 970
[Close]
BLAST of mRNA_H-elongata_contig15999.3857.1 vs. uniprot
Match: A0A812U1M7_SYMMI (Hypothetical protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812U1M7_SYMMI)

HSP 1 Score: 450 bits (1158), Expect = 2.750e-151
Identity = 232/376 (61.70%), Postives = 291/376 (77.39%), Query Frame = 1 
Query:   31 TLQILCGVAKVIETRSLTHRGAFADCLERVTMCCRTLLDPAAREVLKPTLLELCRESFKQLLDKEKAAQAKQSEELEGRPRSQPDDLINFRQLRSNALHAS-ELDIYDGDDISKATGMDAPDA---GRLSHIYQLSGFADPVYAEACVTVHDYDIVLEMLVINRTPNTLTNLTVELSTMGDLRLVERPQSHTIGPLDSRNIRANIKVSSTETGHIFGTIVYENSSTAEKTYINLNDIHMDIMDYIKPASCSEEAFRSMWAEFEWENKVAVNTSLTDLNDFLKHLVAKTNTNCLTPTSSLDGPSS----FLAANLYAMSVFGEDALVNVSVEKKSDADGKLSGHVRIRSKTQGIALSLGDRITLVQR-GPAASSSQP 1131
            +L +  GV K+ E ++ +  G  ADCL+R++ CCR L+DP  RE L    L  CRESF  ++ K+KAA+ + +E  +    SQ DDLI FRQL + A+    E+D+ D DDIS+ATG DA       +L H++QL+G++DPVYAEA VTVHDYDI+L++LVINRTPNTLTNLTVEL+TMGDL++VERPQ+HTIGPLD R +RANIKVSSTETGHIFGTIV++N+STA+KTY+NL+DI +DIMDYI+PA C  E FR+MWAEFEWENKVAVNT++ +L DFL H++  TNT C+TP     G +S    FLAANLYA SVFGEDALVNVSVE+K DADG L+G++RIRSKTQGIALSLGDRIT +QR   + +S QP
Sbjct:  270 SLLVCAGVGKMAEAKTKSRHGIHADCLDRLSQCCRVLIDPVVREKLGDAWLTSCRESFTSIVTKQKAAKHRATELDKMSRASQADDLIQFRQLHAQAVQGGIEVDLMDADDISRATGADATSQDSKNKLPHVHQLTGYSDPVYAEASVTVHDYDIILDILVINRTPNTLTNLTVELATMGDLKVVERPQAHTIGPLDERRMRANIKVSSTETGHIFGTIVFDNASTAQKTYVNLSDIQLDIMDYIRPAECKSEDFRAMWAEFEWENKVAVNTNIKELKDFLSHVITHTNTTCITPIDDQTGIASAGSHFLAANLYACSVFGEDALVNVSVERKDDADGSLAGYIRIRSKTQGIALSLGDRITSIQRIVKSVTSDQP 645
[Close]
BLAST of mRNA_H-elongata_contig15999.3857.1 vs. uniprot
Match: A0A7S2HW59_9STRA (Coatomer subunit beta n=5 Tax=Lithodesmiaceae TaxID=49247 RepID=A0A7S2HW59_9STRA)

HSP 1 Score: 457 bits (1176), Expect = 3.150e-150
Identity = 241/367 (65.67%), Postives = 289/367 (78.75%), Query Frame = 1 
Query:   25 IATLQILCGVAKVIETRSLTHRGAFADCLERVTMCCRTLLDPAAREVLKPTLLELCRESFKQLLDKEKAAQAKQSE-ELEGRPRSQPDDLINFRQLRSNALHASELDIYDGDDISKATGMDAPDAG-----RLSHIYQLSGFADPVYAEACVTVHDYDIVLEMLVINRTPNTLTNLTVELSTMGDLRLVERPQSHTIGPLDSRNIRANIKVSSTETGHIFGTIVYENSSTAEKTYINLNDIHMDIMDYIKPASCSEEAFRSMWAEFEWENKVAVNTSLTDLNDFLKHLVAKTNTNCLTPTSSLDGPSSFLAANLYAMSVFGEDALVNVSVEKKSDADGKLSGHVRIRSKTQGIALSLGDRITLVQRG 1107
            + +L I+CG+ K+ E      + + ADC ER+ +CCR LLDP A+EVLK T L   +  F + L+  K  +AK+++ + E  P +QPDDLI+FRQLRS A+   ++D+ DG D+++ATG    D G      LSH+YQLSG+ADPVYAEA VTVHDYDI LE+LVINRTPNTL NLTVELSTMGD+++VERPQS TIGPLD   IRA+IKVSSTETGHIFGTIVYE++ST EK YINLNDIHMDIMDYI+PA+C++E FRSMWAEFEWENKVA++TS+TDL  FL H+V  TN  CLTP    +  SSFLAANLYA SVFGEDALVNVSVEKK D DGKL+G++RIRSKTQGIALSLGDRIT VQRG
Sbjct:  585 VKSLLIMCGIVKMAEATVSAQKSSLADCSERIALCCRALLDPKAKEVLKNTFLTEGKAKFAEFLNAVKEKEAKETKKDDEEVPTTQPDDLIHFRQLRSMAVQGGDMDLDDGSDLARATGY--TDGGSLLSSELSHVYQLSGYADPVYAEAAVTVHDYDIRLEILVINRTPNTLANLTVELSTMGDMKIVERPQSQTIGPLDQITIRASIKVSSTETGHIFGTIVYEDTSTQEKGYINLNDIHMDIMDYIRPATCTDEIFRSMWAEFEWENKVAISTSITDLFTFLNHIVESTNMCCLTPHDEKE-KSSFLAANLYARSVFGEDALVNVSVEKKDDNDGKLAGYIRIRSKTQGIALSLGDRITSVQRG 948
[Close]
BLAST of mRNA_H-elongata_contig15999.3857.1 vs. uniprot
Match: A0A7S1UYW3_9STRA (Coatomer subunit beta n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1UYW3_9STRA)

HSP 1 Score: 455 bits (1171), Expect = 6.320e-150
Identity = 240/371 (64.69%), Postives = 288/371 (77.63%), Query Frame = 1 
Query:   19 FQIATLQILCGVAKVIETRSLTHRGAFADCLERVTMCCRTLLDPAAREVLKPTLLELCRESFKQLL-----DKEKAAQAKQSEELEGRPRSQPDDLINFRQLRSNALHASELDIYDGDDISKATGMDAPDA---GRLSHIYQLSGFADPVYAEACVTVHDYDIVLEMLVINRTPNTLTNLTVELSTMGDLRLVERPQSHTIGPLDSRNIRANIKVSSTETGHIFGTIVYENSSTAEKTYINLNDIHMDIMDYIKPASCSEEAFRSMWAEFEWENKVAVNTSLTDLNDFLKHLVAKTNTNCLTPTSSLDGPSSFLAANLYAMSVFGEDALVNVSVEKKSDADGKLSGHVRIRSKTQGIALSLGDRITLVQRG 1107
            + + +L ++C + KV E      R + +DC ER+T+CCR LLDP A+E+LKP+LL   + +F   L     D +KA + K  +   G P +Q DDLI+FRQLR+ A+   ++D+ DG D+++ATG D   +     LSH+Y LSGFADPVYAEA VTVHDYDIVLE+LVINRTPNTL+NLTVELSTMGD+++VERPQ+HTIGPLD   IRA+IKVSSTETGHIFGTIVYE+SST EK YINLNDIHMDIMDYI+PA C++EAFRSMWAEFEWENKVA+ TS+ DL  FL H+V  TN  CLTP    +   SFLAANLYA SVFGEDALVNVSVEKK D DGKL+G++RIRSKTQGIALSLGDRIT VQRG
Sbjct:  542 WTVDSLLMMCAIVKVAEVTVNAQRSSLSDCTERMTLCCRALLDPKAKELLKPSLLNDGKATFATFLASLKQDDKKAGEDKDGDAAAG-PTTQADDLIHFRQLRNMAVQGGDVDLDDGADLARATGYDNAGSLLESELSHVYPLSGFADPVYAEALVTVHDYDIVLEILVINRTPNTLSNLTVELSTMGDMKIVERPQAHTIGPLDQMTIRASIKVSSTETGHIFGTIVYEDSSTMEKGYINLNDIHMDIMDYIRPAFCTDEAFRSMWAEFEWENKVAIATSIEDLKVFLNHIVTSTNMTCLTPHDPKER-GSFLAANLYARSVFGEDALVNVSVEKKDDNDGKLAGYIRIRSKTQGIALSLGDRITSVQRG 910
[Close]
BLAST of mRNA_H-elongata_contig15999.3857.1 vs. uniprot
Match: A0A7S2V1X2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V1X2_9STRA)

HSP 1 Score: 429 bits (1103), Expect = 9.960e-148
Identity = 230/312 (73.72%), Postives = 259/312 (83.01%), Query Frame = 1 
Query:  229 AAQAKQSEE----LEGRPRSQPDDLINFRQLRSN---ALHASELD-IYDGDDISKATGMD--APDAGRLSHIYQLSGFADPVYAEACVTVHDYDIVLEMLVINRTPNTLTNLTVELSTMGDLRLVERPQSHTIGPLDSRNIRANIKVSSTETGHIFGTIVYENSSTAEKTYINLNDIHMDIMDYIKPAS-CSEEAFRSMWAEFEWENKVAVNTSLTDLNDFLKHLVAKTNTNCLTPTSSLDGPSSFLAANLYAMSVFGEDALVNVSVEKKSDADGKLSGHVRIRSKTQGIALSLGDRITLVQRGPAASSSQP 1131
            A +AKQ EE    +    R+QPDDLI FRQLR+    A    ELD + DGDD+ +A G +  A    +LSH+YQLSGFADPVYAEA VTVHDYDIVLE+LVINRTPNTLTNLTVEL+TMGDL+LVERPQS+TIGPLD R IRANIKVSSTETGH+FGTIVYENSSTA+K YINLNDIH+DIMDYI P+S C+++AFR MW EFEWENKVA+NTS  +L+ +L HLVA TN  CLTPTSSL G SSFLAANLYA S+FGED LVNVSVEKK DADGKLSG+VRIRSKTQGIALSLGDRITLVQRGP  ++ QP
Sbjct:    3 ARRAKQKEEDTQEVSEALRAQPDDLITFRQLRATRGAAGTTKELDAVMDGDDLGRAVGANQLAGQGSKLSHVYQLSGFADPVYAEALVTVHDYDIVLEILVINRTPNTLTNLTVELATMGDLKLVERPQSYTIGPLDQRTIRANIKVSSTETGHVFGTIVYENSSTAQKAYINLNDIHLDIMDYIYPSSNCTDDAFRRMWEEFEWENKVAINTSFDELSAYLSHLVAHTNMACLTPTSSLGGQSSFLAANLYAKSIFGEDVLVNVSVEKKDDADGKLSGYVRIRSKTQGIALSLGDRITLVQRGPLKATPQP 314
[Close]
BLAST of mRNA_H-elongata_contig15999.3857.1 vs. uniprot
Match: K0SE22_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SE22_THAOC)

HSP 1 Score: 447 bits (1150), Expect = 3.190e-146
Identity = 233/365 (63.84%), Postives = 281/365 (76.99%), Query Frame = 1 
Query:   25 IATLQILCGVAKVIETRSLTHRGAFADCLERVTMCCRTLLDPAAREVLKPTLLELCRESFKQLLDKEKAAQAKQSEELEGRPRSQPDDLINFRQLRSNALHASELDIYDGDDISKATGMDAPDAG-----RLSHIYQLSGFADPVYAEACVTVHDYDIVLEMLVINRTPNTLTNLTVELSTMGDLRLVERPQSHTIGPLDSRNIRANIKVSSTETGHIFGTIVYENSSTAEKTYINLNDIHMDIMDYIKPASCSEEAFRSMWAEFEWENKVAVNTSLTDLNDFLKHLVAKTNTNCLTPTSSLDGPSSFLAANLYAMSVFGEDALVNVSVEKKSDADGKLSGHVRIRSKTQGIALSLGDRITLVQR 1104
            + +L  +CG+ K+ E  +   + + ADC +RV++CCR LLDP A  +LKPTLLE  + SF   L   +    ++ E  E    +Q DDLI+FRQLRS      +LD+ DG D+++ATG    D G      LSH+YQLSGFADPVYAEA V VHDYDI+LE+L+INRTPNTL NLTVELSTMGD+++VERPQS TIGPLD   IRA+IKVSSTETGHIFGTIVYE+++T EK Y+NLNDIHMDIMDYI+PA+C++E FRSMWAEFEWENKVA++TS+ DL  FL H+V+ TN  CLTP  +  G  SFLAANLYA SVFGEDALVNVSVEKK D DGKL+G++RIRSKTQGIALSLGDRIT VQR
Sbjct:  601 VKSLLAMCGIVKMAEVSATAQKSSLADCSDRVSLCCRALLDPKATALLKPTLLEEGKSSFAAFLRNVQDKSGEKDESKEDEVTTQADDLIHFRQLRSLTAQGGDLDLDDGSDLARATGY--TDGGSALTNELSHVYQLSGFADPVYAEAFVRVHDYDILLEILIINRTPNTLANLTVELSTMGDMKIVERPQSQTIGPLDQMTIRASIKVSSTETGHIFGTIVYEDAATQEKGYVNLNDIHMDIMDYIRPATCTDEVFRSMWAEFEWENKVAISTSIGDLVQFLDHIVSSTNMTCLTPHGNEKG--SFLAANLYAKSVFGEDALVNVSVEKKDDNDGKLAGYIRIRSKTQGIALSLGDRITSVQR 961
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig15999.3857.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G7C5_ECTSI6.920e-23894.05Coatomer subunit beta n=1 Tax=Ectocarpus siliculos... [more]
A0A835Z7E2_9STRA2.820e-18376.01Coatomer subunit beta n=1 Tax=Tribonema minus TaxI... [more]
W7TX10_9STRA8.420e-15366.85Coatomer subunit beta n=3 Tax=Monodopsidaceae TaxI... [more]
A0A7S2YIL5_9STRA2.360e-15265.93Coatomer subunit beta n=1 Tax=Amphiprora paludosa ... [more]
B7FZV8_PHATC1.280e-15165.93Coatomer subunit beta n=2 Tax=Phaeodactylum tricor... [more]
A0A812U1M7_SYMMI2.750e-15161.70Hypothetical protein n=1 Tax=Symbiodinium microadr... [more]
A0A7S2HW59_9STRA3.150e-15065.67Coatomer subunit beta n=5 Tax=Lithodesmiaceae TaxI... [more]
A0A7S1UYW3_9STRA6.320e-15064.69Coatomer subunit beta n=1 Tax=Grammatophora oceani... [more]
A0A7S2V1X2_9STRA9.960e-14873.72Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
K0SE22_THAOC3.190e-14663.84Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig15999contigH-elongata_contig15999:111..5075 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score686.8
Seed ortholog evalue5.7e-195
Seed eggNOG ortholog2880.D7G7C5
Preferred nameCOPB1
KEGG koko:K17301
GOsGO:0000139,GO:0000902,GO:0001775,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0005794,GO:0005798,GO:0005829,GO:0005886,GO:0006810,GO:0006886,GO:0006887,GO:0006888,GO:0006890,GO:0006891,GO:0006955,GO:0007275,GO:0008104,GO:0008150,GO:0009653,GO:0009790,GO:0009888,GO:0009987,GO:0010883,GO:0012505,GO:0012506,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016192,GO:0030117,GO:0030120,GO:0030126,GO:0030133,GO:0030134,GO:0030135,GO:0030137,GO:0030141,GO:0030659,GO:0030660,GO:0030662,GO:0030663,GO:0030667,GO:0030903,GO:0031090,GO:0031410,GO:0031982,GO:0031984,GO:0032501,GO:0032502,GO:0032879,GO:0032940,GO:0032989,GO:0032991,GO:0033036,GO:0034613,GO:0036230,GO:0042119,GO:0042175,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043299,GO:0043312,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044432,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0045055,GO:0045184,GO:0045321,GO:0046903,GO:0046907,GO:0048193,GO:0048471,GO:0048475,GO:0048513,GO:0048568,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050896,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0060429,GO:0061053,GO:0065007,GO:0065008,GO:0070727,GO:0070820,GO:0070821,GO:0071702,GO:0071705,GO:0071840,GO:0071944,GO:0097708,GO:0098588,GO:0098791,GO:0098796,GO:0098805,GO:0098827,GO:0099503,GO:0101002,GO:0101003,GO:1905952
EggNOG free text desc.intracellular protein transport
EggNOG OGsCOG5096@1,KOG1058@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131,ko04147
Hectar predicted targeting categorysignal peptide
Exons8
Model size1134
Cds size1134
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig15999.3857.1prot_H-elongata_contig15999.3857.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig15999 111..5075 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929939.924401-CDS-H-elongata_contig15999:110..2271622929939.924401-CDS-H-elongata_contig15999:110..227Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15999 111..227 +
1691679216.0416262-CDS-H-elongata_contig15999:110..2271691679216.0416262-CDS-H-elongata_contig15999:110..227Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15999 111..227 +
1622929939.9424527-CDS-H-elongata_contig15999:777..9061622929939.9424527-CDS-H-elongata_contig15999:777..906Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15999 778..906 +
1691679216.053683-CDS-H-elongata_contig15999:777..9061691679216.053683-CDS-H-elongata_contig15999:777..906Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15999 778..906 +
1622929939.9544644-CDS-H-elongata_contig15999:1295..14141622929939.9544644-CDS-H-elongata_contig15999:1295..1414Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15999 1296..1414 +
1691679216.0615957-CDS-H-elongata_contig15999:1295..14141691679216.0615957-CDS-H-elongata_contig15999:1295..1414Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15999 1296..1414 +
1622929939.9681873-CDS-H-elongata_contig15999:1787..19141622929939.9681873-CDS-H-elongata_contig15999:1787..1914Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15999 1788..1914 +
1691679216.069208-CDS-H-elongata_contig15999:1787..19141691679216.069208-CDS-H-elongata_contig15999:1787..1914Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15999 1788..1914 +
1622929939.9825058-CDS-H-elongata_contig15999:2815..29591622929939.9825058-CDS-H-elongata_contig15999:2815..2959Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15999 2816..2959 +
1691679216.0765965-CDS-H-elongata_contig15999:2815..29591691679216.0765965-CDS-H-elongata_contig15999:2815..2959Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15999 2816..2959 +
1622929940.0013926-CDS-H-elongata_contig15999:3126..33091622929940.0013926-CDS-H-elongata_contig15999:3126..3309Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15999 3127..3309 +
1691679216.0838485-CDS-H-elongata_contig15999:3126..33091691679216.0838485-CDS-H-elongata_contig15999:3126..3309Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15999 3127..3309 +
1622929940.0164502-CDS-H-elongata_contig15999:3711..38281622929940.0164502-CDS-H-elongata_contig15999:3711..3828Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15999 3712..3828 +
1691679216.0911655-CDS-H-elongata_contig15999:3711..38281691679216.0911655-CDS-H-elongata_contig15999:3711..3828Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15999 3712..3828 +
1622929940.0336475-CDS-H-elongata_contig15999:4877..50751622929940.0336475-CDS-H-elongata_contig15999:4877..5075Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15999 4878..5075 +
1691679216.0988405-CDS-H-elongata_contig15999:4877..50751691679216.0988405-CDS-H-elongata_contig15999:4877..5075Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15999 4878..5075 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig15999.3857.1

>prot_H-elongata_contig15999.3857.1 ID=prot_H-elongata_contig15999.3857.1|Name=mRNA_H-elongata_contig15999.3857.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=378bp
MLFLLLFQIATLQILCGVAKVIETRSLTHRGAFADCLERVTMCCRTLLDP
AAREVLKPTLLELCRESFKQLLDKEKAAQAKQSEELEGRPRSQPDDLINF
RQLRSNALHASELDIYDGDDISKATGMDAPDAGRLSHIYQLSGFADPVYA
EACVTVHDYDIVLEMLVINRTPNTLTNLTVELSTMGDLRLVERPQSHTIG
PLDSRNIRANIKVSSTETGHIFGTIVYENSSTAEKTYINLNDIHMDIMDY
IKPASCSEEAFRSMWAEFEWENKVAVNTSLTDLNDFLKHLVAKTNTNCLT
PTSSLDGPSSFLAANLYAMSVFGEDALVNVSVEKKSDADGKLSGHVRIRS
KTQGIALSLGDRITLVQRGPAASSSQP*
back to top

mRNA from alignment at H-elongata_contig15999:111..5075+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig15999.3857.1 ID=mRNA_H-elongata_contig15999.3857.1|Name=mRNA_H-elongata_contig15999.3857.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=4965bp|location=Sequence derived from alignment at H-elongata_contig15999:111..5075+ (Himanthalia elongata Himel1 dioecious)
ATGCTCTTTCTCTTGCTCTTTCAGATCGCCACGCTCCAGATTCTGTGTGG
CGTGGCCAAGGTCATCGAGACGCGCAGCCTTACGCACAGGGGGGCCTTTG
CCGACTGCTTGGAGCGGGTGGGGCGTGTAGGGGAATTACGAATCACATGG
AGCGTCGCGTGTCGCATGTGTGGCGTGTGTCTTTCGCCTTCAAACAGCAG
AGTGCAGTATAATTCTGGATATTGAAGTATAGTATAGTATAATATAGTAC
AACAGCCGTTTCGCGCCGAGGCATGTTGCCGGAGCAGAGCGCTTCAACGA
CGCACGATATTTTCGACGCGGTCGATGCCAACAAGAAACGCCACAACCCA
ACCACATCCCAGGGCGTCTCACAAGGCCGTCGATGCTCATCGCGTGCATG
CGGCCTCTACTGAAGGGGTATCTTGACCACCCTGTTCACCCAGGGTGCCT
CCGAGGGTGATGCTGTCGCCATCGCAATTTTTGTATTTTATCTTAATCTT
AGTGTATAGCTATAGTCTAGCTCCACTTCTTCTCTATATACCTACCTATC
CCTTGTGACGTCAATTTACCTACCTGCCTTCCTCTCTGCCTATCGCCCCG
CCTCGAGAACGCCACACAGATGCTATAAACCGCATATTGTTTATTTTCTC
TTCGTTCTCCCCGTCAGGTGACCATGTGCTGCCGTACCCTCTTGGACCCG
GCGGCGAGGGAGGTGCTGAAGCCTACGTTGCTCGAGCTGTGCCGTGAGAG
CTTCAAGCAGCTACTAGACAAGGAAAAAGCGGCGCAGGCCAAGCAGGTGG
GCTGATAGTGTTTATATATATGTGTGTGTGTGTGTGTGATAGTTCATTAG
CCGATAATGGTGTAATGTTTTGCGTGTTTAATATGGTATATTTTTGTCCT
TAATTGTGCTATATTACTAGTATTAACCCTTCTGGAACCGGATTTGAAGT
TTTATATTGAATTTAATATTGTAAAAAAACAGATCGAGTTCCTTAAGGGT
TAATTAACTCTCTTGTTTTTTTCTTTTAGATTTTTTCTCATGTTTAACGA
TGATTAAAAAATAGTTGCTGCTCTGGAATAATTATGTTGTGGGCATGTTT
GTTGGTTCTCTATTGATATTGTCATACTCTCTCTTTGCTGCGATTACTTT
TGGGTCCCGCCTGTTTGCATGCTTTACGTGTTCAGTCGGAAGAGCTGGAG
GGGCGGCCTAGGAGCCAGCCGGACGACCTCATCAACTTCCGACAGCTGCG
CAGCAACGCCCTGCATGCCTCGGAGCTCGACATCTACGACGGTGACGACA
TCAGGTCATGAATCCATCCGTCAATTCATCTTGGAGTTCGTGGAGTTTCT
CAAGCGTATTGTCTGGATTCGACTGGACTGGACTGGACTAATCTGATTTG
TGCACTGAGCACCACGATAGAACCTTAAATCCTCGCTGCAGTCTCCACAC
GAGACTGGCTGTCTGACTGGCTTGCTGGCTTGTTGTCTGTCTAACTTGGC
TTGTTGTCGGTGATACGATGATACGATGACGATGCCATGTTATGCCATGT
TATGCCATGTATTATCGGGCTCGCGGTTCTCGGGGTTAAATGGTCCCACG
TATCAACATTAGTATACTCTGGTATTCCGATCGTTCCGATACGTGTCGGC
TGTCTACCGTTGGATTTCTGCCCACAGCAAGGCGACGGGGATGGACGCAC
CTGACGCAGGACGGCTTAGCCACATCTACCAGCTCTCGGGCTTCGCCGAC
CCGGTGTATGCGGAGGCTTGCGTCACCGTGCATGACTACGACATCGTTCT
GGAGGTGAGGTGTGCGCGACTAGGACGTCGTTCTCTCTATTTACTGTCGA
TAGGAAAAAACATATATACAGTCTCTAAAATATTATTTCGAACACATTCC
GGCAGTTTGTACGGTATCGCCGTATCGTTGTTGTCGTTTTGACTATAAAC
AAGATAAACAAAGCCCCCCCCCCCTCCCATTTGTTATCGAATAAAATATG
AACTATAAATATATGCAGTATCTTAATAGTAATAGTGCATTAAAGAGAGA
GATAGACTAATATATATAGAGAGAGGGAGACTAATCCGATACTGTACTGT
CTGTTACTGTATCGTACACGCCTACTTGCCAATAGCGGGTGTGGGATAAT
AGAGTTAGAGGCGTACGATAATTGGTCCATGGGGTTACCTGAAAAGGCCA
CACCCGTTCCTCGAGCTACCTTGAGGACTATTGGCTCAGTGCCGGCGGAC
TCTCGGTAGTAAACGCCATCGGTACTGTAGCAATTGCGTGACCTGATGAA
ATCGAGATTGGCCCGATGGCGGTTGACGGTAGAGATGGATGCCGTCGCGG
AAAACGGAAGGATCGAGAGAATCACGGGAGTACGCACCAGATTCAGCCTG
AATTGGGAGAATGATTAGGCTGACGCTGGACGGGACTGCTGAACCCGTCT
TGCGAGACCAAATCTCAGGCGCGAACGGGGACTGGGGAAAATTCCTTTTT
CCTTTTTGTCAATTTACATTAGACCGCGTTAAGGGGGGGCCACGCCGGTT
TGCGACCCCCCCCCCAATTGTGGGTAGCTATTTTCCCTTTATGGTCCCTG
TTCAGCTGACCACGAGCAGAAGGGAACCAAATTCGGTTGATGTTGATGTT
GATGTTGATCTTACTCTTACCCCCAAATCTCTTCTCTGCTGTATGTGCTG
GGCAGATGCTGGTGATTAACCGCACCCCAAATACTCTGACCAACCTCACC
GTCGAGCTGTCTACCATGGGAGACCTCCGACTCGTGGAGCGGCCACAGTC
GCACACCATCGGTCCGCTCGACTCTCGCAACATCCGCGCCAACATCAAGG
TCAGTCGGGCGCCGATACGCTCTCTCTCTACCCCCAGCCACCGCCGCTAT
CAATAGCCAATAGCTAATAGCCCATAGCTACCAATAGCTCATCGCCAGAA
AGGGATGGAACTCTATTGAGAACACATCAAATCGTGTCCTATTTTGTATT
GTATATATCTTAAAAGGTGAGCAGCACGGAGACGGGTCATATCTTCGGGA
CTATCGTGTACGAAAACAGCTCCACGGCGGAGAAGACCTACATTAACCTC
AACGACATCCACATGGACATCATGGATTACATCAAGCCCGCCTCCTGCAG
CGAGGAGGCCTTCCGTTCCATGTGGGCAGAGTTCGAGTGGGAGAACAAGG
TGCGTCGGAGAGAGAGGAATTGCGTCGAGCACTCGTCGATTTTTTTTATT
TTGCTTCGTTTTTTTAATGGGTTCGGGGTGAAAAAGCGCTTAAAACTCGT
TTTTCTAAAAAAACATATGGACTCAATCAAACCCTCCGAACATCCACACT
ATATTCTATATACTATATAGTGTATTGTGTATTATATTGGATTGTGTTTT
GTGGAGAGTGGATGGTGCATTGTCGGGGTTGGGACAAACATCGCAAAACT
GGTGCATATGGAAATAATACTGCACTATCCCCCTATTGCAAGGAGGGGGG
AGTTACGGAGTCCTTCGCTAGGCGATAGTGGGGATGCGACAATCGGCAAA
CGTCACGTTTCTCTTCCTTCCCTCCCTCCCTCCCCCTGATGGGGCATATA
GGTGGCAGTCAACACCTCATTGACGGACCTGAACGATTTCCTCAAGCACC
TGGTAGCCAAGACCAACACCAACTGCCTCACACCCACGTCTTCCTTGGAC
GGACCGAGCTCCTTCCTCGTGAGTTTGTTAGGCAGTTGGTTAGTCGTTAG
TTAATTAACAAGTTAGTTAGCTAGTTGATCAATCAGGTAGCTAGTTGGTC
AGTTAGTTAGTCAGTTAGTCGATTATTTAGCTAGCCAGGTAGTCATTGTT
AGTTAATCCGTTAGCTAGTTGATCAGTTAGTTAGTTAGTCAGGAAGTCAG
TTAGCTAGTTAGTCAGTTAGTCAGTTAGTCTGTTAGTTAGCTTGATAGTG
AACTAACTATACACTAGACTCTCGTACTTTCTTTGTTGCAAGGACATTGT
AAGGACATGTCATAGTGTCATAGTTGTTGGGTGCTCGGTGGAGTTGGACA
TGTCATAGTTCGCGTTAACCTAGCGATCGAATTGGACGGCAGTCCGCAAA
GTCCAGCCATTTATTTAGACTGGCCCCTAGACGGCAGCCCGCTCAGTCCC
GTGATGACTAAATGGTCTAAAGGTCTAAAGGTCAGTCTTAAATAAACCAA
CAGGTGGAGTGTGCTGGAACTTTGTCCCGCGGCCTTAAAAAAAAAATGGG
AAGGTAATCTAGTAGAATTAGAAAGAAAAAAACGAAAACAAAAATATTTG
ATCGGTGTGTGCTGGTAAAGACGCTCCACTTCCTCGGTACAGTCCCGCAT
ACAGTCCCATCCTAGTACTGTATGTTTTCTTTTCTTTTCTTTTCCTTTCT
CTTTCTCTTTCTGCCTCTCCTTCTCTTTCTCCCTCTCCCTCTCCCTCTCC
CTGACCTTTACTAATATTGGTACAAAAGTCGCGCACAAACACACTCATAT
TAGGTACTTGGTATTATTTTTTCACGCACAAACACAAAAAAGTGCGTTTA
ATTCTTCGAAGGCCGACACGTGCTAGCACGCGCGTATCTCTCTCTAAAAA
TATGCTTGACGAGGATACCGTCATTTACCAGCACGTGACACTACCAGATC
TCTTGCTGTCTTGACTCTACCGCTGGCTATGGTCGTGACACTGCCACCCT
CTCGCCCACCCTTTCGCCTGTCTTCCTGTCTGCCTGTCTGCTTGCTTGCT
TCGTTATTTTTCTTTAGGCGGCGAATCTGTACGCGATGAGCGTGTTCGGC
GAGGATGCCTTGGTGAACGTGAGCGTGGAGAAGAAGAGCGACGCCGACGG
AAAACTCAGCGGCCACGTCCGCATACGCAGCAAGACCCAGGGCATCGCCT
TGTCCCTCGGTGACCGCATCACCCTCGTGCAACGCGGCCCGGCCGCTTCC
AGTTCGCAGCCATGA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig15999:111..5075+

>mRNA_H-elongata_contig15999.3857.1 ID=mRNA_H-elongata_contig15999.3857.1|Name=mRNA_H-elongata_contig15999.3857.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2268bp|location=Sequence derived from alignment at H-elongata_contig15999:111..5075+ (Himanthalia elongata Himel1 dioecious)
ATGCTCTTTCTCTTGCTCTTTCAGATCGCCACGCTCCAGATTCTGTGTGG
CGTGGCCAAGGTCATCGAGACGCGCAGCCTTACGCACAGGGGGGCCTTTG
CCGACTGCTTGGAGCGGATGCTCTTTCTCTTGCTCTTTCAGATCGCCACG
CTCCAGATTCTGTGTGGCGTGGCCAAGGTCATCGAGACGCGCAGCCTTAC
GCACAGGGGGGCCTTTGCCGACTGCTTGGAGCGGGTGACCATGTGCTGCC
GTACCCTCTTGGACCCGGCGGCGAGGGAGGTGCTGAAGCCTACGTTGCTC
GAGCTGTGCCGTGAGAGCTTCAAGCAGCTACTAGACAAGGAAAAAGCGGC
GCAGGCCAAGCAGGTGACCATGTGCTGCCGTACCCTCTTGGACCCGGCGG
CGAGGGAGGTGCTGAAGCCTACGTTGCTCGAGCTGTGCCGTGAGAGCTTC
AAGCAGCTACTAGACAAGGAAAAAGCGGCGCAGGCCAAGCAGTCGGAAGA
GCTGGAGGGGCGGCCTAGGAGCCAGCCGGACGACCTCATCAACTTCCGAC
AGCTGCGCAGCAACGCCCTGCATGCCTCGGAGCTCGACATCTACGACGGT
GACGACATCAGTCGGAAGAGCTGGAGGGGCGGCCTAGGAGCCAGCCGGAC
GACCTCATCAACTTCCGACAGCTGCGCAGCAACGCCCTGCATGCCTCGGA
GCTCGACATCTACGACGGTGACGACATCAGCAAGGCGACGGGGATGGACG
CACCTGACGCAGGACGGCTTAGCCACATCTACCAGCTCTCGGGCTTCGCC
GACCCGGTGTATGCGGAGGCTTGCGTCACCGTGCATGACTACGACATCGT
TCTGGAGCAAGGCGACGGGGATGGACGCACCTGACGCAGGACGGCTTAGC
CACATCTACCAGCTCTCGGGCTTCGCCGACCCGGTGTATGCGGAGGCTTG
CGTCACCGTGCATGACTACGACATCGTTCTGGAGATGCTGGTGATTAACC
GCACCCCAAATACTCTGACCAACCTCACCGTCGAGCTGTCTACCATGGGA
GACCTCCGACTCGTGGAGCGGCCACAGTCGCACACCATCGGTCCGCTCGA
CTCTCGCAACATCCGCGCCAACATCAAGATGCTGGTGATTAACCGCACCC
CAAATACTCTGACCAACCTCACCGTCGAGCTGTCTACCATGGGAGACCTC
CGACTCGTGGAGCGGCCACAGTCGCACACCATCGGTCCGCTCGACTCTCG
CAACATCCGCGCCAACATCAAGGTGAGCAGCACGGAGACGGGTCATATCT
TCGGGACTATCGTGTACGAAAACAGCTCCACGGCGGAGAAGACCTACATT
AACCTCAACGACATCCACATGGACATCATGGATTACATCAAGCCCGCCTC
CTGCAGCGAGGAGGCCTTCCGTTCCATGTGGGCAGAGTTCGAGTGGGAGA
ACAAGGTGAGCAGCACGGAGACGGGTCATATCTTCGGGACTATCGTGTAC
GAAAACAGCTCCACGGCGGAGAAGACCTACATTAACCTCAACGACATCCA
CATGGACATCATGGATTACATCAAGCCCGCCTCCTGCAGCGAGGAGGCCT
TCCGTTCCATGTGGGCAGAGTTCGAGTGGGAGAACAAGGTGGCAGTCAAC
ACCTCATTGACGGACCTGAACGATTTCCTCAAGCACCTGGTAGCCAAGAC
CAACACCAACTGCCTCACACCCACGTCTTCCTTGGACGGACCGAGCTCCT
TCCTCGTGGCAGTCAACACCTCATTGACGGACCTGAACGATTTCCTCAAG
CACCTGGTAGCCAAGACCAACACCAACTGCCTCACACCCACGTCTTCCTT
GGACGGACCGAGCTCCTTCCTCGCGGCGAATCTGTACGCGATGAGCGTGT
TCGGCGAGGATGCCTTGGTGAACGTGAGCGTGGAGAAGAAGAGCGACGCC
GACGGAAAACTCAGCGGCCACGTCCGCATACGCAGCAAGACCCAGGGCAT
CGCCTTGTCCCTCGGTGACCGCATCACCCTCGTGCAACGCGGCCCGGCCG
CTTCCAGTTCGCAGCCATGAGCGGCGAATCTGTACGCGATGAGCGTGTTC
GGCGAGGATGCCTTGGTGAACGTGAGCGTGGAGAAGAAGAGCGACGCCGA
CGGAAAACTCAGCGGCCACGTCCGCATACGCAGCAAGACCCAGGGCATCG
CCTTGTCCCTCGGTGACCGCATCACCCTCGTGCAACGCGGCCCGGCCGCT
TCCAGTTCGCAGCCATGA
back to top